Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > DF21/S192 > Z30233 > FGC3903/S5201 > S5199 > Z246 > DF25 > DF5 > ZZ32 > L1403 > L1402 > A818 > A426 > A1344 > A425 > FGC28340

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
45131
BigY2
45131
7850852-C-T 7982811-C-T FGC28339 YY++
18890563-G-GGAAAGAAA 16778683-G-GGAAAGAAA 11×GAAA+***
13458631-C-A 11302955-C-A *
28807817-C-T 26661670-C-T ****
23823644-CT-C 21661758-CT-C 9×T*
13458630-C-A 11302954-C-A *
10978844-T-G **
10983682-C-A **
10983742-C-A **
10989403-T-A **
10990048-C-A **
10991259-C-CTGTG **
11007554-A-G **
11010130-C-A **
11019233-C-A **
56858185-A-G **
11024336-C-A **
11025482-T-G **
11028258-T-C **
11033647-C-A **
11035244-C-A **
11037915-T-G **
13215478-C-T 11059802-C-T **
13217405-A-G 11061729-A-G **
13222161-A-G 11066485-A-G **
13226212-G-T 11070536-G-T **
13229500-C-G 11073824-C-G **
13233165-T-A 11077489-T-A **
11028245-C-A **
10976240-A-T **
13323409-C-T 11167733-C-T **
10936912-A-C **
10852509-C-T **
10852555-G-T **
10866090-T-A **
10875063-T-A **
10876394-T-C **
10878075-C-A **
10884575-T-A **
10894951-T-C **
10899718-C-A **
10899734-C-A **
10936905-T-A **
10936924-T-C **
10976087-C-G **
10936930-CGAACT-A **
10942380-C-T **
10943932-C-A **
10952663-T-C **
10958608-T-A **
10969041-C-A **
10971176-A-T **
10971732-C-A **
10972048-C-A **
10972953-C-A **
10975581-C-A **
13255753-G-A 11100077-G-A **
13378444-A-AT 11222768-A-AT 12×T**
13347957-A-T 11192281-A-T **
14142199-T-A 12021493-T-A **
14029323-T-C 11908617-T-C **
14032977-A-G 11912271-A-G **
14068501-G-T 11947795-G-T **
14068506-G-C 11947800-G-C **
14073017-T-G 11952311-T-G **
14073170-C-A 11952464-C-A **
14079623-G-T 11958917-G-T **
14098774-C-A 11978068-C-A **
14098891-C-A 11978185-C-A **
14107770-C-G 11987064-C-G **
14108703-C-T 11987997-C-T **
14181536-A-T 12060830-A-T **
14029301-A-T 11908595-A-T **
14220874-C-A 12100168-C-A **
14267616-G-T 12146910-G-T **
14273037-T-G 12152331-T-G **
14315532-C-A 12194826-C-A **
14366389-A-C 12245684-A-C **
14390514-T-A 12269810-T-A **
14465360-A-G 12344633-A-G **
12377526-G-T **
14513931-G-A 12402136-G-A **
14523949-A-C 12412150-A-C **
14549612-C-A 12437813-C-A **
14029305-G-T 11908599-G-T **
14029293-G-T 11908587-G-T **
13347976-A-G 11192300-A-G **
11668236-A-G **
10847411-C-A **
13454767-C-A 11299091-C-A **
13462205-A-G 11306529-A-G **
13465579-A-G 11309903-A-G **
13486919-C-T 11331243-C-T **
13520748-C-A 11365072-C-A **
13557205-C-T 11401529-C-T **
13605728-C-A 11450052-C-A **
13623443-C-A 11467767-C-A **
13637766-G-T 11482090-G-T **
11665465-G-A **
11677237-G-A **
14029274-A-G 11908568-A-G **
11677661-T-C **
13924099-T-C 11803393-T-C **
13965161-T-A 11844455-T-A **
13966659-G-T 11845953-G-T **
13966674-C-T 11845968-C-T **
13974109-T-C 11853403-T-C **
13974114-A-C 11853408-A-C **
13987003-C-A 11866297-C-A **
13999237-G-T 11878531-G-T **
14017577-TA-T 11896871-TA-T **
14029238-A-T 11908532-A-T **
10851673-C-A **
10835026-C-A **
10842544-C-CCACTT **
7428339-G-T 7560298-G-T **
7296339-C-G 7428298-C-G **
7307615-C-A 7439574-C-A **
7310439-T-C 7442398-T-C **
7311540-CT-C 7443499-CT-C **
7318635-C-G 7450594-C-G **
7321898-C-T 7453857-C-T **
7372253-G-T 7504212-G-T **
7380005-G-T 7511964-G-T **
7412960-T-C 7544919-T-C **
7422249-G-T 7554208-G-T **
7428354-T-A 7560313-T-A **
7253744-T-G 7385703-T-G **
7579618-T-C 7711577-T-C **
7630150-C-A 7762109-C-A **
7706410-C-A 7838369-C-A **
7832334-C-A 7964293-C-A **
7933687-C-A 8065646-C-A **
8142772-GA-G 8274731-GA-G **
8171932-T-C 8303891-T-C **
8501746-C-T 8633705-C-T **
8712016-C-A 8843975-C-A **
8735676-C-A 8867635-C-A **
8766318-T-C 8898277-T-C **
7285006-C-A 7416965-C-A **
7248461-C-A 7380420-C-A **
8792935-C-A 8924894-C-A **
7019059-T-C 7151018-T-C **
6752662-A-G 6884621-A-G **
6752669-A-T 6884628-A-T **
6791328-A-G 6923287-A-G **
6888535-C-T 7020494-C-T **
6888536-A-G 7020495-A-G **
6944927-G-A 7076886-G-A **
6948270-C-T 7080229-C-T **
6978422-T-C 7110381-T-C **
7019027-A-G 7150986-A-G **
7019035-C-T 7150994-C-T **
7019047-A-G 7151006-A-G **
7050308-T-G 7182267-T-G **
7242666-G-A 7374625-G-A **
7063674-C-A 7195633-C-A **
7093730-G-A 7225689-G-A **
7100589-C-G 7232548-C-G **
7111851-C-A 7243810-C-A **
7111989-T-C 7243948-T-C **
7131390-C-CA 7263349-C-CA **
7134683-C-A 7266642-C-A **
7153005-T-C 7284964-T-C **
7160328-T-C 7292287-T-C **
7223456-G-T 7355415-G-T **
7238343-C-A 7370302-C-A **
8766376-C-A 8898335-C-A **
8817107-C-A 8949066-C-A **
10840449-C-A **
10757559-C-T **
10684221-T-TTAAAC **
10684261-TTC-T **
10691284-CTCCAT-C **
10691318-A-G **
10691352-C-CACTCA **
10691362-C-T **
10692943-G-C **
10750219-G-A **
10750838-C-G **
10752218-G-T **
10765844-C-T **
10677949-G-A **
10766105-T-C **
10767623-CTCCTT-C **
10768545-G-C **
10772993-C-A **
10783810-A-G **
10788318-C-A **
10798329-T-TC **
10802672-C-A **
10813213-C-A **
10817964-C-G **
14563455-T-C 12451655-T-C **
10683116-T-A **
10667963-C-T **
8817110-C-G 8949069-C-G **
9811198-A-G 9973589-A-G **
8817119-G-C 8949078-G-C **
8817132-G-T 8949091-G-T **
9057321-T-C **
9112836-G-T **
9361055-CAA-C 9523446-CAA-C **
9361089-C-A 9523480-C-A **
9427509-G-A 9589900-G-A **
9427716-G-T 9590107-G-T **
9524063-G-A 9686454-G-A **
9529180-C-CT 9691571-C-CT IR3_Prx **
9529183-TG-T 9691574-TG-T IR3_Prx **
9811209-C-G 9973600-C-G **
10657110-C-A **
9811210-T-A 9973601-T-A **
9811217-A-G 9973608-A-G **
9811221-C-T 9973612-C-T **
9811227-T-C 9973618-T-C **
9811228-G-A 9973619-G-A **
9820473-C-A 9982864-C-A **
9885334-G-T 10047725-G-T **
9962706-G-A 10125097-G-A **
9962767-C-A 10125158-C-A **
10057064-C-A 10219455-C-A **
10631442-C-A **
14562375-G-T 12450575-G-T **
14716557-C-A 12604625-C-A **
14570734-T-G 12458934-T-G **
21108495-C-A 18946609-C-A **
20629011-CCTT-C 18467125-CCTT-C P4_Prx **
20634963-TATG-T 18473077-TATG-T P4_Prx **
20634988-A-ATG 18473102-A-ATG P4_Prx **
20640191-C-A 18478305-C-A P4_Prx **
20654900-C-A 18493014-C-A P4_Prx **
20661964-T-G 18500078-T-G P4_Prx **
20662003-A-G 18500117-A-G P4_Prx **
20700726-C-T 18538840-C-T P4_Prx **
20948977-T-A 18787091-T-A P4_Dst **
20949020-T-TAC 18787134-T-TAC P4_Dst **
21267820-C-T 19105934-C-T **
19720736-AC-A 17608856-AC-A P5_Prx **
21383038-G-T 19221152-G-T **
21394937-C-T 19233051-C-T **
21456155-A-T 19294269-A-T **
21616754-C-A 19454868-C-A **
21668730-T-C 19506844-T-C **
21911942-C-A 19750056-C-A **
22037711-C-T 19875825-C-T **
22058399-A-G 19896513-A-G **
22097252-C-A 19935366-C-A **
22164546-TCAAAAA-T 20002660-TCAAAAA-T **
22169233-C-A 20007347-C-A **
20335028-C-T 18173142-C-T P5_Dst **
19686261-C-A 17574381-C-A P5_Prx **
22340062-T-G 20178176-T-G DYZ19 **
19410088-T-C 17298208-T-C **
19067925-C-A 16956045-C-A **
19127793-A-G 17015913-A-G **
19298822-A-T 17186942-A-T **
19298834-C-G 17186954-C-G **
19298846-T-A 17186966-T-A **
19298854-T-G 17186974-T-G **
19299174-A-G 17187294-A-G **
19389705-T-G 17277825-T-G **
19389715-T-G 17277835-T-G **
19391242-A-G 17279362-A-G **
19398122-C-A 17286242-C-A **
19460476-C-A 17348596-C-A **
19686249-T-C 17574369-T-C P5_Prx **
19465504-T-C 17353624-T-C **
19532507-C-G 17420627-C-G **
19563110-C-A 17451230-C-A **
19645694-T-G 17533814-T-G P5_Prx **
19663201-C-A 17551321-C-A P5_Prx **
19663218-G-T 17551338-G-T P5_Prx **
19686203-A-C 17574323-A-C P5_Prx **
19686207-A-C 17574327-A-C P5_Prx **
19686212-A-C 17574332-A-C P5_Prx **
19686218-C-G 17574338-C-G P5_Prx **
19686220-T-C 17574340-T-C P5_Prx **
22182961-G-T 20021075-G-T **
22530101-T-G 20368215-T-G **
19043014-A-G 16931134-A-G **
28621876-G-C 26475729-G-C **
26170573-G-GAAC 24024426-G-GAAC P1_Y1 **
26170619-A-C 24024472-A-C P1_Y1 **
26415700-A-G 24269553-A-G P1_Y1 **
27263224-A-C 25117077-A-C P1_g3 **
27583246-G-A 25437099-G-A P1_Y2 **
28485336-A-G 26339189-A-G **
28524827-A-C 26378680-A-C **
28555119-A-G 26408972-A-G **
28580344-A-C 26434197-A-C **
28580355-C-G 26434208-C-G **
28630664-C-A 26484517-C-A **
26097887-C-G 23951740-C-G P1_Y1 **
28634268-C-T 26488121-C-T **
28634333-C-T 26488186-C-T **
28732992-A-T 26586845-A-T **
28778889-ACG-A 26632742-ACG-A **
56823282-A-C **
56823618-A-G **
56824141-C-A **
56847263-C-T **
56847750-C-A **
56851029-T-C **
56858184-C-T **
26100405-A-T 23954258-A-T P1_Y1 **
25524614-T-C 23378467-T-C P1_gr1 **
22564780-G-A 20402894-G-A **
23372079-G-T 21210193-G-T **
22615178-C-A 20453292-C-A **
22633897-A-T 20472011-A-T **
22660822-T-C 20498936-T-C **
22715193-G-C 20553307-G-C **
23009075-G-T 20847189-G-T **
23100724-C-A 20938838-C-A **
23100746-C-G 20938860-C-G **
23252689-G-A 21090803-G-A **
23256302-C-A 21094416-C-A **
23288091-G-T 21126205-G-T **
23311411-G-A 21149525-G-A **
23442074-G-A 21280188-G-A **
24666244-G-T 22520097-G-T P3_b2 **
23544932-C-A 21383046-C-A **
23623216-G-T 21461330-G-T **
23779673-A-C 21617787-A-C **
21753402-A-T **
21753558-G-T **
21754152-A-T **
24405029-G-T 22258882-G-T **
24408188-G-T 22262041-G-T **
24450723-C-A 22304576-C-A **
24614267-G-T 22468120-G-T P3_t2 **
24631268-G-GTT 22485121-G-GTT P3_t2 **
19049579-G-C 16937699-G-C **
18985027-C-T 16873147-C-T **
14714771-A-C 12602838-A-C **
15834167-C-G 13722287-C-G **
15585042-G-A 13473162-G-A **
15595118-G-A 13483238-G-A **
15595152-C-T 13483272-C-T **
15606416-T-C 13494536-T-C **
15650654-C-A 13538774-C-A **
15697006-C-A 13585126-C-A **
15697019-G-A 13585139-G-A **
15748390-C-A 13636510-C-A **
15748464-T-A 13636584-T-A **
15834155-A-C 13722275-A-C **
15834172-A-T 13722292-A-T **
15478919-C-A 13367039-C-A **
15839776-C-A 13727896-C-A **
15901402-T-G 13789522-T-G **
15906011-T-C 13794131-T-C **
15906013-C-G 13794133-C-G **
15957011-T-C 13845131-T-C **
16056909-T-C 13945029-T-C **
16056985-A-C 13945105-A-C **
16089631-T-A 13977751-T-A **
16089640-G-C 13977760-G-C **
16120020-T-G 14008140-T-G P8_Prx **
16120156-G-T 14008276-G-T P8_Prx **
15541636-A-T 13429756-A-T **
15399908-G-T 13288028-G-T **
16354882-A-G 14243002-A-G **
15103641-G-A 12991729-G-A **
6752275-G-T 6884234-G-T **
14766697-T-A 12654766-T-A **
14769130-G-T 12657199-G-T **
14794014-G-T 12682085-G-T **
14825924-G-C 12713991-G-C **
14845536-C-A 12733602-C-A **
14919412-C-A 12807477-C-A **
14994275-C-A 12882360-C-A **
15041069-T-G 12929159-T-G **
15041150-C-A 12929240-C-A **
15061676-A-T 12949768-A-T **
15113533-G-C 13001620-G-C **
15399903-A-C 13288023-A-C **
15113539-C-A 13001626-C-A **
15113550-A-C 13001637-A-C **
15127826-TAC-T 13015913-TAC-T **
15131673-C-A 13019760-C-A **
15201688-C-A 13089774-C-A **
15220959-G-C 13109045-G-C **
15285820-C-A 13173919-C-A **
15297561-GT-G 13185660-GT-G **
15364685-C-T 13252805-C-T **
15395086-C-A 13283206-C-A **
15399849-T-C 13287969-T-C **
16269471-G-T 14157591-G-T **
16394278-C-T 14282398-C-T **
18972668-C-A 16860788-C-A **
18201961-AT-A 16090081-AT-A **
17990813-G-C 15878933-G-C P7_Prx **
18022487-C-A 15910607-C-A **
18130759-C-A 16018879-C-A **
18151830-C-T 16039950-C-T **
18154602-G-T 16042722-G-T **
18172982-A-G 16061102-A-G **
18183111-C-A 16071231-C-A **
18183302-T-A 16071422-T-A **
18183307-T-C 16071427-T-C **
18188014-T-G 16076134-T-G **
18263839-C-G 16151959-C-G **
17884603-C-A 15772723-C-A **
18263852-G-T 16151972-G-T **
18263854-CT-C 16151974-CT-C **
18401043-A-C 16289163-A-C P6_Gap **
18454705-T-C 16342825-T-C P6_Dst **
18539346-C-T 16427466-C-T **
18688445-G-A 16576565-G-A **
18743314-C-A 16631434-C-A **
18768430-T-A 16656550-T-A **
18832940-C-A 16721060-C-A **
18838528-A-C 16726648-A-C **
18940744-C-A 16828864-C-A **
17923524-C-A 15811644-C-A **
17883754-C-T 15771874-C-T **
16427271-A-G 14315391-A-G **
17020635-TA-T 14908755-TA-T **
16464751-G-T 14352871-G-T **
16490175-T-A 14378295-T-A **
16536092-C-A 14424212-C-A **
16577555-C-A 14465675-C-A **
16598945-G-A 14487065-G-A **
16700251-C-T 14588371-C-T **
16710439-G-A 14598559-G-A **
16747524-T-C 14635644-T-C **
16765015-C-A 14653135-C-A **
16778050-C-A 14666170-C-A **
16778994-T-C 14667114-T-C **
17095851-A-C 14983971-A-C **
17760490-C-A 15648610-C-A **
17333884-C-T 15222004-C-T **
17363264-G-A 15251384-G-A **
17502902-G-T 15391022-G-T **
17512516-C-T 15400636-C-T **
17517235-A-G 15405355-A-G **
17545550-G-T 15433670-G-T **
17657959-G-T 15546079-G-T **
17657972-G-A 15546092-G-A **
17666495-A-C 15554615-A-C **
17693743-C-A 15581863-C-A **
17737796-T-C 15625916-T-C **
6752608-C-T 6884567-C-T **
7128268-G-A 7260227-G-A **
6652483-T-C 6784442-T-C **
6648345-T-C 6780304-T-C **
10846870-T-C **
10846897-T-C **
10846902-C-G **
10846912-C-A **
10846921-T-A **
5534781-C-A 5666740-C-A **
20700684-CA-C 18538798-CA-C P4_Prx **
10971634-C-A **
15786013-G-T 13674133-G-T **
7224216-C-A 7356175-C-A **
10801718-A-T **
22127975-CTTTT-C 19966089-CTTTT-C 20×T**
17146550-C-A 15034670-C-A 12×A**
7296479-C-A 7428438-C-A **
17333891-C-T 15222011-C-T **
13469558-A-C 11313882-A-C **
13469570-AT-A 11313894-AT-A **
17512554-T-G 15400674-T-G **
11024460-C-G **
6825514-G-T 6957473-G-T **
10004868-CGTGT-C 10167259-CGTGT-C 8×GT**
7335803-C-A 7467762-C-A **
17090875-C-T 14978995-C-T **
28091456-AC-A 25945309-AC-A P1_Y2 **
5927210-G-T 6059169-G-T **
7307627-A-AAT 7439586-A-AAT **
24611994-A-AG 22465847-A-AG P3_t2 **
10860070-C-CCTTTG **
17622276-C-A 15510396-C-A **
10996092-T-A **
8389597-G-A 8521556-G-A **
11031742-A-T **
14810936-C-A 12699007-C-A **
10895783-T-A **
10895810-C-T **
11016639-C-A **
15041070-T-C 12929160-T-C **
13486880-C-CT 11331204-C-CT 26×T**
13469581-C-A 11313905-C-A **
13566283-G-T 11410607-G-T **
10945710-C-T **
23310495-C-A 21148609-C-A **
10691305-TTGATC-T **
10691324-C-T **
10691328-G-C **
10691338-A-C **
14454403-C-A 12333676-C-A **
16305915-A-C 14194035-A-C **
14298025-C-A 12177319-C-A **
10936910-C-T **
7633188-C-A 7765147-C-A **
18244481-C-A 16132601-C-A **
11022921-C-T **
14490849-AT-A 12370118-AT-A 8×T**
10866274-T-C **
21076978-C-A 18915092-C-A **
17143931-C-G 15032051-C-G **
22703468-C-A 20541582-C-A **
21148541-T-A 18986655-T-A **
10691302-C-A **
7221548-C-A 7353507-C-A **
21476915-C-A 19315029-C-A **
23654844-A-G 21492958-A-G **
10857937-C-A **
10004988-C-A 10167379-C-A **
23126730-C-A 20964844-C-A **
10754744-G-GCTTTC **
14696892-C-A 12584958-C-A **
16029185-C-A 13917305-C-A **
10779982-G-T **
10971946-CCACTT-C **
14826548-GTTT-G 12714615-GTTT-G 19×T**
16041948-AT-A 13930068-AT-A **
13196384-C-A 11040708-C-A **
10992260-C-A **
17802166-TAA-T 15690286-TAA-T 30×A**
6756887-T-A 6888846-T-A **
17633124-C-A 15521244-C-A **
10785803-C-A **
16354883-GA-G 14243003-GA-G 9×A**
15918506-C-A 13806626-C-A **
14470562-G-T 12349831-G-T **
10945707-G-A **
14379149-C-A 12258445-C-A **
7286929-C-A 7418888-C-A **
10807064-A-T **
10954286-C-T **
10954308-T-TTTGATTCTAA **
10785269-A-ACTC **
10785270-T-TAG **
10785278-C-A **
10785282-C-T **
11022928-A-T **
20700730-A-T 18538844-A-T P4_Prx 9×T**
19461252-C-A 17349372-C-A **
10859990-C-G **
10807082-G-T **
6944930-C-A 7076889-C-A **
9732917-C-T 9895308-C-T IR3_Prx **
10846879-T-A **
10807072-C-CCCCTG **
10807078-C-T **
18263856-CAAAAAA-C 16151976-CAAAAAA-C 26×A**
16623881-G-T 14512001-G-T **
10807157-C-CTACTG **
18707782-GTA-G 16595902-GTA-G **
28731995-C-A 26585848-C-A **
9363320-C-CG 9525711-C-CG **
10091698-A-T 10254089-A-T **
17130559-C-A 15018679-C-A **
9529142-CT-C 9691533-CT-C IR3_Prx 15×T**
8556331-G-T 8688290-G-T **
19138349-CTATA-C 17026469-CTATA-C 11×TA**
10049815-G-C 10212206-G-C **
17090871-T-G 14978991-T-G **
6768903-G-T 6900862-G-T **
59031692-C-T 56885545-C-T **
14492559-G-T 12380756-G-T **
10049827-C-G 10212218-C-G **
10049843-T-C 10212234-T-C **
10049888-A-AG 10212279-A-AG **
15041071-G-A 12929161-G-A **
59019782-G-A 56873635-G-A **
14179193-GA-G 12058487-GA-G 10×A**
10807155-C-A **
10807168-A-T **
10945698-G-A **
10860082-G-A **
10692749-C-A **
10692764-C-CACCACT **
13486926-T-G 11331250-T-G **
15364044-A-G 13252164-A-G **
3870953-TA-T 4002912-TA-T 13×A**
15397265-G-T 13285385-G-T **
10860066-T-C **
10860087-T-A **
10692726-T-C **
10991260-C-CAGGTTA **
10785808-G-C **
26118897-C-T 23972750-C-T P1_Y1 **
56844586-C-T **
14413210-CAAA-C 12292507-CAAA-C 23×A**
10989423-T-A **
10785289-A-C **
10972408-C-CCACAA **
10692744-C-A **
10692723-A-G **
13486920-G-C 11331244-G-C **
10692646-C-T **
11022919-C-T **
14425683-C-A 12304958-C-A **
10801692-C-T **
23723625-C-T 21561739-C-T **
10954325-C-G **
6787024-C-A 6918983-C-A **
10691254-A-T **
19532512-C-A 17420632-C-A **
10692666-C-A **
10692721-T-C **
10692672-C-T **
10692693-AATC-A **
10692698-A-G **
10692699-A-AGGC **
10692701-T-A **
10692703-G-A **
10692718-G-A **
10692720-T-A **
9852715-C-CAA 10015106-C-CAA 12×A**
10989406-G-T **
10757366-A-T **
3665347-C-A 3797306-C-A **
3490675-C-A 3622634-C-A **
3569628-A-T 3701587-A-T **
3577730-G-T 3709689-G-T **
3612449-T-A 3744408-T-A **
3622233-C-A 3754192-C-A **
3627849-C-A 3759808-C-A **
3656871-G-T 3788830-G-T **
3681307-G-T 3813266-G-T **
3179738-G-T 3311697-G-T 11×T**
3687816-G-T 3819775-G-T **
3806454-G-T 3938413-G-T **
3873503-C-A 4005462-C-A **
3877068-A-G 4009027-A-G **
3940726-C-A 4072685-C-A **
3991896-C-A 4123855-C-A **
4031148-A-C 4163107-A-C **
4057038-T-C 4188997-T-C **
3251837-A-G 3383796-A-G **
3156481-G-T 3288440-G-T **
4088282-T-C 4220241-T-C **
2860122-G-C 2992081-G-C **
14195321-G-T 12074615-G-T **
17004532-A-C 14892652-A-C **
17375688-C-A 15263808-C-A **
2665742-C-G 2797701-C-G **
2685746-T-G 2817705-T-G **
2814859-C-G 2946818-C-G **
2814877-TAAAAAAAAA-T 2946836-TAAAAAAAAA-T 14×A**
2860077-G-T 2992036-G-T **
2884261-G-T 3016220-G-T **
3121772-C-T 3253731-C-T **
2885552-A-G 3017511-A-G **
2948915-A-T 3080874-A-T **
3037717-G-T 3169676-G-T **
3091401-C-A 3223360-C-A **
3091439-T-C 3223398-T-C **
3108547-C-A 3240506-C-A **
3112328-G-A 3244287-G-A **
3116474-T-A 3248433-T-A **
4072497-C-A 4204456-C-A **
4140404-C-A 4272363-C-A **
18966277-C-A 16854397-C-A **
5668000-G-T 5799959-G-T **
5230855-C-A 5362814-C-A **
5276327-G-T 5408286-G-T **
5316842-G-T 5448801-G-T **
5419922-T-C 5551881-T-C **
5420712-G-T 5552671-G-T **
5443429-C-A 5575388-C-A **
5537576-T-C 5669535-T-C **
5815364-G-A 5947323-G-A **
4964676-C-A 5096635-C-A **
5982679-G-A 6114638-G-A **
6023366-A-G 6155325-A-G **
6125532-T-A 6257491-T-A **
6146630-A-G 6278589-A-G IR3_Dst **
6147636-C-A 6279595-C-A IR3_Dst **
6295688-T-C 6427647-T-C IR3_Dst **
6474914-C-A 6606873-C-A **
6578637-T-G 6710596-T-G **
5061042-T-G 5193001-T-G **
4919530-A-T 5051489-A-T **
4142369-A-G 4274328-A-G **
4518240-T-C 4650199-T-C **
4142483-G-A 4274442-G-A **
4142560-A-T 4274519-A-T **
4201169-T-C 4333128-T-C **
4229132-T-C 4361091-T-C **
4315437-G-T 4447396-G-T **
4315496-A-C 4447455-A-C **
4315513-C-A 4447472-C-A **
4374307-G-C 4506266-G-C **
4521623-A-G 4653582-A-G **
4872510-T-C 5004469-T-C **
4582283-T-A 4714242-T-A **
4585100-C-A 4717059-C-A **
4642246-G-T 4774205-G-T **
4645738-G-A 4777697-G-A **
4701394-C-A 4833353-C-A **
4769377-A-T 4901336-A-T **
4824135-G-T 4956094-G-T **
4864089-C-A 4996048-C-A **
10663611-G-T **
4107767-G-T 4239726-G-T **
3867534-G-GTT 3999493-G-GTT 12×T**
11672732-G-T Y125171 **
4223496-T-C 4355455-T-C **
15061665-G-T 12949757-G-T **
4070894-C-A 4202853-C-A **
3529572-C-CT 3661531-C-CT 13×T**
14047209-C-A 11926503-C-A **
10783808-C-A **
20440396-T-TTGA 18278510-T-TTGA P5_Dst **
16583425-C-A 14471545-C-A **
10750202-C-A **
4201550-C-A 4333509-C-A **
17334125-C-A 15222245-C-A **
10663059-AACTCC-A **
15532405-C-A 13420525-C-A **
17480218-C-A 15368338-C-A **
19465481-G-A 17353601-G-A **
10690830-G-T **
15034907-C-A 12922995-C-A **
17375653-C-A 15263773-C-A **
19720735-G-A 17608855-G-A P5_Prx **
21325883-C-A 19163997-C-A **
13942536-C-A 11821830-C-A **
5817380-T-C 5949339-T-C **
19448345-C-A 17336465-C-A **
10991241-A-T **
7873724-C-A 8005683-C-A **
9056932-T-A **
11024438-T-A **
13308356-C-A 11152680-C-A **
15412802-C-T 13300922-C-T **
23434442-A-T 21272556-A-T **
10956633-C-G **
14563522-C-A 12451722-C-A **
3831106-C-A 3963065-C-A **
4326426-C-A 4458385-C-A **
10895769-T-G **
28481096-C-A 26334949-C-A **
21438329-C-A 19276443-C-A **
10881067-C-A **
21444505-C-A 19282619-C-A **
9857267-T-C 10019658-T-C **
27994689-A-AT 25848542-A-AT P1_Y2 **
10684266-C-T **
5426473-C-A 5558432-C-A **
3286685-C-A 3418644-C-A **
6944942-T-A 7076901-T-A **
24259894-GCA-G 22113747-GCA-G P3_b1 **
27943975-CA-C 25797828-CA-C P1_Y2 **
25954145-T-A 23807998-T-A P1_Y1 ***
28818159-G-A 26672012-G-A ***
13467138-T-A 11311462-T-A ***
13465270-TC-T 11309594-TC-T ***
13467078-C-A 11311402-C-A ***
58972987-T-A 56826840-T-A ***
58827228-TCCATTTGATGCCATC-T,TCCATTTGATGCCATT 56763623-CATGGGATGGCATCAA-C,CATGGAATGGCATCAA ***
58982963-T-C 56836816-T-C ***
13451746-C-CTCCGT,CTGCAA 11296070-C-CTCCGT,CTGCAA ***
22536404-A-G 20374518-A-G ***
20332109-ACC-A 18170223-ACC-A P5_Dst ***
13484231-C-T 11328555-C-T ***
21200997-C-A 19039111-C-A ***
18369802-C-CAAA 16257922-C-CAAA P6_Prx 25×A***
21464765-CTTC-C,CTTA 19302879-CTTC-C,CTTA ***
13868290-C-CGAATGGAATG 11747584-C-CGAATGGAATG 4×GAATG***
13852193-T-A 11731487-T-A ***
21947116-C-A 19785230-C-A ***
21974608-C-A 19812722-C-A ***
21306630-AG-A 19144744-AG-A ***
13852192-G-T 11731486-G-T ***
13852187-A-G 11731481-A-G ***
13599580-T-A 11443904-T-A ***
21138720-C-A 18976834-C-A ***
22364361-A-T 20202475-A-T DYZ19 ***
13841201-G-A 11720495-G-A ***
13841176-G-T 11720470-G-T ***
13664692-C-G 11509016-C-G ***
23761606-GAA-G 21599720-GAA-G ******
13662094-GGAAA-G 11506418-GGAAA-G ***
25274360-TA-T 23128213-TA-T P2_r1 8×A***
19892900-G-T 17781020-G-T P5_Prx ***
13505081-C-A 11349405-C-A ***
13599428-G-A 11443752-G-A ***
22771933-C-A 20610047-C-A ***
23747202-C-T 21585316-C-T ***
8644356-ACAG-A 8776315-ACAG-A ***
28090331-G-T 25944184-G-T P1_Y2 ***
26527131-AAC-A 24380984-AAC-A P1_g2 11×AC***
58981802-C-T 56835655-C-T ***
58983784-A-G 56837637-A-G ***
19492290-C-CAA 17380410-C-CAA 37×A***
58978442-T-TATTCC 56832295-T-TATTCC ***
13825276-T-A 11704570-T-A ***
28787595-G-A 26641448-G-A ***
25312586-T-A 23166439-T-A P2_r1 25×A***
20213074-C-CT 18051188-C-CT P5_Dst ***
6247985-AAC-A 6379944-AAC-A IR3_Dst ***
28747510-C-A 26601363-C-A ***
16107441-A-T 13995561-A-T P8_Prx ***
56685529-T-G ***
13691264-A-G 11535588-A-G ***
13823165-A-G 11702459-A-G ***
58973995-C-T 56827848-C-T ***
56833243-C-G ***
13823181-T-A 11702475-T-A ***
13678627-T-A 11522951-T-A ***
13449387-T-C 11293711-T-C ***
13846554-G-A 11725848-G-A ***
28785779-A-G 26639632-A-G ***
13860315-G-A 11739609-G-A ***
22998601-T-A 20836715-T-A ***
13852245-A-C 11731539-A-C BY25832 ***
9319386-C-T 9481777-C-T ***
2836370-G-T 2968329-G-T ***
6268767-C-A 6400726-C-A IR3_Dst 16×A***
13852205-T-A 11731499-T-A ***
13456259-ACTTCC-A,CCTTCA 11300583-ACTTCC-A,CCTTCA ***
11038155-T-A,C ***
17329847-TAC-T 15217967-TAC-T 11×AC***
28818243-C-A 26672096-C-A ***
13455859-CACTGGGTTTGAGTCA-C 11300183-CACTGGGTTTGAGTCA-C ***
13194984-TTCCAC-T 11039308-TTCCAC-T ***
13453558-A-C 11297882-A-C S13809 ***
26101362-C-A 23955215-C-A P1_Y1 17×A***
58908930-C-G 56681941-G-C ***
24392396-C-A 22246249-C-A ***
28818204-A-G 26672057-A-G ***
13523053-G-A 11367377-G-A ***
19892868-G-GT,T 17780988-G-GT,T P5_Prx 31×T***
13865759-A-C 11745053-A-C ***
13857970-C-G 11737264-C-G ***
13848277-T-A 11727571-T-A ***
13836369-GACTCC-G 11715663-GACTCC-G ***
58855332-G-T 56735539-C-A 4×CATTC***
28120568-G-GTT 25974421-G-GTT P1_b4 20×T***
58985607-G-T 56839460-G-T ***
13846548-T-C 11725842-T-C ***
13860001-G-GATGGA 11739295-G-GATGGA ***
10964239-T-C ***
10964243-A-T ***
10964231-CT-C ***
10964227-C-T ***
10785838-C-T ***
9498947-G-A 9661338-G-A ***
9440170-CA-C 9602561-CA-C ***
9440166-AG-A 9602557-AG-A ***
16427402-G-A 14315522-G-A ***
9361103-A-T 9523494-A-T ***
15928408-C-A 13816528-C-A ***
14242131-C-T 12121425-C-T ***
14753223-C-A 12641292-C-A ***
10851870-A-T ***
13212789-C-A 11057113-C-A ***
10926588-T-A ***
24381391-C-A 22235244-C-A 11×A***
14429399-C-A 12308674-C-A ***
56835376-C-T ***
3923221-C-A 4055180-C-A ***
10964248-A-T ***
10964254-T-A ***
8498338-CAAA-C,CAA 8630297-CAAA-C,CAA 16×A***
56846854-C-T ***
10821868-A-T ***
15197286-C-A 13085372-C-A ***
15257262-CAAA-C 13145346-CAAA-C 14×A***
23120663-G-T 20958777-G-T ***
16282397-T-C 14170517-T-C ***
2693526-A-T 2825485-A-T ***
21554930-C-A 19393044-C-A ***
10648039-C-A ***
14716618-A-G 12604686-A-G ***
10825259-CCATTCCGTTT-C,CCATTCCATTA ***
22729581-C-A 20567695-C-A ***
10798342-A-T ***
10798351-C-CGTTCA ***
10686545-G-C ***
15816238-C-A 13704358-C-A ***
17169890-G-T 15058010-G-T ***
13489383-C-G 11333707-C-G ***
14540849-G-T 12429050-G-T ***
23196210-C-T 21034324-C-T ***
8654173-C-A 8786132-C-A FGC65074 ***
8407372-G-T 8539331-G-T ***
13821167-T-TGGAAA 11700461-T-TGGAAA ***
19415917-C-A 17304037-C-A ***
58979386-T-A 56833239-T-A ***
58979383-C-T 56833236-C-T ***
58979376-T-C 56833229-T-C ***
19312870-T-C 17200990-T-C ***
18615980-C-A 16504100-C-A ***
18565060-TC-T 16453180-TC-T ***
58989274-T-A 56843127-T-A ***
15014318-TAA-T 12902406-TAA-T 12×A***
13485625-G-C 11329949-G-C ***
21558718-C-T 19396832-C-T ***
19506631-C-A 17394751-C-A ***
17324221-G-A 15212341-G-A ***
13449449-C-T 11293773-C-T ***
3680765-C-A 3812724-C-A ***
13453318-GCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTC-G 11297642-GCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTC-G 12×CATTC***
7218313-G-T 7350272-G-T ***
11008913-C-A ***
5761332-TA-T 5893291-TA-T ***
10746909-ACTC-A ***
5011430-C-A 5143389-C-A ***
14286784-CTTTT-C 12166078-CTTTT-C 22×T***
8385241-G-A 8517200-G-A FGC33993 ***
10789346-A-T ***
8333464-G-T 8465423-G-T ***
11033093-C-A ***
10892524-A-G ***
4108153-C-A 4240112-C-A ***
7646416-TAAA-T 7778375-TAAA-T 14×A***
18097801-C-A 15985921-C-A ***
10926564-T-C ***
4241696-G-T 4373655-G-T ***
10785809-C-A ***
13478141-C-A 11322465-C-A ***
17950939-G-A 15839059-G-A Y72717 ***
56834891-C-T ***
13850186-C-A 11729480-C-A ***
10892515-T-C ***
14338980-C-T 12218275-C-T ***
18831682-C-T 16719802-C-T ***
18901007-C-A 16789127-C-A ***
13618039-TG-T 11462363-TG-T ***
7207391-G-A 7339350-G-A ***
19004592-T-C 16892712-T-C ***
7225815-TAC-T 7357774-TAC-T 10×AC***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

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