HIDE SNP NAMES

The Big Tree: R-Z38845

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > DF41/S524 > Z43690 > S775 > L746 > Z38845

Z38845 is a G to A mutation at position 7483249. This mutation is on the short arm of the Y chromosome in the IR1 region. There are 3 similar regions on the long arm of the Y chromosome and as such it does not show up cleanly in NGS tests if it shows up at all. NGS BAM files will usually show a mixture of G and A reads at this position. Paired end reads can pick up a difference between the regions and suggest that the mutation really is at 7483249.
Z38845
Z17581 Y4954
Y15896
BY11978
BY11979
BY11980
BY11981
BY11982
7179615-GGATGGATGGACAGGCC-G
7179633-TAGAACCCAATGAC-T
BY11983
BY11984
Y14197
Y14198
BY11977
Z17582
A8328
BY11985
BY11986
A8343
ZZ52
BY11987
BY11988
Stewart
337156
Stewart
N2338
Stewart
430337
Stewart
439070
Pearce
35963 YF01793
Stewart
52840
Stewart
358623
Stuart
147822
Stewart
330477
Stewart
367892
Stewart
337093 YF03214
Stewart
430452
Stewart
283694
Stewart
431184
Webb
75703
Stewart
305358
Stewart
275682
Stewart
164047
Stewart
221200
Stewart
367895
Stewart
317006
Stewart
321497
Stuart
368733
Mitchell
52758
Stewart
B1502
Clancey
5987
Stewart
251006
Stewart
320811 YF03673
Stewart
48747

Overlay STR Data for an STR:


Oakes
H2290
Porter
N28007
Men whose NGS data have been fully analyzed are indicated with a grey background color. Red is used for men whose data has not yet been fully analyzed. His position on the tree is not yet final, and will in general be downstream of the current position. He may not be positive for all the SNPs/INDELs in the block he descends from.

CTS4296
22233413-G-A
Mutations written with a red background fall within a region of the Y chromosome, such as the palindromic region, which has left the position of the mutation ambiguous. The true mutation may be at the indicated position, or at any one of a number of alternate positions.