Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > ZZ12 > ZZ19 > Z34609 > Z2571 > FGC11380 > FGC11388 > FGC11414 > FGC11407

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFGC
WBAFF
Manual
Edits
17263457-C-T 15151577-C-T FGC12959 YY+
24417082-AAG-A 22270935-AAG-A FGC12971 +
17978074-C-T 15866194-C-T FGC12963 Y+
6791995-T-TA 6923954-T-TA FGC12970 +
17920681-G-A 15808801-G-A FGC12962 YY+
18984167-G-T 16872287-G-T FGC12964 YY+
17904460-A-G 15792580-A-G FGC12961 YY+
17805727-C-A 15693847-C-A FGC12960 YY+
19270805-T-G 17158925-T-G FGC12965 YY+
20839342-C-G 18677456-C-G FGC12966 P4_Gap +
7852218-C-A 7984177-C-A FGC12957 YY+
22638892-C-T 20477006-C-T FGC12968 Y+
22718690-G-A 20556804-G-A FGC12969 YY+
21805615-T-C 19643729-T-C FGC12967 Y+
6934687-G-A 7066646-G-A FGC12955 YY*
16709698-G-T 14597818-G-T FGC12958 Y*
7300285-A-T 7432244-A-T FGC12956 Y*
5364915-T-C 5496874-T-C FGC12954 *
5242410-G-C 5374369-G-C FGC12953 *
15672565-A-G 13560685-A-G **
17618867-A-G 15506987-A-G **
18042110-C-G 15930230-C-G **
4521772-C-T 4653731-C-T **
3279614-G-A 3411573-G-A **
3215508-A-T 3347467-A-T **
3022096-A-G 3154055-A-G **
14314276-G-T 12193570-G-T **
14741472-C-A 12629540-C-A **
3869134-G-A 4001093-G-A **
15098587-A-G 12986675-A-G **
7002947-G-T 7134906-G-T **
15180003-T-G 13068089-T-G **
7511010-C-CT 7642969-C-CT 13×T**
17662535-GGGAT-G 15550655-GGGAT-G 7×GGAT**
4136641-TACAC-T 4268600-TACAC-T 20×AC**
13434851-T-G 11279175-T-G **
23076962-G-T 20915076-G-T **
13465690-G-A 11310014-G-A **
19098185-C-A 16986305-C-A **
8238268-T-C 8370227-T-C **
3869133-T-C 4001092-T-C **
21283654-CTCCTCCTCCTCTTTGTT-C 19121768-CTCCTCCTCCTCTTTGTT-C **
18958141-G-T 16846261-G-T **
21184484-G-A 19022598-G-A **
10033516-T-G 10195907-T-G **
21234902-T-A 19073016-T-A **
8733271-G-A 8865230-G-A **
10022318-A-AAATAAATG 10184709-A-AAATAAATG **
58843760-C-T 56747111-G-A ***
26475022-G-T 24328875-G-T P1_Y1 ***
27234958-T-A 25088811-T-A P1_g3 ***
27234944-T-A 25088797-T-A P1_g3 ***
27234943-T-A 25088796-T-A P1_g3 ***
27234934-T-C 25088787-T-C P1_g3 ***
26560722-T-G 24414575-T-G P1_g2 ***
26477031-G-C 24330884-G-C P1_Y1 ***
26477022-C-T 24330875-C-T P1_Y1 ***
26234474-A-T 24088327-A-T P1_Y1 ***
26477014-G-A 24330867-G-A P1_Y1 ***
26477013-G-A 24330866-G-A P1_Y1 ***
26475024-G-T 24328877-G-T P1_Y1 ***
58823689-G-T 56767182-C-A ***
26386501-G-A 24240354-G-A P1_Y1 ***
26386706-G-T 24240559-G-T P1_Y1 ***
26364265-G-T 24218118-G-T P1_Y1 ***
27234970-G-A 25088823-G-A P1_g3 ***
58828858-C-G 56762013-G-C ***
58834452-T-G 56756419-A-C ***
58840645-A-C 56750226-T-G ***
58843552-T-C 56747319-A-G ***
26364249-A-G 24218102-A-G P1_Y1 ***
58843670-C-A 56747201-G-T ***
58843712-T-G 56747159-A-C ***
26364244-C-A 24218097-C-A P1_Y1 ***
26364243-G-A 24218096-G-A P1_Y1 ***
58843751-A-G 56747120-T-C ***
58827713-C-A 56763158-G-T ***
58823674-G-T 56767197-C-A ***
27234971-C-A 25088824-C-A P1_g3 ***
28803668-G-A 26657521-G-A ***
27881981-T-G 25735834-T-G P1_Y2 ***
28061325-C-T 25915178-C-T P1_Y2 ***
28061340-A-G 25915193-A-G P1_Y2 ***
28061356-T-A 25915209-T-A P1_Y2 ***
28061358-A-T 25915211-A-T P1_Y2 ***
27881964-C-A 25735817-C-A P1_Y2 ***
28253222-G-A 26107075-G-A P1_b4 ***
27881953-A-T 25735806-A-T P1_Y2 ***
27881951-G-A 25735804-G-A P1_Y2 ***
28803660-G-A 26657513-G-A ***
27734952-C-T 25588805-C-T P1_Y2 ***
27734947-A-G 25588800-A-G P1_Y2 ***
27398915-A-T 25252768-A-T P1_g3 ***
28803664-T-A 26657517-T-A ***
28803673-G-A 26657526-G-A ***
27881978-C-T 25735831-C-T P1_Y2 ***
28803676-G-A 26657529-G-A ***
28803678-T-A 26657531-T-A ***
27378749-G-A 25232602-G-A P1_g3 ***
58823620-G-C 56767251-C-G ***
58823656-G-C 56767215-C-G ***
27343791-A-G 25197644-A-G P1_g3 ***
27343789-G-T 25197642-G-T P1_g3 ***
27343776-G-T 25197629-G-T P1_g3 ***
58823670-T-C 56767201-A-G ***
27343759-T-A 25197612-T-A P1_g3 ***
27343756-C-T 25197609-C-T P1_g3 ***
27343755-C-T 25197608-C-T P1_g3 ***
27247767-A-C 25101620-A-C P1_g3 ***
58823671-G-C 56767200-C-G ***
58912477-G-C 56678394-C-G 4×CATTC***
26099440-C-T 23953293-C-T P1_Y1 ***
26234472-T-C 24088325-T-C P1_Y1 ***
22297343-T-A 20135457-T-A DYZ19 ***
22263781-T-G 20101895-T-G DYZ19 ***
22265810-C-G 20103924-C-G DYZ19 ***
22297304-C-A 20135418-C-A DYZ19 ***
22297310-A-T 20135424-A-T DYZ19 ***
22297331-G-A 20135445-G-A DYZ19 ***
22297340-C-T 20135454-C-T DYZ19 ***
22309377-T-G 20147491-T-G DYZ19 ***
22234441-T-G 20072555-T-G DYZ19 ***
22337607-A-G 20175721-A-G DYZ19 ***
22337615-C-T 20175729-C-T DYZ19 ***
22343084-A-C 20181198-A-C DYZ19 ***
22343196-T-C 20181310-T-C DYZ19 ***
22360408-T-C 20198522-T-C DYZ19 ***
22365853-G-A 20203967-G-A DYZ19 ***
22367644-C-G 20205758-C-G DYZ19 ***
22247386-C-A 20085500-C-A DYZ19 ***
22224527-C-A 20062641-C-A DYZ19 ***
22499896-C-T 20338010-C-T DYZ19 ***
20672738-G-A 18510852-G-A P4_Prx ***
20449442-C-A 18287556-C-A P5_Dst ***
20530693-A-T 18368807-A-T P5_Dst ***
20672717-C-T 18510831-C-T P4_Prx ***
20672728-A-G 18510842-A-G P4_Prx ***
20672729-C-A 18510843-C-A P4_Prx ***
20672732-G-A 18510846-G-A P4_Prx ***
20672762-G-A 18510876-G-A P4_Prx ***
21677672-A-T 19515786-A-T ***
21057020-T-C 18895134-T-C ***
21084335-G-A 18922449-G-A 8×TA***
21184481-C-G 19022595-C-G ***
21234907-A-G 19073021-A-G ***
21234908-G-A 19073022-G-A ***
21349187-T-C 19187301-T-C ***
21601466-A-G 19439580-A-G ***
22495804-A-C 20333918-A-C DYZ19 ***
22499897-A-G 20338011-A-G DYZ19 ***
26234410-A-T 24088263-A-T P1_Y1 ***
58846765-C-G 56744106-G-C ***
25664565-C-G 23518418-C-G P1_b3 ***
25896721-G-C 23750574-G-C P1_Y1 ***
25896723-T-A 23750576-T-A P1_Y1 ***
25963867-C-T 23817720-C-T P1_Y1 34×T***
26057086-A-G 23910939-A-G P1_Y1 ***
26091888-T-G 23945741-T-G P1_Y1 ***
26127930-T-A 23981783-T-A P1_Y1 ***
25356328-C-T 23210181-C-T P2_r2 ***
26182197-G-T 24036050-G-T P1_Y1 ***
26182218-T-G 24036071-T-G P1_Y1 ***
26234398-G-A 24088251-G-A P1_Y1 ***
26234400-C-G 24088253-C-G P1_Y1 ***
26234403-A-T 24088256-A-T P1_Y1 ***
26234404-A-T 24088257-A-T P1_Y1 ***
26234409-A-T 24088262-A-T P1_Y1 ***
25651608-C-T 23505461-C-T P1_b3 ***
25114387-A-G 22968240-A-G g1 ***
22504773-C-G 20342887-C-G DYZ19 ***
24295364-T-A 22149217-T-A P3_t1 9×AC***
22530300-G-T 20368414-G-T ***
22756590-C-T 20594704-C-T ***
23094787-A-T 20932901-A-T ***
23095909-A-G 20934023-A-G ***
23321473-G-T 21159587-G-T ***
23321515-A-G 21159629-A-G ***
24295380-C-T 22149233-C-T P3_t1 ***
24533823-G-T 22387676-G-T P3_t2 ***
24295385-C-T 22149238-C-T P3_t1 ***
24533779-A-C 22387632-A-C P3_t2 ***
24533791-C-T 22387644-C-T P3_t2 ***
24533792-T-C 22387645-T-C P3_t2 ***
24533795-T-A 22387648-T-A P3_t2 ***
24533803-T-C 22387656-T-C P3_t2 ***
24533817-G-T 22387670-G-T P3_t2 ***
58846760-C-T 56744111-G-A ***
58870754-T-C 56720117-A-G ***
58846767-T-G 56744104-A-C ***
14835327-A-AT 12723394-A-AT 14×T***
13701443-TC-GG 11545767-TC-GG ***
13701767-TACC-GAGT 11546091-TACC-GAGT ***
13832645-CTC-GTG 11711939-CTC-GTG ***
13848875-ATA-CTG 11728169-ATA-CTG ***
13848882-TGAAT-GGAAG 11728176-TGAAT-GGAAG ***
13884529-CAA-C 11763823-CAA-C 17×A***
14435833-CACGTTATTGA-TACATTACTGG 12315106-CACGTTATTGA-TACATTACTGG ***
14866151-G-GTGTA 12754221-G-GTGTA ***
13535656-T-TACAC 11379980-T-TACAC ***
15865946-C-CTTTTTTTTTTTTTTTTT 13754066-C-CTTTTTTTTTTTTTTTTT 37×T***
16026649-TGTGC-GGTGG 13914769-TGTGC-GGTGG ***
16314663-A-AT 14202783-A-AT 8×T***
16768601-CTT-C 14656721-CTT-C 17×T***
17580765-AT-A 15468885-AT-A 16×T***
19138172-T-TTA 17026292-T-TTA ***
19565634-TA-T 17453754-TA-T 14×A***
13694707-CAATGA-C 11539031-CAATGA-C ***
13535651-A-ATGTGTGTGTG 11379975-A-ATGTGTGTGTG ***
19646396-TG-T 17534516-TG-T P5_Prx ***
13480177-GAAGAGTCC-TAAATGTTA 11324501-GAAGAGTCC-TAAATGTTA ***
13469045-AC-GG 11313369-AC-GG ***
13470633-GC-AT 11314957-GC-AT ***
13470649-TGG-GGA 11314973-TGG-GGA ***
13470657-TCT-CGA 11314981-TCT-CGA ***
13473096-AG-TA 11317420-AG-TA ***
13475454-CAAA-AAAG 11319778-CAAA-AAAG ***
13480154-TCCCCGTCTAGGC-CGCCCTTGTGGGG 11324478-TCCCCGTCTAGGC-CGCCCTTGTGGGG ***
13481949-TCCTA-ACATG 11326273-TCCTA-ACATG ***
13498123-CA-TG 11342447-CA-TG ***
13482969-TATAGAGAAGAGTCCT-CCTAGACAAGAGTTAC 11327293-TATAGAGAAGAGTCCT-CCTAGACAAGAGTTAC ***
13483020-TGC-AG 11327344-TGC-AG ***
13483145-GATAC-AATAT 11327469-GATAC-AATAT ***
13483619-CAGAGTTA-GAGATATC 11327943-CAGAGTTA-GAGATATC ***
13485342-CAA-AAAT 11329666-CAA-AAAT ***
13485412-TGCCGTA-AGCCTTG 11329736-TGCCGTA-AGCCTTG ***
13485435-TAAAG-AAAAT 11329759-TAAAG-AAAAT ***
13485854-CCGCCTG-TCACCTC 11330178-CCGCCTG-TCACCTC ***
19646362-ACTTAGTAT-TGTTATCAG 17534482-ACTTAGTAT-TGTTATCAG P5_Prx ***
20989148-CACACACATAT-C 18827262-CACACACATAT-C P4_Dst ***
13466988-CGG-TGA 11311312-CGG-TGA ***
58843694-GC-CG 56747176-GC-CG ***
25896654-ACCAACAGTAGTGG-TGCAA 23750507-ACCAACAGTAGTGG-TGCAA P1_Y1 ***
25896670-CT-C 23750523-CT-C P1_Y1 ***
25896675-TATGA-AAAG 23750528-TATGA-AAAG P1_Y1 ***
25896685-GAGGGGCTTATCATAGATTCA-G 23750538-GAGGGGCTTATCATAGATTCA-G P1_Y1 ***
25896709-TTCATAA-CC 23750562-TTCATAA-CC P1_Y1 ***
58822239-TTT-GTC 56768630-AAA-GAC ***
58840473-GTCAATTCCT-TTGCATTACA 56750389-AGGAATTGAC-TGTAATGCAA ***
58847217-GCC-AAT 56743652-GGC-ATT ***
23832825-TTTT-CTCC 21670939-TTTT-CTCC ***
58861791-GATGC-TATGA 56729076-GCATC-TCATA ***
58861963-T-TAGA 56728907-A-ATCT ***
58861976-ATC-GAT 56728893-GAT-ATC ***
58891342-ATAGCATTCCATTG-A 56699515-GCAATGGAATGCTA-G ***
58910228-CAT-TATC 56680641-ATG-GATA ***
58910250-ATCC-CTCT 56680618-GGAT-AGAG ***
58991269-CTGGGC-GTTGGA 56845122-CTGGGC-GTTGGA ***
25896647-ATC-A 23750500-ATC-A P1_Y1 ***
23544835-GTTTTTTTTTTC-G 21382949-GTTTTTTTTTTC-G 10×T***
21099740-C-CTT 18937854-C-CTT 16×T***
22235000-AAT-CAC 20073114-AAT-CAC DYZ19 ***
21234907-AG-GA 19073021-AG-GA ***
21283663-C-CT 19121777-C-CT ***
21283667-TTG-T 19121781-TTG-T ***
21477273-TCATC-T 19315387-TCATC-T ***
21477280-T-TC 19315394-T-TC ***
22215217-CTT-C 20053331-CTT-C 17×T***
22234444-AA-TG 20072558-AA-TG DYZ19 ***
22236518-GATGG-TAAGA 20074632-GATGG-TAAGA DYZ19 ***
23253920-ACATC-GATCT 21092034-ACATC-GATCT ***
22245707-ACTC-CCT 20083821-ACTC-CCT DYZ19 ***
22250340-ACAA-GCAC 20088454-ACAA-GCAC DYZ19 ***
22251566-ATTTAG-CCTCAC 20089680-ATTTAG-CCTCAC DYZ19 ***
22292139-TTCC-CTCT 20130253-TTCC-CTCT DYZ19 ***
22344147-TGG-CGA 20182261-TGG-CGA DYZ19 ***
22362678-ACG-TCA 20200792-ACG-TCA DYZ19 ***
22703626-GAAAGAAAG-AAAAAAAAA 20541740-GAAAGAAAG-AAAAAAAAA ***
22756598-TGTG-CA 20594712-TGTG-CA ***
13469013-GAAG-CAAC 11313337-GAAG-CAAC ***
13466964-TAGAC-GAGAG 11311288-TAGAC-GAGAG ***
58846769-A-G 56744102-T-C ***
58890764-T-A 56700107-A-T ***
58889913-C-G 56700958-G-C ***
58889915-C-T 56700956-G-A ***
58889921-C-A 56700950-G-T ***
58889922-G-T 56700949-C-A ***
58889930-C-T 56700941-G-A ***
58890749-C-T 56700122-G-A ***
58890760-C-T 56700111-G-A ***
58895456-C-G 56695415-G-C ***
58889891-C-T 56700980-G-A ***
58895457-G-C 56695414-C-G ***
58898137-A-T 56692734-T-A ***
58898139-C-A 56692732-G-T ***
58905733-T-A 56685138-A-T ***
58907097-T-G 56683774-A-C ***
58907101-A-T 56683770-T-A ***
58910495-A-T 56680376-T-A ***
58889908-T-A 56700963-A-T ***
58889830-C-T 56701041-G-A ***
58995224-G-T 56849077-G-T ***
58859196-G-T 56731675-C-A ***
58847150-C-T 56743721-G-A ***
58847213-T-G 56743658-A-C ***
58848499-G-T 56742372-C-A ***
58848565-G-T 56742306-C-A ***
58851847-C-T 56739024-G-A ***
58852260-C-A 56738611-G-T ***
58856588-T-A 56734283-A-T ***
58862508-C-T 56728363-G-A ***
58883917-G-T 56706954-C-A ***
20449425-T-A 18287539-T-A P5_Dst ***
58872259-C-A 56718612-G-T 4×CCATT***
58872436-A-C 56718435-T-G ***
58872437-C-T 56718434-G-A ***
58872491-C-G 56718380-G-C ***
58872506-C-G 56718365-G-C ***
58877055-C-T 56713816-G-A ***
58883915-C-A 56706956-G-T ***
58911306-T-C 56679565-A-G ***
58995227-G-T 56849080-G-T ***
13461835-CA-TG 11306159-CA-TG ***
10102448-AA-TG 10264839-AA-TG ***
7131385-GACCCC-G 7263344-GACCCC-G ***
9956357-CGCC-TGCA 10118748-CGCC-TGCA ***
10022394-TTAGT-CTAGC 10184785-TTAGT-CTAGC ***
10029194-CA-C 10191585-CA-C ***
10030599-TAGC-AAGT 10192990-TAGC-AAGT ***
10070376-AG-TT 10232767-AG-TT ***
10102432-TGC-T 10264823-TGC-T ***
13138697-ACTAGG-A 10628183-ACTAGG-A ***
6005086-ATGAAC-CCGATCT 6137045-ATGAAC-CCGATCT ***
13138718-TTGTATTCCATCCCAT-C 10628204-TTGTATTCCATCCCAT-C ***
13140070-ACTCGAGTGCGTGTGATTC-A 10629556-ACTCGAGTGCGTGTGATTC-A ***
13143949-GA-CC 10633435-GA-CC ***
13252700-AG-A 11097024-AG-A ***
13365795-A-AT 11210119-A-AT 16×T***
13441070-CA-TG 11285394-CA-TG ***
13461328-GC-TG 11305652-GC-TG ***
6454448-G-GAAAAAA 6586407-G-GAAAAAA 12×A***
4287922-G-GA 4419881-G-GA 9×A***
58995231-C-A 56849084-C-A ***
10001058-CT-C 10163449-CT-C 16×T***
58995232-T-A 56849085-T-A ***
6634275-G-TT 6766234-G-TT ***
26391527-T-TACAC 24245380-T-TACAC P1_Y1 21×AC***
13307318-CTG-ATA 11151642-CTG-ATA ***
17648009-CA-C 15536129-CA-C 17×A***
19138349-CTATA-C 17026469-CTATA-C 11×TA***
10008082-GA-AC 10170473-GA-AC ***
13487241-GGCAGC-CGGAGG 11331565-GGCAGC-CGGAGG ***
3869133-TG-CA 4001092-TG-CA ***
5486154-TATATTATA-T 5618113-TATATTATA-T ***
14867092-C-CT 12755162-C-CT 17×T***
3765760-C-CA 3897719-C-CA 12×A***
28602195-AT-A 26456048-AT-A 15×T***
4651422-G-GA 4783381-G-GA 11×A***
17085721-CT-C 14973841-CT-C 20×T***
15785989-AT-A 13674109-AT-A 11×T***
2747782-AATAAAT-TAAATAA 2879741-AATAAAT-TAAATAA ***
20449429-T-C 18287543-T-C P5_Dst ***
19386653-T-C 17274773-T-C ***
20449406-A-T 18287520-A-T P5_Dst ***
5703106-A-T 5835065-A-T ***
4289146-A-T 4421105-A-T ***
5073702-A-T 5205661-A-T 10×AT***
5074450-G-T 5206409-G-T ***
5207478-T-C 5339437-T-C ***
5224894-G-A 5356853-G-A ***
5365135-C-T 5497094-C-T ***
5703107-C-G 5835066-C-G ***
3754500-G-T 3886459-G-T ***
5741120-G-T 5873079-G-T ***
5804885-C-T 5936844-C-T ***
6009402-A-T 6141361-A-T ***
6040942-C-A 6172901-C-A ***
6160955-G-A 6292914-G-A IR3_Dst ***
6234131-T-A 6366090-T-A IR3_Dst ***
6234132-G-A 6366091-G-A IR3_Dst ***
3823789-G-T 3955748-G-T ***
3739393-G-A 3871352-G-A ***
6234137-T-A 6366096-T-A IR3_Dst ***
10048537-C-G 10210928-C-G ***
13461435-C-G 11305759-C-G ***
22307179-A-T 20145293-A-T DYZ19 ***
13469217-T-C 11313541-T-C ***
13469225-T-C 11313549-T-C ***
13459766-T-A 11304090-T-A ***
13462105-A-T 11306429-A-T ***
13530026-A-G 11374350-A-G ***
13481650-T-G 11325974-T-G ***
3567156-T-A 3699115-T-A ***
22343182-T-A 20181296-T-A DYZ19 ***
13517206-T-A 11361530-T-A ***
13481642-G-A 11325966-G-A ***
13469218-G-A 11313542-G-A ***
2824726-A-G 2956685-A-G 10×C***
3170471-G-T 3302430-G-T ***
3461669-T-A 3593628-T-A ***
6234133-T-A 6366092-T-A IR3_Dst ***
6234158-T-G 6366117-T-G IR3_Dst ***
13480892-T-A 11325216-T-A ***
9564486-G-A 9726877-G-A IR3_Prx ***
9183311-C-T 9345702-C-T ***
9354636-T-G 9517027-T-G ***
9354643-T-G 9517034-T-G ***
9487021-G-T 9649412-G-T ***
9492476-T-C 9654867-T-C ***
9564480-T-A 9726871-T-A IR3_Prx ***
9564499-T-A 9726890-T-A IR3_Prx ***
8293293-T-C 8425252-T-C ***
9564507-G-T 9726898-G-T IR3_Prx ***
9919946-A-T 10082337-A-T ***
9919953-A-G 10082344-A-G ***
9919955-T-G 10082346-T-G ***
9919957-C-A 10082348-C-A ***
9919964-G-C 10082355-G-C ***
9919967-A-C 10082358-A-C ***
8293294-C-G 8425253-C-G ***
8277891-T-C 8409850-T-C ***
6234159-G-A 6366118-G-A IR3_Dst ***
7118697-G-C 7250656-G-C ***
6234170-G-A 6366129-G-A IR3_Dst ***
6314480-A-G 6446439-A-G IR3_Dst ***
6323176-C-A 6455135-C-A IR3_Dst ***
6323213-G-A 6455172-G-A IR3_Dst ***
6410906-T-C 6542865-T-C ***
6602932-T-A 6734891-T-A ***
6723435-C-T 6855394-C-T ***
7119069-C-A 7251028-C-A ***
8065425-A-G 8197384-A-G ***
7275852-G-T 7407811-G-T ***
7383748-G-A 7515707-G-A ***
7394825-G-A 7526784-G-A ***
7394863-A-G 7526822-A-G ***
7394867-A-C 7526826-A-C ***
7394875-A-C 7526834-A-C ***
7439322-G-T 7571281-G-T ***
10052412-T-G 10214803-T-G ***
16026706-C-T 13914826-C-T Z9248 ***
9956360-C-A 10118751-C-A ***
6042007-TA-T 6173966-TA-T 18×A***
28478036-T-G 26331889-T-G ***
58843740-A-C 56747131-T-G ***
13110828-T-A 10600314-T-A ***
4275437-CA-C 4407396-CA-C 19×A***
22252956-TACGT-AGTGG 20091070-TACGT-AGTGG DYZ19 ***
13425683-A-G 11270007-A-G ***
58840628-GGCCT-TGCCA 56750239-AGGCC-TGGCA ***
22360419-G-A 20198533-G-A DYZ19 ***
13203980-TC-AT 11048304-TC-AT ***
17680077-CT-C 15568197-CT-C 17×T***
5083952-CT-C 5215911-CT-C 17×T***
10029485-G-C 10191876-G-C ***
13483226-TAC-AG 11327550-TAC-AG ***
58889848-G-C 56701023-C-G ***
10022316-C-CTAAATAAA 10184707-C-CTAAATAAA 5×TAAA***
22366768-C-T 20204882-C-T DYZ19 ***
14258396-A-T 12137690-A-T ***
10102438-C-A 10264829-C-A ***
22251587-C-T 20089701-C-T DYZ19 ***
13701149-T-G 11545473-T-G ***
58984897-A-C 56838750-A-C ***
58898602-T-G 56692269-A-C ***
19646355-C-A 17534475-C-A P5_Prx ***
19646370-T-G 17534490-T-G P5_Prx ***
22251569-T-C 20089683-T-C DYZ19 ***
22251571-G-C 20089685-G-C DYZ19 ***
6148727-C-A 6280686-C-A IR3_Dst 17×A***
22311335-T-A 20149449-T-A DYZ19 ***
13516442-A-T 11360766-A-T ***
22263796-C-T 20101910-C-T DYZ19 ***
58843734-T-C 56747137-A-G ***
58877064-A-T 56713807-T-A ***
13312196-CAC-TGT 11156520-CAC-TGT ***
13470854-TT-CC 11315178-TT-CC ***
13469234-T-G 11313558-T-G ***
13583879-G-A 11428203-G-A ***
10102448-A-T 10264839-A-T ***
13530010-G-A 11374334-G-A ***
14523372-A-G 12411573-A-G ***
10090758-G-T 10253149-G-T ***
24686428-C-CTTTTTTTG 22540281-C-CTTTTTTTG P3_b2 23×T***
22234964-CAAGG-TAAAT 20073078-CAAGG-TAAAT DYZ19 ***
58846736-AC-A 56744133-AG-A ***
10029422-A-C 10191813-A-C ***
58995123-A-T 56848976-A-T ***
13636889-C-A 11481213-C-A ***
13516071-C-A 11360395-C-A ***
4420418-C-CT 4552377-C-CT 13×T***
58995218-C-T 56849071-C-T ***
10048536-C-T 10210927-C-T Z26369 ***
6011314-T-C 6143273-T-C FGC41377 ***
16352478-C-A 14240598-C-A ***
13469222-T-G 11313546-T-G ***
9956329-C-G 10118720-C-G ***
58891312-T-A 56699559-A-T ***
58870585-TTAATTCGAG-CT 56720277-CTCGAATTAA-AG ***
58861785-C-A 56729086-G-T ***
21054379-C-CA 18892493-C-CA 18×A***
58907249-T-C 56683622-A-G ***
58874441-ATCCC-TTCCT 56716426-GGGAT-AGGAA ***
13251608-T-C 11095932-T-C ***
18141280-A-T 16029400-A-T ***
22344147-T-C 20182261-T-C DYZ19 ***
58889804-G-T 56701067-C-A ***
58889834-A-T 56701037-T-A ***
58898168-C-T 56692703-G-A ***
19071530-A-T 16959650-A-T ***
19646343-T-A 17534463-T-A P5_Prx ***
19071532-A-G 16959652-A-G ***
19071546-G-A 16959666-G-A ***
22234917-G-A 20073031-G-A DYZ19 ***
58848554-T-A 56742317-A-T ***
58847150-CAGTG-TAATA 56743717-CACTG-TATTA ***
58872322-AT-TA 56718548-AT-TA ***
58994250-GC-CG 56848103-GC-CG ***
9956357-C-T 10118748-C-T ***
9962654-A-T 10125045-A-T ***
20449402-A-T 18287516-A-T P5_Dst ***
16026666-T-G 13914786-T-G ***
15883279-A-G 13771399-A-G ***
15883292-T-C 13771412-T-C ***
15936811-A-C 13824931-A-C ***
15943218-G-T 13831338-G-T ***
16025613-C-A 13913733-C-A ***
16026621-G-A 13914741-G-A ***
16081182-T-C 13969302-T-C ***
15637374-G-A 13525494-G-A ***
16215824-C-T 14103944-C-T ***
16618081-T-C 14506201-T-C ***
16684553-G-C 14572673-G-C ***
16897667-G-A 14785787-G-A ***
16981868-C-T 14869988-C-T ***
16996825-G-T 14884945-G-T ***
17090874-A-G 14978994-A-G ***
15883235-C-T 13771355-C-T ***
15626689-T-C 13514809-T-C ***
17542043-T-C 15430163-T-C ***
15292522-A-T 13180621-A-T ***
14204662-A-G 12083956-A-G ***
15118413-A-C 13006500-A-C ***
15118421-G-T 13006508-G-T ***
15118492-C-T 13006579-C-T ***
15118498-C-T 13006585-C-T ***
15152317-A-T 13040404-G-T ***
15243652-C-A 13131738-C-A ***
15294010-G-A 13182109-G-A ***
15462766-G-A 13350886-G-A ***
15294105-C-T 13182204-C-T ***
15294107-G-T 13182206-G-T ***
15294118-T-C 13182217-T-C ***
15294119-A-C 13182218-A-C ***
15294123-A-T 13182222-A-T ***
15294132-T-A 13182231-T-A ***
15296387-C-T 13184486-C-T ***
17542026-A-T 15430146-A-T ***
17588684-A-G 15476804-A-G ***
13832636-C-T 11711930-C-T ***
20074280-A-G 17962400-A-G P5_Dst ***
19646362-A-T 17534482-A-T P5_Prx ***
19646368-T-C 17534488-T-C P5_Prx ***
19690122-A-T 17578242-A-T P5_Prx ***
19800729-C-A 17688849-C-A P5_Prx ***
20057511-A-G 17945631-A-G P5_Prx ***
20057526-C-T 17945646-C-T P5_Prx ***
20074248-C-T 17962368-C-T P5_Dst ***
20275705-G-T 18113819-G-T P5_Dst ***
19377300-G-A 17265420-G-A ***
20275711-C-A 18113825-C-A P5_Dst ***
20331782-C-A 18169896-C-A P5_Dst ***
20331789-C-A 18169903-C-A P5_Dst ***
20331794-C-A 18169908-C-A P5_Dst ***
20331799-G-A 18169913-G-A P5_Dst ***
20425854-A-G 18263968-A-G P5_Dst ***
20449401-A-T 18287515-A-T P5_Dst ***
21295821-T-TA 19133935-T-TA 10×A***
19377299-G-A 17265419-G-A ***
17614887-T-C 15503007-T-C ***
19098301-T-C 16986421-T-C ***
18296289-A-G 16184409-A-G P6_Prx ***
18398174-T-C 16286294-T-C P6_Gap 9×AC***
18480063-T-G 16368183-T-G P6_Dst ***
18542356-G-T 16430476-G-T ***
18710153-T-C 16598273-T-C ***
18798775-G-T 16686895-G-T ***
19028750-C-G 16916870-C-G ***
19377186-A-G 17265306-A-G ***
19377296-G-C 17265416-G-C ***
19377190-A-G 17265310-A-G ***
19377198-A-G 17265318-A-G ***
19377209-A-G 17265329-A-G 4×GAGG***
19377228-A-G 17265348-A-G ***
19377232-A-G 17265352-A-G ***
19377237-A-G 17265357-A-G ***
19377238-A-C 17265358-A-C ***
14166017-G-A 12045311-G-A ***
13832633-A-G 11711927-A-G ***
9998702-G-A 10161093-G-A ***
13337397-T-C 11181721-T-C ***
13223696-G-A 11068020-G-A ***
13249633-A-G 11093957-A-G ***
13251349-T-G 11095673-T-G ***
13256626-C-T 11100950-C-T ***
13256682-C-G 11101006-C-G ***
13256938-C-T 11101262-C-T ***
13346797-A-C 11191121-A-C ***
13125721-C-A 10615207-C-A ***
13346802-C-T 11191126-C-T ***
13411406-C-G 11255730-C-G ***
13425950-C-T 11270274-C-T ***
13441016-G-A 11285340-G-A ***
13441077-T-G 11285401-T-G ***
13461187-G-A 11305511-G-A ***
13461283-G-A 11305607-G-A ***
13223689-A-G 11068013-A-G ***
13125716-A-T 10615202-A-T ***
13462106-C-G 11306430-C-G ***
10065647-C-G 10228038-C-G ***
10022421-T-G 10184812-T-G ***
10029433-T-C 10191824-T-C ***
10029473-A-C 10191864-A-C ***
10058533-C-T 10220924-C-T ***
10060205-A-T 10222596-A-T ***
10065597-T-G 10227988-T-G ***
10065607-G-A 10227998-G-A ***
10083971-T-A 10246362-T-A ***
13114486-T-A 10603972-T-A ***
10083979-T-C 10246370-T-C ***
13110062-A-C 10599548-A-C ***
13110515-T-C 10600001-T-C ***
13110829-C-A 10600315-C-A ***
13110840-T-A 10600326-T-A ***
13110841-T-G 10600327-T-G ***
13110844-C-G 10600330-C-G ***
13461426-C-G 11305750-C-G ***
13463800-G-A 11308124-G-A ***
13832632-C-G 11711926-C-G ***
13561802-A-G 11406126-A-G ***
13482970-A-C 11327294-A-C ***
13485404-T-G 11329728-T-G ***
13487791-T-C 11332115-T-C ***
13506141-T-G 11350465-T-G ***
13531157-A-T 11375481-A-T ***
13531645-G-A 11375969-G-A ***
13535673-A-G 11379997-A-G ***
13595000-T-C 11439324-T-C ***
13481959-G-T 11326283-G-T ***
13699983-T-A 11544307-T-A ***
13700053-A-T 11544377-A-T A2713 ***
13700124-T-C 11544448-T-C A3814 ***
13701122-T-A 11545446-T-A ***
13701809-T-G 11546133-T-G ***
13725255-C-T 11569579-C-T ***
13741117-G-A 11585441-G-A ***
13482953-C-G 11327277-C-G ***
13481819-G-A 11326143-G-A ***
13463878-G-T 11308202-G-T ***
13470627-C-T 11314951-C-T ***
13466977-C-A 11311301-C-A ***
13467012-A-G 11311336-A-G ***
13467191-G-C 11311515-G-C ***
13467199-G-T 11311523-G-T ***
13469027-C-A 11313351-C-A ***
13469338-A-T 11313662-A-T ***
13470620-C-G 11314944-C-G ***
13470651-G-A 11314975-G-A ***
13481386-A-T 11325710-A-T ***
13470668-C-G 11314992-C-G ***
13470706-G-A 11315030-G-A ***
13470739-C-A 11315063-C-A ***
13475930-T-A 11320254-T-A ***
13476354-G-T 11320678-G-T ***
13480894-A-G 11325218-A-G ***
13481355-G-T 11325679-G-T ***
59013641-TTTTTTT-ATATATA 56867494-TTTTTTT-ATATATA ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Mutation Notes:

Kit POSITION-REF-ALT (hg19) POSITION-REF-ALT (hg38) Note
Manual25211793-C-A35C 11A
Manual26033124-T-G52 reads. 15 are G and the balance are T. This position is in the Y1 region. I think the mutation is actually in the corresponding Y2 region.
Manual27929277-A-CThere are 57 reads. 22 are A, 35 are C. This mutation is in the Y2 region. There is a similar segment in Y1. There are at least a couple paired end reads that indicate the mutation really is at this location.

Haplotype Progression

The data below reveals the progression of changes in the haplotype. The bottom row is the haplotype for this man and above him are the inferred ancestral haplotypes for various upstream blocks. These inferred haplotypes are very much a work in progress, and any suggested modifications are appreciated. I think we can use our vast collection of haplotype data to refine these haplotypes. Mutations made from each upstream block are shown in sequence. The cell color is determined by the block in which the mutation took place.

DYS393
DYS390
DYS19
DYS391
DYS385
DYS426
DYS388
DYS439
DYS389i
DYS392
DYS389ii
DYS458
DYS459
DYS455
DYS454
DYS447
DYS437
DYS448
DYS449
DYS464
DYS460
Y-GATA-H4
YCAII
DYS456
DYS607
DYS576
DYS570
CDY
DYS442
DYS438
DYS531
DYS578
DYF395S1
DYS590
DYS537
DYS641
DYS472
DYF406S1
DYS511
DYS425
DYS413
DYS557
DYS594
DYS436
DYS490
DYS534
DYS450
DYS444
DYS481
DYS520
DYS446
DYS617
DYS568
DYS487
DYS572
DYS640
DYS492
DYS565
DYS710
DYS485
DYS632
DYS495
DYS540
DYS714
DYS716
DYS717
DYS505
DYS556
DYS549
DYS589
DYS522
DYS494
DYS533
DYS636
DYS575
DYS638
DYS462
DYS452
DYS445
Y-GATA-A10
DYS463
DYS441
Y-GGAAT-1B07
DYS525
DYS712
DYS593
DYS650
DYS532
DYS715
DYS504
DYS513
DYS561
DYS552
DYS726
DYS635
DYS587
DYS643
DYS497
DYS510
DYS434
DYS461
DYS435
P312/S1161324141111-14121212131329179-1011112515192915-15-17-17111119-231615181736-38121211915-1681010810101223-231610121215812222013121113111112123315916122626191211131210912121011113012132413101020151913241712152412231810141791211
Dickinson1324141014-14121212131331189-1011112515192915-15-17-17111119-231614191737-39121211915-1681010810101221-231610121214812222013121113111112123515916132726201211131110912111011113012132413101020151814241612152412231810141791211

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: WBAFF*16000000100000008300000
Used in age calculations16000000100000008300000
Counts of SNPs149
Variant counts last updated 2017-11-05 23:05:13.

* BED data not available. Using default values.


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