Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > ZZ12 > ZZ19 > Z31644 > FGC13109 > FGC13113 > FGC31444 > ~9316674-T-C > FGC13120 > FGC13122

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
45214
FGC
C0YTG
17781488-A-T 15669608-A-T FGC13122FGC13110 YY***+
21140824-G-A 18978938-G-A FGC13122Y20272 YY+**
21439677-C-T 19277791-C-T FGC13122FGC13149 YY++
13368650-G-C 11212974-G-C FGC13129 *
4537214-G-A 4669173-G-A FGC13115 *
2790584-C-A 2922543-C-A **
21583868-A-T 19421982-A-T **
13558622-A-T 11402946-A-T **
13595418-T-G 11439742-T-G **
13628309-G-A 11472633-G-A **
28639404-G-A 26493257-G-A **
5157166-A-ATAG 5289125-A-ATAG **
15440765-T-C 13328885-T-C **
10001058-CTTTTT-C 10163449-CTTTTT-C 16×T**
14565861-C-T 12454061-C-T **
15291154-C-T 13179253-C-T **
15414542-C-T 13302662-C-T **
21090981-G-A 18929095-G-A **
14203817-C-A 12083111-C-A **
6626632-G-A 6758591-G-A Y20643 FGC44226 **
22495764-C-G 20333878-C-G DYZ19 **
4315625-T-A 4447584-T-A **
8369550-G-T 8501509-G-T **
28684978-G-T 26538831-G-T **
6052081-T-C 6184040-T-C **
5847010-A-G 5978969-A-G **
5837928-T-C 5969887-T-C **
10066361-A-T 10228752-A-T **
23333118-A-T 21171232-A-T **
17062155-G-A 14950275-G-A **
23318601-G-A 21156715-G-A **
23318589-G-A 21156703-G-A **
13333605-G-A 11177929-G-A **
13426658-G-T 11270982-G-T **
22537900-A-G 20376014-A-G **
13460354-C-T 11304678-C-T **
15399377-CG-C 13287497-CG-C **
6999045-T-A 7131004-T-A **
17240462-A-T 15128582-A-T **
13393370-G-T 11237694-G-T **
21556919-C-CTTTTTTTTTTTTTTTTT 19395033-C-CTTTTTTTTTTTTTTTTT 23×T**
17527314-C-A 15415434-C-A **
13515912-G-C 11360236-G-C FGC11636 **
18041044-C-A 15929164-C-A **
17461929-G-T 15350049-G-T **
8972605-T-C 9134996-T-C **
15364940-C-A 13253060-C-A **
17455760-G-T 15343880-G-T **
18254150-T-A 16142270-T-A **
26089678-T-A 23943531-T-A P1_Y1 ***
26089677-C-A 23943530-C-A P1_Y1 ***
25654759-C-T 23508612-C-T P1_b3 ***
26089684-T-A 23943537-T-A P1_Y1 ***
26057233-A-G 23911086-A-G P1_Y1 ***
25662006-T-C 23515859-T-C P1_b3 ***
20424774-A-G 18262888-A-G P5_Dst ***
25662004-A-C 23515857-A-C P1_b3 ***
25654771-A-T 23508624-A-T P1_b3 ***
25654760-T-G 23508613-T-G P1_b3 ***
25369602-C-T 23223455-C-T P2_r2 ***
25405998-G-A 23259851-G-A P2_r2 ***
20576124-A-G 18414238-A-G P5_Dst ***
20576177-C-G 18414291-C-G P5_Dst ***
20576162-G-A 18414276-G-A P5_Dst ***
22642720-G-A 20480834-G-A ***
20576161-G-A 18414275-G-A P5_Dst ***
20576159-C-A 18414273-C-A P5_Dst ***
22644689-A-G 20482803-A-G ***
20522879-C-T 18360993-C-T P5_Dst ***
25384158-T-C 23238011-T-C P2_r2 ***
23445294-A-G 21283408-A-G ***
24157140-C-T 22010993-C-T P3_b1 ***
24491309-G-A 22345162-G-A ***
24614364-G-C 22468217-G-C P3_t2 ***
26119605-T-C 23973458-T-C P1_Y1 ***
25369629-T-C 23223482-T-C P2_r2 ***
26089686-C-A 23943539-C-A P1_Y1 ***
26134328-A-G 23988181-A-G P1_Y1 ***
26119608-G-C 23973461-G-C P1_Y1 ***
20389708-C-G 18227822-C-G P5_Dst ***
28120376-C-T 25974229-C-T P1_b4 ***
28107241-A-T 25961094-A-T P1_Y2 ***
27966986-T-A 25820839-T-A P1_Y2 ***
27916173-G-A 25770026-G-A P1_Y2 ***
20389694-C-T 18227808-C-T P5_Dst ***
27492901-A-T 25346754-A-T P1_Y2 15×T***
27492896-G-A 25346749-G-A P1_Y2 ***
27328037-A-T 25181890-A-T P1_g3 ***
27246366-A-G 25100219-A-G P1_g3 ***
20389707-A-G 18227821-A-G P5_Dst ***
27246357-A-C 25100210-A-C P1_g3 ***
27246355-A-T 25100208-A-T P1_g3 ***
27232441-G-A 25086294-G-A P1_g3 ***
27229709-C-A 25083562-C-A P1_g3 ***
27205713-G-A 25059566-G-A P1_g3 ***
26119611-T-G 23973464-T-G P1_Y1 ***
27021683-T-C 24875536-T-C P1_r4 ***
20389981-C-G 18228095-C-G P5_Dst ***
20399445-C-T 18237559-C-T P5_Dst ***
26835230-T-C 24689083-T-C P1_g2 ***
26291032-A-T 24144885-A-T P1_Y1 ***
26291016-G-A 24144869-G-A P1_Y1 ***
26291015-G-A 24144868-G-A P1_Y1 ***
26291012-T-A 24144865-T-A P1_Y1 ***
26182391-T-A 24036244-T-A P1_Y1 ***
26182385-T-A 24036238-T-A P1_Y1 ***
26182381-T-A 24036234-T-A P1_Y1 ***
26182380-C-A 24036233-C-A P1_Y1 ***
22501927-T-G 20340041-T-G DYZ19 ***
26119613-T-C 23973466-T-C P1_Y1 ***
20807049-A-T 18645163-A-T P4_Gap ***
20807098-G-T 18645212-G-T P4_Gap ***
22495945-A-T 20334059-A-T DYZ19 ***
21008429-C-G 18846543-C-G P4_Dst ***
22332790-T-A 20170904-T-A DYZ19 ***
22332559-T-A 20170673-T-A DYZ19 ***
22325811-G-T 20163925-G-T DYZ19 ***
22316208-T-G 20154322-T-G DYZ19 ***
22308398-T-A 20146512-T-A DYZ19 ***
20989476-T-C 18827590-T-C P4_Dst ***
22292382-A-G 20130496-A-G DYZ19 ***
22282037-T-A 20120151-T-A DYZ19 ***
22282026-G-A 20120140-G-A DYZ19 ***
22273639-T-C 20111753-T-C DYZ19 ***
22265929-A-G 20104043-A-G DYZ19 ***
20989477-C-A 18827591-C-A P4_Dst ***
22265873-G-T 20103987-G-T DYZ19 ***
22251748-C-T 20089862-C-T DYZ19 ***
20989439-A-C 18827553-A-C P4_Dst ***
22251747-A-C 20089861-A-C DYZ19 ***
22234899-C-T 20073013-C-T DYZ19 ***
22234895-G-A 20073009-G-A DYZ19 ***
22234883-T-A 20072997-T-A DYZ19 ***
22050229-A-G 19888343-A-G ***
21338364-A-T 19176478-A-T ***
21215972-T-C 19054086-T-C ***
21151915-G-A 18990029-G-A ***
21008479-T-G 18846593-T-G P4_Dst ***
21008478-T-A 18846592-T-A P4_Dst ***
21008476-T-A 18846590-T-A P4_Dst ***
21008470-T-C 18846584-T-C P4_Dst ***
21008458-T-A 18846572-T-A P4_Dst ***
21008451-T-G 18846565-T-G P4_Dst ***
22332895-C-T 20171009-C-T DYZ19 ***
22337317-A-C 20175431-A-C DYZ19 ***
20807087-T-C 18645201-T-C P4_Gap ***
22367762-G-T 20205876-G-T DYZ19 ***
22495943-T-C 20334057-T-C DYZ19 ***
21008432-A-T 18846546-A-T P4_Dst ***
22491447-G-A 20329561-G-A DYZ19 ***
22491426-G-C 20329540-G-C DYZ19 ***
22427291-A-G 20265405-A-G DYZ19 ***
22427290-T-A 20265404-T-A DYZ19 ***
22421338-G-T 20259452-G-T DYZ19 ***
20807114-C-T 18645228-C-T P4_Gap ***
22421302-C-T 20259416-C-T DYZ19 ***
22420402-G-T 20258516-G-T DYZ19 ***
20815464-C-T 18653578-C-T P4_Gap ***
22420401-G-T 20258515-G-T DYZ19 ***
22367807-G-A 20205921-G-A DYZ19 ***
20908212-T-A 18746326-T-A P4_Dst ***
22366640-C-T 20204754-C-T DYZ19 ***
20930096-C-T 18768210-C-T P4_Dst ***
22365862-C-T 20203976-C-T DYZ19 ***
20930072-G-T 18768186-G-T P4_Dst ***
22365843-A-T 20203957-A-T DYZ19 ***
22361073-A-T 20199187-A-T DYZ19 ***
28391877-C-A 26245730-C-A P1_gr2 ***
22359946-G-T 20198060-G-T DYZ19 ***
22359925-A-T 20198039-A-T DYZ19 ***
22355409-G-T 20193523-G-T DYZ19 ***
22355405-T-C 20193519-T-C DYZ19 ***
22355376-G-T 20193490-G-T DYZ19 ***
22354973-T-C 20193087-T-C DYZ19 ***
20930081-G-A 18768195-G-A P4_Dst ***
20930084-G-T 18768198-G-T P4_Dst ***
22354957-G-C 20193071-G-C DYZ19 ***
22360492-G-T 20198606-G-T DYZ19 ***
28809196-A-T 26663049-A-T ***
28391880-C-T 26245733-C-T P1_gr2 ***
13475500-GC-G 11319824-GC-G ***
10102467-AT-CTC 10264858-AT-CTC ***
10102471-GT-G 10264862-GT-G ***
10102482-GCAG-ACAC 10264873-GCAG-ACAC ***
13129606-ACC-CCT 10619092-ACC-CCT ***
13129671-ATTTA-GCTCT 10619157-ATTTA-GCTCT ***
13460261-GACC-AGCA 11304585-GACC-AGCA ***
13476705-TGGCGACAGC-CGGCAACACA 11321029-TGGCGACAGC-CGGCAACACA ***
10039394-CA-TG 10201785-CA-TG ***
13476828-TCAT-GCGA 11321152-TCAT-GCGA ***
13476861-GCT-G 11321185-GCT-G ***
13486876-ATCAC-GTCAG 11331200-ATCAC-GTCAG ***
13490001-CTTAT-GTTAC 11334325-CTTAT-GTTAC ***
13579563-TC-T 11423887-TC-T ***
13740826-GGG-TAC 11585150-GGG-TAC ***
14213757-GAGAAAGAA-AAGAAAGAG 12093051-GAGAAAGAA-AAGAAAGAG 13×AGAA***
10084308-TAT-AGA 10246699-TAT-AGA ***
10031876-AGGAC-GGGAG 10194267-AGGAC-GGGAG ***
15336050-GT-AA 13224168-GT-AA ***
4846820-GTTGG-TTTGA 4978779-GTTGG-TTTGA ***
5275981-AG-A 5407940-AG-A ***
13474008-CGTA-GGTG 11318332-CGTA-GGTG ***
22257159-CTG-TTT 20095273-CTG-TTT DYZ19 ***
3587292-CT-C 3719251-CT-C 22×T***
3775829-TA-T 3907788-TA-T 12×A***
4005057-GT-G 4137016-GT-G 13×T***
4846681-T-TC 4978640-T-TC ***
5479711-GGCA-G 5611670-GGCA-G ***
10016735-TG-CA 10179126-TG-CA ***
5887227-C-CAAAAA 6019186-C-CAAAAA ***
6024058-ATTTT-A 6156017-ATTTT-A 14×T***
7199342-C-CACTTGTTTTCTT 7331301-C-CACTTGTTTTCTT 24×T***
9342986-GCAA-AGAT 9505377-GCAA-AGAT ***
9342992-CC-GA 9505383-CC-GA ***
9989446-G-AA 10151837-G-AA ***
10003531-CAG-TAA 10165922-CAG-TAA ***
14698478-C-AA 12586544-C-AA ***
15336056-CAT-AAA 13224174-CAT-AAA ***
58990034-C-T 56843887-C-T ***
58889833-GA-AT 56701037-TC-AT ***
58833133-CGTGCT-C 56757732-TAGCAC-T ***
58843676-GTTTCATTAG-ATTCCGTTGA 56747186-CTAATGAAAC-TCAACGGAAT ***
58847166-AGTCTC-A 56743699-AGAGAC-A ***
58847173-T-TG 56743697-G-GC ***
58861974-GCATCCA-CCGATCT 56728891-TGGATGC-AGATCGG ***
58870547-CATTG-GT 56720320-CAATG-AC ***
58882140-T-TTCG 56708730-T-TCGA ***
58890417-ATTTAG-A 56700446-GAACTA-G ***
28701334-TAAATA-T 26555187-TAAATA-T 5×AAATA***
58898183-CC-AT 56692687-GG-AT ***
58909184-GCAT-CCAC 56681684-ATGC-GTGG ***
19692954-C-G 17581074-C-G P5_Prx ***
22340260-T-A 20178374-T-A DYZ19 ***
24175426-A-G 22029279-A-G P3_b1 ***
25275809-A-G 23129662-A-G P2_r1 ***
28809216-A-G 26663069-A-G FGC47204 ***
58833047-CCATTCCAGC-TCACTCTAGT 56757815-GCTGGAATGG-ACTAGAGTGA ***
25369611-CCC-TGA 23223464-CCC-TGA P2_r2 ***
16266883-AG-CT 14155003-AG-CT ***
18440086-TCCAC-T 16328206-TCCAC-T P6_Dst ***
17466627-GCA-ATC 15354747-GCA-ATC ***
18039369-T-TTCTGTTTTTTGGAA 15927489-T-TTCTGTTTTTTGGAA ***
18440010-TTGC-CT 16328130-TTGC-CT P6_Dst ***
18440015-ATATTTCTCTTCTGCT-A 16328135-ATATTTCTCTTCTGCT-A P6_Dst ***
18440037-TTCTCTCCTCTGCCATCC-A 16328157-TTCTCTCCTCTGCCATCC-A P6_Dst ***
18440057-CCCATTGTA-AGGAGTGCC 16328177-CCCATTGTA-AGGAGTGCC P6_Dst ***
18440071-TCCTTCAAAT-GATA 16328191-TCCTTCAAAT-GATA P6_Dst ***
19071305-TGCCTGACATTAGT-GGC 16959425-TGCCTGACATTAGT-GGC ***
24388087-T-TAC 22241940-T-TAC ***
20326007-C-CTTTTTGT 18164121-C-CTTTTTGT P5_Dst 29×T***
22346810-CC-GT 20184924-CC-GT DYZ19 ***
22420398-C-CA 20258512-C-CA DYZ19 ***
22420401-GG-TT 20258515-GG-TT DYZ19 ***
22495764-CTTG-GTT 20333878-CTTG-GTT DYZ19 ***
22505075-CTGA-GAGT 20343189-CTGA-GAGT DYZ19 ***
23195368-TTGTGTGTGTG-T 21033482-TTGTGTGTGTG-T 14×TG***
58990036-T-A 56843889-T-A ***
58989485-G-C 56843338-G-C ***
28391909-T-A 26245762-T-A P1_gr2 ***
58842346-G-C 56748525-C-G ***
58833862-C-A 56757009-G-T ***
58837957-C-A 56752914-G-T ***
58838785-A-C 56752086-T-G ***
58839544-G-T 56751327-C-A ***
58839551-G-T 56751320-C-A ***
58842338-C-G 56748533-G-C ***
58842342-T-A 56748529-A-T ***
58842359-G-C 56748512-C-G ***
58823312-C-T 56767559-G-A ***
58842399-C-T 56748472-G-A ***
58842406-T-G 56748465-A-C ***
58842414-G-C 56748457-C-G ***
58843132-T-G 56747739-A-C ***
58843140-C-A 56747731-G-T ***
58843145-G-A 56747726-C-T ***
58843155-C-G 56747716-G-C ***
58827722-G-C 56763149-C-G ***
58823307-C-G 56767564-G-C ***
58844336-C-T 56746535-G-A ***
28447329-A-T 26301182-A-T P1_gr2 ***
28391910-C-A 26245763-C-A P1_gr2 ***
28391983-C-T 26245836-C-T P1_gr2 ***
28392060-A-T 26245913-A-T P1_gr2 ***
28392085-C-T 26245938-C-T P1_gr2 ***
28447321-A-T 26301174-A-T P1_gr2 ***
28447324-A-T 26301177-A-T P1_gr2 ***
28447328-A-T 26301181-A-T P1_gr2 ***
20231648-G-A 18069762-G-A P5_Dst 4×AGGA***
58823306-C-A 56767565-G-T ***
58823277-C-T 56767594-G-A ***
58823282-C-T 56767589-G-A ***
58823289-T-G 56767582-A-C ***
58823293-A-G 56767578-T-C ***
58823296-C-T 56767575-G-A ***
58823297-C-T 56767574-G-A ***
58823301-C-G 56767570-G-C ***
58844328-T-G 56746543-A-C ***
58844359-T-C 56746512-A-G ***
58989468-A-C 56843321-A-C ***
58913148-G-C 56677723-C-G ***
58889913-C-A 56700958-G-T ***
58890431-T-A 56700440-A-T ***
58893401-A-G 56697470-T-C ***
58909114-T-C 56681757-A-G ***
58910263-C-T 56680608-G-A ***
58911164-T-G 56679707-A-C ***
58912310-T-C 56678561-A-G ***
58916218-A-T 56674653-T-A ***
58874513-C-G 56716358-G-C ***
58916245-A-C 56674626-T-G ***
58916251-C-T 56674620-G-A ***
58916252-C-T 56674619-G-A ***
58916256-C-A 56674615-G-T ***
58916257-C-A 56674614-G-T ***
58916261-C-G 56674610-G-C ***
58985465-A-T 56839318-A-T ***
58881827-C-T 56709044-G-A ***
58861801-G-C 56729070-C-G ***
58845673-C-T 56745198-G-A ***
58854334-C-A 56736537-G-T ***
58845679-G-C 56745192-C-G ***
58845715-T-A 56745156-A-T ***
58847217-G-A 56743654-C-T ***
58847278-T-G 56743593-A-C ***
58847994-C-T 56742877-G-A ***
58852078-G-T 56738793-C-A ***
58854329-C-A 56736542-G-T ***
58854346-T-G 56736525-A-C ***
58859228-A-T 56731643-T-A ***
58855035-C-G 56735836-G-C ***
58855046-C-T 56735825-G-A ***
58855050-T-G 56735821-A-C ***
58855057-C-T 56735814-G-A ***
58855065-T-G 56735806-A-C ***
58855073-A-T 56735798-T-A ***
58859223-A-T 56731648-T-A ***
20389688-G-A 18227802-G-A P5_Dst ***
18618867-A-C 16506987-A-C ***
20080488-C-T 17968608-C-T P5_Dst ***
58990037-T-G 56843890-T-G ***
13460553-A-G 11304877-A-G ***
22984959-G-C 20823073-G-C ***
22355377-G-T 20193491-G-T DYZ19 ***
13484466-C-A 11328790-C-A ***
58873038-T-C 56717833-A-G ***
22332800-T-A 20170914-T-A DYZ19 ***
8901074-C-T 9033033-C-T ***
13223602-G-A 11067926-G-A ***
7394955-A-C 7526914-A-C ***
6162272-T-G 6294231-T-G IR3_Dst ***
22289397-C-T 20127511-C-T DYZ19 ***
13464098-G-T 11308422-G-T ***
7394947-G-A 7526906-G-A ***
13483944-G-A 11328268-G-A ***
2967545-T-G 3099504-T-G ***
13358638-T-C 11202962-T-C ***
13425151-G-C 11269475-G-C ***
3076069-C-T 3208028-C-T 25×T***
13465825-T-G 11310149-T-G ***
25954141-T-A 23807994-T-A P1_Y1 ***
58842325-ATTCGAA-GTT 56748540-TTCGAAT-AAC ***
13223603-G-A 11067927-G-A ***
22292398-A-G 20130512-A-G DYZ19 ***
58823275-C-T 56767596-G-A ***
58845108-CTCCATTCAATTCCTT-C 56745740-GGAATGGAAAGGAATT-G ***
13464117-A-T 11308441-A-T ***
13441396-A-T 11285720-A-T ***
13464128-A-G 11308452-A-G ***
9976206-T-C 10138597-T-C ***
13464130-G-C 11308454-G-C ***
13407243-T-A 11251567-T-A ***
58911401-C-G 56679470-G-C ***
58990026-A-C 56843879-A-C ***
13475472-C-G 11319796-C-G ***
3023898-A-G 3155857-A-G ***
3140083-C-T 3272042-C-T ***
22365844-C-G 20203958-C-G DYZ19 ***
4846845-A-G 4978804-A-G ***
4846805-G-A 4978764-G-A ***
4846810-C-T 4978769-C-T ***
4846820-G-T 4978779-G-T ***
4846824-G-A 4978783-G-A ***
4846829-A-G 4978788-A-G ***
4846840-G-A 4978799-G-A ***
4846877-G-A 4978836-G-A ***
4846731-T-C 4978690-T-C ***
5053894-T-A 5185853-T-A ***
5100348-C-T 5232307-C-T ***
5275986-T-A 5407945-T-A ***
5369980-A-G 5501939-A-G ***
5642986-A-G 5774945-A-G ***
5883408-A-G 6015367-A-G ***
5887228-C-A 6019187-C-A 18×A***
4846746-A-G 4978705-A-G ***
4846710-C-G 4978669-C-G ***
3277315-T-A 3409274-T-A ***
3902578-T-A 4034537-T-A ***
3372793-A-G 3504752-A-G ***
3389801-A-T 3521760-A-T ***
3870185-T-A 4002144-T-A ***
3883314-G-A 4015273-G-A ***
3902537-T-A 4034496-T-A ***
3902558-A-T 4034517-A-T ***
3902586-A-T 4034545-A-T ***
4846685-C-A 4978644-C-A ***
3902611-A-G 4034570-A-G ***
4019849-C-A 4151808-C-A 16×A***
4129504-G-A 4261463-G-A ***
4431462-C-T 4563421-C-T ***
4480053-G-A 4612012-G-A ***
4623237-A-G 4755196-A-G ***
4818556-C-A 4950515-C-A ***
9944244-T-C 10106635-T-C ***
19071328-CCACAGG-TCGCTT 16959448-CCACAGG-TCGCTT ***
6092834-C-T 6224793-C-T ***
58843661-A-G 56747210-T-C ***
5786608-C-CAAAAA 5918567-C-CAAAAA 20×A***
20389983-G-A 18228097-G-A P5_Dst ***
20522894-G-T 18361008-G-T P5_Dst ***
22504827-T-C 20342941-T-C DYZ19 ***
58843749-TA-CG 56747121-TA-CG ***
58843653-T-G 56747218-A-C ***
22292361-A-T 20130475-A-T DYZ19 ***
22252974-A-T 20091088-A-T DYZ19 ***
22292344-G-T 20130458-G-T DYZ19 ***
13483894-G-T 11328218-G-T ***
22366643-T-G 20204757-T-G DYZ19 ***
22364443-C-A 20202557-C-A DYZ19 ***
17081218-AC-TA 14969338-AC-TA ***
22352931-A-T 20191045-A-T DYZ19 ***
8972629-T-A 9135020-T-A ***
58909170-C-G 56681701-G-C ***
22365985-C-A 20204099-C-A DYZ19 ***
13253729-C-A 11098053-C-A ***
58843832-T-A 56747039-A-T ***
22268233-G-T 20106347-G-T DYZ19 ***
22366630-A-G 20204744-A-G DYZ19 ***
22366658-G-T 20204772-G-T DYZ19 ***
58823172-C-T 56767699-G-A ***
22113187-C-CAAAAAA 19951301-C-CAAAAAA 23×A***
9930577-T-C 10092968-T-C ***
22251635-TA-GT 20089749-TA-GT DYZ19 ***
22365984-G-T 20204098-G-T DYZ19 ***
22256954-G-C 20095068-G-C DYZ19 ***
20522768-C-T 18360882-C-T P5_Dst ***
20522788-C-T 18360902-C-T P5_Dst ***
20522818-A-G 18360932-A-G P5_Dst ***
20522845-A-C 18360959-A-C P5_Dst ***
20522848-G-T 18360962-G-T P5_Dst ***
20522853-A-C 18360967-A-C P5_Dst ***
10102464-C-G 10264855-C-G ***
13253741-G-T 11098065-G-T ***
58909169-A-T 56681702-T-A ***
22292329-G-T 20130443-G-T DYZ19 ***
13130150-T-A 10619636-T-A ***
13130171-T-A 10619657-T-A ***
13130183-T-G 10619669-T-G ***
13130184-G-C 10619670-G-C ***
13130187-A-T 10619673-A-T ***
22273686-C-A 20111800-C-A DYZ19 ***
22292340-T-A 20130454-T-A DYZ19 ***
10101360-G-A 10263751-G-A ***
22292355-C-A 20130469-C-A DYZ19 ***
22292379-C-T 20130493-C-T DYZ19 ***
22292384-G-T 20130498-G-T DYZ19 ***
22292393-A-T 20130507-A-T DYZ19 ***
22360018-G-T 20198132-G-T DYZ19 ***
58836968-C-A 56753903-G-T ***
58909168-G-T 56681703-C-A ***
13130145-T-A 10619631-T-A ***
6473334-G-GA 6605293-G-GA 13×A***
13253705-TTCA-CTCT 11098029-TTCA-CTCT ***
58823265-A-T 56767606-T-A ***
13488267-AAGACGC-GAGATGT 11332591-AAGACGC-GAGATGT ***
13222207-A-G 11066531-A-G ***
22248457-G-T 20086571-G-T DYZ19 ***
22268228-C-A 20106342-C-A DYZ19 ***
58844027-T-TC 56746843-A-AG ***
13728612-C-T 11572936-C-T ***
13464112-C-G 11308436-C-G ***
6162285-C-T 6294244-C-T IR3_Dst ***
22282027-A-T 20120141-A-T DYZ19 ***
58843147-C-T 56747724-G-A ***
13483929-TCCC-GCCT 11328253-TCCC-GCCT ***
22360737-T-C 20198851-T-C DYZ19 ***
22360739-A-T 20198853-A-T DYZ19 ***
2845850-GAAT-AAAA 2977809-GAAT-AAAA ***
6586785-AC-CCT 6718744-AC-CCT ***
6061245-A-G 6193204-A-G ***
6162273-A-C 6294232-A-C IR3_Dst ***
20080470-C-T 17968590-C-T P5_Dst ***
15248229-T-C 13136315-T-C ***
13745370-G-A 11589694-G-A ***
14154012-A-C 12033306-A-C ***
14371771-A-C 12251067-A-C ***
14518914-T-A 12407115-T-A ***
14565951-T-C 12454151-T-C ***
14909399-C-T 12797466-C-T ***
15340014-C-G 13228132-C-G ***
13724989-G-A 11569313-G-A ***
15545170-A-T 13433290-A-T ***
15673490-C-T 13561610-C-T ***
15673502-C-T 13561622-C-T ***
15780118-C-T 13668238-C-T ***
15785994-T-C 13674114-T-C ***
15835706-C-T 13723826-C-T ***
15912178-A-G 13800298-A-G ***
13726345-G-A 11570669-G-A ***
13724984-C-A 11569308-C-A ***
15912183-C-T 13800303-C-T ***
13488261-G-C 11332585-G-C ***
13479431-A-G 11323755-A-G ***
13481615-G-T 11325939-G-T ***
13482571-T-A 11326895-T-A ***
13483958-A-G 11328282-A-G ***
13485257-T-G 11329581-T-G ***
13485317-G-C 11329641-G-C ***
13492052-G-A 11336376-G-A ***
13724979-C-A 11569303-C-A ***
13535217-C-G 11379541-C-G ***
13535667-A-G 11379991-A-G ***
13535669-A-G 11379993-A-G ***
13535677-A-G 11380001-A-G ***
13548424-A-T 11392748-A-T ***
13701112-T-A 11545436-T-A ***
13710659-C-A 11554983-C-A ***
15912179-C-T 13800299-C-T ***
15912184-T-C 13800304-T-C ***
13470902-C-A 11315226-C-A ***
19686838-G-T 17574958-G-T P5_Prx ***
19071328-C-T 16959448-C-T ***
19174155-G-T 17062275-G-T ***
19255322-A-G 17143442-A-G ***
19324880-G-C 17213000-G-C ***
19560230-T-G 17448350-T-G ***
19686684-T-C 17574804-T-C P5_Prx ***
19686851-C-T 17574971-C-T P5_Prx ***
18495482-T-C 16383602-T-C P6_Dst ***
19686853-C-A 17574973-C-A P5_Prx ***
19766528-A-G 17654648-A-G P5_Prx ***
19766531-A-T 17654651-A-T P5_Prx ***
19847587-T-A 17735707-T-A P5_Prx ***
20025197-A-T 17913317-A-T P5_Prx ***
20080423-A-T 17968543-A-T P5_Dst ***
20080460-T-C 17968580-T-C P5_Dst ***
13467120-C-T 11311444-C-T ***
18495475-C-T 16383595-C-T P6_Dst ***
15912185-G-A 13800305-G-A ***
17081219-C-A 14969339-C-A 14×TA***
15912198-T-C 13800318-T-C ***
15916457-C-T 13804577-C-T ***
16058589-A-G 13946709-A-G ***
16351750-G-A 14239870-G-A ***
16357007-G-C 14245127-G-C ***
17081218-A-T 14969338-A-T ***
17554299-G-A 15442419-G-A ***
18495455-T-A 16383575-T-A P6_Dst ***
17837137-T-C 15725257-T-C ***
17988499-C-A 15876619-C-A P7_Prx ***
18218811-G-T 16106931-G-T ***
18230287-T-A 16118407-T-A ***
18440010-T-C 16328130-T-C P6_Dst ***
18440057-C-A 16328177-C-A P6_Dst ***
18440059-C-G 16328179-C-G P6_Dst ***
13470913-C-A 11315237-C-A ***
13470896-C-A 11315220-C-A ***
6210061-C-A 6342020-C-A IR3_Dst ***
9342992-C-G 9505383-C-G ***
9040848-G-C 9203239-G-C ***
9040870-A-G 9203261-A-G ***
9193368-G-T 9355759-G-T ***
9302418-T-G 9464809-T-G ***
9342987-C-G 9505378-C-G ***
9342989-A-T 9505380-A-T ***
9342993-C-A 9505384-C-A ***
8724322-A-T 8856281-A-T ***
9350154-T-C 9512545-T-C ***
9420130-A-G 9582521-A-G ***
9427910-G-C 9590301-G-C ***
9428953-T-C 9591344-T-C ***
9587115-C-A 9749506-C-A IR3_Prx ***
9636660-G-T 9799051-G-T IR3_Prx ***
9663115-A-C 9825506-A-C IR3_Prx ***
8786091-G-A 8918050-G-A ***
8324181-A-G 8456140-A-G ***
9663118-G-T 9825509-G-T IR3_Prx ***
6340500-A-G 6472459-A-G IR3_Dst ***
6340442-C-A 6472401-C-A IR3_Dst ***
6340455-T-G 6472414-T-G IR3_Dst ***
6340477-A-T 6472436-A-T IR3_Dst ***
6340495-A-C 6472454-A-C IR3_Dst ***
6340498-A-C 6472457-A-C IR3_Dst ***
6340499-C-T 6472458-C-T IR3_Dst ***
6340503-T-C 6472462-T-C IR3_Dst ***
7757935-G-T 7889894-G-T ***
6340507-C-G 6472466-C-G IR3_Dst ***
6534800-C-T 6666759-C-T ***
7004925-G-T 7136884-G-T ***
7256965-C-T 7388924-C-T ***
7350802-C-T 7482761-C-T ***
7394975-A-C 7526934-A-C ***
7580346-G-T 7712305-G-T ***
9663117-G-T 9825508-G-T IR3_Prx ***
9663132-C-T 9825523-C-T IR3_Prx ***
13467116-A-C 11311440-A-C ***
13460213-A-G 11304537-A-G ***
13222270-G-A 11066594-G-A ***
13222643-G-A 11066967-G-A ***
13252520-G-A 11096844-G-A ***
13282913-G-A 11127237-G-A ***
13327907-C-T 11172231-C-T ***
13424387-A-T 11268711-A-T ***
13461670-C-A 11305994-C-A ***
13130198-G-A 10619684-G-A ***
13462005-T-A 11306329-T-A ***
13463682-C-T 11308006-C-T ***
13463689-C-T 11308013-C-T ***
13464107-C-T 11308431-C-T ***
13464127-C-A 11308451-C-A ***
13464146-G-T 11308470-G-T ***
13466757-C-A 11311081-C-A ***
13203961-T-G 11048285-T-G ***
13130172-C-G 10619658-C-G ***
9663141-G-T 9825532-G-T IR3_Prx ***
13110491-C-A 10599977-C-A ***
9690923-G-T 9853314-G-T IR3_Prx ***
9911242-T-A 10073633-T-A ***
9970646-G-A 10133037-G-A ***
10026221-T-G 10188612-T-G ***
10052443-C-T 10214834-C-T ***
10084314-A-T 10246705-A-T ***
13110475-G-A 10599961-G-A ***
13110805-A-C 10600291-A-C ***
13130159-A-C 10619645-A-C ***
13110880-G-C 10600366-G-C ***
13112531-T-A 10602017-T-A ***
13112561-T-G 10602047-T-G ***
13112591-C-A 10602077-C-A ***
13129599-C-A 10619085-C-A ***
13129688-G-T 10619174-G-T ***
13130155-C-G 10619641-C-G ***
17781481-A-ATTTTT 15669601-A-ATTTTT ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

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