Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > DF21/S192 > S5488 > Z16294 > BY11121 > Z16281 > Z16282 > Z16291 > Z16284 > b38:24168098G>T > Z16289

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
16297603-A-G 14185723-A-G FGC58697 YY+
18166961-G-A 16055081-G-A FGC58700 YY+
15110500-G-C 12998587-G-C FGC58696 YY+
14148014-A-AAAAT 12027308-A-AAAAT 8×AAAT+
9851256-T-C 10013647-T-C FGC58695 YY+
21368155-C-T 19206269-C-T FGC58702 YY+
21701006-C-A 19539120-C-A FGC58703 YY+
19124488-G-C 17012608-G-C FGC58701 YY+
16378382-C-G 14266502-C-G FGC58698 YY+
18354326-A-C 16242446-A-C P6_Prx +
18021711-C-T 15909831-C-T CTS8429 Y+
18354291-G-A 16242411-G-A P6_Prx 4×AGAA+
22480189-C-A 20318303-C-A DYZ19 +
23449530-C-T 21287644-C-T FGC58705 YY+
58974096-A-T 56827949-A-T **
20231508-C-CAAGAAAGA 18069622-C-CAAGAAAGA P5_Dst 21×AAGA**
58974053-T-G 56827906-T-G **
18639018-AGTGTGTGTGT-A 16527138-AGTGTGTGTGT-A 26×GT**
20995546-TCTTTC-T 18833660-TCTTTC-T P4_Dst 11×CTTTC**
20349166-CA-C 18187280-CA-C P5_Dst **
20927153-G-T 18765267-G-T P4_Dst **
10023749-G-C 10186140-G-C **
58974038-T-G 56827891-T-G **
13606474-C-G 11450798-C-G **
28551949-G-A 26405802-G-A CTS12267 **
10018107-G-C 10180498-G-C **
28551953-A-G 26405806-A-G CTS12268 **
28565702-A-G 26419555-A-G CTS12290 **
58974071-C-T 56827924-C-T **
58974056-C-A 56827909-C-A **
58974027-A-G 56827880-A-G **
13860859-G-A 11740153-G-A PF1969 Z831 **
9068835-G-A 9231226-G-A ***
13812782-T-G 11692076-T-G ***
13805327-G-T 11684621-G-T ***
13661240-A-C 11505564-A-C ***
13447292-C-T 11291616-C-T ***
13476405-G-A 11320729-G-A ***
13447294-T-A 11291618-T-A ***
10024171-G-C 10186562-G-C ***
13447279-T-C 11291603-T-C ***
13139301-ATTCAG-A 10628787-ATTCAG-A ***
13447049-G-A 11291373-G-A ***
13447041-T-A 11291365-T-A ***
13818687-G-C 11697981-G-C ***
9068807-T-C 9231198-T-C ***
9068834-T-C 9231225-T-C ***
22147870-T-C 19985984-T-C ***
13143617-C-T 10633103-C-T ***
58975958-T-A 56829811-T-A ***
13865775-G-A 11745069-G-A ***
18479588-GA-G 16367708-GA-G P6_Dst 11×A***
9068855-G-C 9231246-G-C ***
9068856-C-T 9231247-C-T ***
24278264-A-G 22132117-A-G P3_b1 ***
24278268-A-C 22132121-A-C P3_b1 ***
25954329-ATT-A 23808182-ATT-A P1_Y1 17×T***
20312787-C-CT 18150901-C-CT P5_Dst 16×T***
20884101-GA-G 18722215-GA-G P4_Dst 10×A***
58974008-T-G 56827861-T-G ***
9068819-CACT-C 9231210-CACT-C ***
58974077-A-T 56827930-A-T ***
58974111-C-G 56827964-C-G ***
58974117-A-C 56827970-A-C ***
58974125-C-G 56827978-C-G ***
58974128-T-C 56827981-T-C ***
13676585-G-T 11520909-G-T ***
13818177-C-A 11697471-C-A ***
9068859-G-A 9231250-G-A ***
13869618-T-A 11748912-T-A ***
13454003-C-T 11298327-C-T ***
13833639-G-A 11712933-G-A ***
9068815-G-A 9231206-G-A ***
13826209-T-A 11705503-T-A ***
13865861-A-C 11745155-A-C ***
13833696-T-G 11712990-T-G ***
28784403-ATGTAG-A,ATGGAA 26638256-ATGTAG-A,ATGGAA ***
24696067-C-A 22549920-C-A P3_b2 ***
24960872-ATGTG-A 22814725-ATGTG-A g1 15×TG***
25017508-T-A 22871361-T-A g1 ***
25461474-C-T 23315327-C-T P2_r2 ***
26272049-A-G 24125902-A-G P1_Y1 ***
26314268-G-C 24168121-G-C P1_Y1 ***
26793295-G-C 24647148-G-C P1_g2 ***
26928175-A-AT 24782028-A-AT P1_r3 ***
27410606-CT-C 25264459-CT-C P1_g3 9×T***
28027982-A-AT 25881835-A-AT P1_Y2 17×T***
28143480-CT-C 25997333-CT-C P1_b4 10×T***
28796710-T-C 26650563-T-C ***
24041442-T-C 21895295-T-C ***
28799141-A-G 26652994-A-G ***
58833966-TCCATTCCATA-T 56756885-GATGGAATGGT-G ***
58908960-G-C 56681911-C-G ***
58908969-G-C 56681902-C-G ***
58972485-C-G 56826338-C-G ***
58974141-C-G 56827994-C-G ***
58976397-T-C 56830250-T-C ***
58976417-TTCCTC-T 56830270-TTCCTC-T ***
58979632-T-C 56833485-T-C 4×TCCAC***
13823254-G-GATGGA 11702548-G-GATGGA ***
10023123-G-C,T 10185514-G-C,T ***
24654495-C-CT 22508348-C-CT P3_b2 15×T***
22727029-A-C 20565143-A-C ***
13838333-A-T 11717627-A-T ***
16250624-G-GTTT 14138744-G-GTTT 28×T***
13842272-C-A 11721566-C-A ***
13843464-T-G 11722758-T-G ***
13853821-T-G 11733115-T-G ***
13855621-C-A,G 11734915-C-A,G ***
13857429-A-T 11736723-A-T ***
13865722-A-C 11745016-A-C ***
13865844-G-A 11745138-G-A ***
13865860-G-T 11745154-G-T ***
13446640-C-T 11290964-C-T ***
13865863-T-C 11745157-T-C ***
13867282-C-T 11746576-C-T ***
17446767-C-CTT 15334887-C-CTT 33×T***
22477843-C-T 20315957-C-T FGC58704 DYZ19 ***
18354154-AAGAAAGAAAT-A 16242274-AAGAAAGAAAT-A P6_Prx ***
18354307-A-T 16242427-A-T P6_Prx ***
19250664-GT-G 17138784-GT-G 45×T***
19664113-A-G 17552233-A-G P5_Prx ***
19770084-T-C 17658204-T-C P5_Prx ***
20231604-G-A 18069718-G-A P5_Dst ***
20795908-TA-T 18634022-TA-T P4_Prx 19×A***
22147840-T-C 19985954-T-C ***
22147860-T-C 19985974-T-C ***
22423076-T-C 20261190-T-C DYZ19 ***
8125125-G-A 8257084-G-A ***
25657077-AT-A 23510930-AT-A P1_b3 12×T***
58975699-T-C 56829552-T-C ***
13652090-A-G 11496414-A-G ***
13812837-GAATGC-G 11692131-GAATGC-G ***
3640482-C-CCTTTCTTT 3772441-C-CCTTTCTTT 13×CTTT***
9068745-C-A 9231136-C-A ***
9068746-G-A 9231137-G-A ***
9068758-A-C 9231149-A-C ***
9068770-A-C 9231161-A-C ***
9068773-A-C 9231164-A-C ***
9068782-A-C 9231173-A-C ***
9971894-C-T 10134285-C-T ***
13139309-G-C 10628795-G-C ***
13478992-G-A 11323316-G-A ***
13835227-A-G 11714521-A-G ***
13866295-C-A 11745589-C-A ***
28784338-A-G 26638191-A-G ***
58977120-G-A 56830973-G-A ***
10020624-C-T 10183015-C-T ***
10020625-T-C 10183016-T-C ***
13652220-A-G 11496544-A-G ***
13662118-C-A 11506442-C-A ***
58977130-G-A 56830983-G-A ***
58977221-A-C 56831074-A-C ***
13865842-A-G 11745136-A-G ***
13667259-C-A 11511583-C-A ***
13854247-G-T 11733541-G-T ***
13869907-C-T 11749201-C-T ***
28786651-T-A,G 26640504-T-A,G ***
27134986-GA-G 24988839-GA-G P1_g3 11×A***
58822264-C-T 56768607-G-A ***
58977131-C-T 56830984-C-T ***
26189760-G-GT 24043613-G-GT P1_Y1 21×T***
13480609-A-G 11324933-A-G ***
22271863-G-A 20109977-G-A DYZ19 ***
13843479-GGTAAA-G 11722773-GGTAAA-G ***
19948163-C-T 17836283-C-T P5_Prx ***
27791831-T-C 25645684-T-C P1_Y2 22×TTC***
13843452-C-A 11722746-C-A ***
10006321-T-C 10168712-T-C ***
19586695-A-T 17474815-A-T P5_Prx 22×T***
13141818-C-T 10631304-C-T ***
10023720-C-T 10186111-C-T ***
13141973-T-C 10631459-T-C ***
13835232-G-A 11714526-G-A ***
13835239-G-C 11714533-G-C ***
13847419-T-G 11726713-T-G ***
13858460-T-G 11737754-T-G ***
22271864-A-T 20109978-A-T DYZ19 ***
13866285-A-G 11745579-A-G ***
13458606-A-C 11302930-A-C ***
58974136-A-C 56827989-A-C ***
13805352-A-T 11684646-A-T ***
13447214-C-T 11291538-C-T ***
13458212-T-A 11302536-T-A ***
13731468-T-A 11575792-T-A ***
19744991-ATT-A 17633111-ATT-A P5_Prx 23×T***
13463175-G-A 11307499-G-A ***
13810208-G-T 11689502-G-T ***
13838254-A-C 11717548-A-C ***
13842277-A-G 11721571-A-G ***
13842291-A-T 11721585-A-T ***
13858431-C-A 11737725-C-A ***
13858439-A-G 11737733-A-G ***
13447083-T-A 11291407-T-A ***
13459696-T-A 11304020-T-A ***
13838875-C-G 11718169-C-G ***
20869229-CT-C 18707343-CT-C P4_Dst 22×T***
13866294-G-C 11745588-G-C ***
28802842-T-C 26656695-T-C ***
13458862-T-G 11303186-T-G ***
13828165-A-T 11707459-A-T ***
21023249-GT-G 18861363-GT-G P4_Dst 14×T***
13143623-C-T 10633109-C-T ***
13661263-T-A 11505587-T-A ***
13661952-A-G 11506276-A-G ***
13677926-C-A 11522250-C-A ***
13843408-T-A 11722702-T-A ***
13865767-A-G 11745061-A-G ***
13865838-T-A 11745132-T-A ***
13865852-A-T 11745146-A-T ***
58977239-C-T 56831092-C-T ***
13856246-A-T 11735540-A-T ***
22147854-C-T 19985968-C-T ***
22147859-C-T 19985973-C-T ***
13678534-T-G 11522858-T-G ***
13802024-T-G 11681318-T-G ***
13802025-T-G 11681319-T-G ***
16157735-GAAAGA-G 14045855-GAAAGA-G P8_Dst 10×AAAGA***
13858724-GGAATC-G 11738018-GGAATC-G ***
13674763-T-G 11519087-T-G ***
13857626-G-A 11736920-G-A ***
22147868-T-C 19985982-T-C ***
58974126-C-G 56827979-C-G ***
13652215-A-G 11496539-A-G ***
13842262-G-A 11721556-G-A ***
13866293-T-A 11745587-T-A ***
13686860-A-G 11531184-A-G ***
13844695-G-A 11723989-G-A ***
25445990-A-AT 23299843-A-AT P2_r2 17×T***
13866290-G-T 11745584-G-T ***
28784518-A-G 26638371-A-G ***
13862210-G-C 11741504-G-C ***
19411908-G-A 17300028-G-A ***
24861256-G-GT 22715109-G-GT P3_b2 11×T***
58977119-A-C 56830972-A-C ***
13865736-A-T 11745030-A-T ***
13799056-G-T 11678350-G-T ***
13799061-G-A 11678355-G-A ***
13847407-G-T 11726701-G-T ***
13830322-A-T 11709616-A-T ***
13830331-C-G 11709625-C-G ***
13803192-G-A 11682486-G-A ***
13805398-A-C 11684692-A-C ***
10024160-C-T 10186551-C-T ***
58819373-C-T 56771498-G-A ***
58819386-TC-T 56771482-AG-A ***
13855620-G-C 11734914-G-C ***
25897206-CA-C 23751059-CA-C P1_Y1 15×A***
28784533-A-G 26638386-A-G ***
22421068-T-G 20259182-T-G DYZ19 ***
13740767-C-G 11585091-C-G ***
19829299-CT-C 17717419-CT-C P5_Prx 27×T***
25487530-G-GA 23341383-G-GA P2_r2 9×A***
25492335-CT-C 23346188-CT-C P2_r2 11×T***
25782216-TA-T 23636069-TA-T P1_b3 10×A***
13485760-T-G 11330084-T-G ***
10024010-G-C 10186401-G-C ***
59004623-GGAAAGAAA-A,G 56858476-GGAAAGAAA-A,G 16×GAAA***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

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