Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > FGC11134 > A353 > Z16250 > A114 > CTS4466/S1136 > S1115 > A541 > S1121 > Z16251 > Z18170 > FGC29280 > ~25345629-G-A > FGC29291 > FGC29289

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFGC
8734207-A-G 8866166-A-G FGC29285 YY+
22662807-A-G 20500921-A-G FGC29292 YY+
5970899-G-A 6102858-G-A FGC29283 +
3843444-T-G 3975403-T-G FGC29282 +
3334451-C-G 3466410-C-G FGC29281 +
26314758-G-A 24168611-G-A FGC29279 P1_Y1 +
16936354-A-G 14824474-A-G FGC29287 YY+
23331839-C-T 21169953-C-T FGC29293 YY+
16999231-C-T 14887351-C-T FGC29288 Y+
6586786-C-CTTTTTT 6718745-C-CTTTTTT 22×T**
13477765-G-A 11322089-G-A **
4145802-T-C 4277761-T-C **
22962414-G-GTTT 20800528-G-GTTT 20×T**
3543788-G-C 3675747-G-C **
22437075-C-T 20275189-C-T DYZ19 **
3543491-T-A 3675450-T-A **
58868606-C-T 56722265-G-A ***
58844228-T-C 56746643-A-G ***
58844951-C-T 56745920-G-A ***
58848524-C-T 56742347-G-A ***
58855103-G-A 56735768-C-T ***
58855126-G-T 56735745-C-A ***
58855132-C-T 56735739-G-A ***
58858766-C-A 56732105-G-T ***
22502044-C-T 20340158-C-T DYZ19 ***
22481210-G-C 20319324-G-C DYZ19 ***
58869665-C-G 56721206-G-C ***
58844220-A-C 56746651-T-G ***
22421492-A-T 20259606-A-T DYZ19 ***
58879555-A-G 56711316-T-C ***
58882562-C-T 56708309-G-A ***
22366591-T-G 20204705-T-G DYZ19 ***
58882564-C-T 56708307-G-A ***
58882569-A-G 56708302-T-C ***
58882579-A-C 56708292-T-G ***
58877125-C-T 56713746-G-A ***
58833648-C-T 56757223-G-A ***
22499893-G-T 20338007-G-T DYZ19 ***
27447612-T-C 25301465-T-C P1_Y2 ***
22499888-G-A 20338002-G-A DYZ19 ***
24296319-C-A 22150172-C-A P3_t1 ***
24534664-G-T 22388517-G-T P3_t2 ***
25855554-C-G 23709407-C-G P1_Y1 ***
26253352-C-A 24107205-C-A P1_Y1 ***
26253353-T-A 24107206-T-A P1_Y1 ***
26299035-T-A 24152888-T-A P1_Y1 ***
26299036-G-A 24152889-G-A P1_Y1 ***
27327983-G-T 25181836-G-T P1_g3 ***
27447591-A-G 25301444-A-G P1_Y2 ***
27536177-G-A 25390030-G-A P1_Y2 ***
58820477-G-A 56770394-C-T ***
27575341-T-A 25429194-T-A P1_Y2 ***
27586275-G-A 25440128-G-A P1_Y2 ***
27651091-G-A 25504944-G-A P1_Y2 ***
27714668-G-A 25568521-G-A P1_Y2 ***
27862381-A-G 25716234-A-G P1_Y2 ***
28022789-A-T 25876642-A-T P1_Y2 ***
28022790-G-T 25876643-G-T P1_Y2 ***
58882583-C-A 56708288-G-T ***
22499808-G-T 20337922-G-T DYZ19 ***
28058673-A-G 25912526-A-G P1_Y2 ***
28406121-G-T 26259974-G-T P1_gr2 ***
58846705-G-C 56744166-C-G ***
58912483-C-G 56678388-G-C ***
58882596-A-G 56708275-T-C ***
25246441-CTTCTTC-TTTTTTT 23100294-CTTCTTC-TTTTTTT P2_r1 ***
19187385-A-ATTT 17075505-A-ATTT 28×T***
19469872-T-TCTCC 17357992-T-TCTCC ***
22127975-C-CTTTTTTTT 19966089-C-CTTTTTTTT 20×T***
22354954-CCGG-GTTT 20193068-CCGG-GTTT DYZ19 ***
22420585-TA-CT 20258699-TA-CT DYZ19 ***
23475257-CTTTT-C 21313371-CTTTT-C 15×T***
25855557-GT-CC 23709410-GT-CC P1_Y1 ***
18626582-C-CTTTTTT 16514702-C-CTTTTTT 25×T***
26060208-G-AAAA 23914061-G-AAAA P1_Y1 ***
26228689-C-CTTTTTTTT 24082542-C-CTTTTTTTT P1_Y1 27×T***
26253352-CT-AAAA 24107205-CT-AAAA P1_Y1 ***
26902320-A-AAAAAAAC 24756173-A-AAAAAAAC P1_r3 ***
27508705-GTT-CTC 25362558-GTT-CTC P1_Y2 ***
28529232-CAAA-C 26383085-CAAA-C 23×A***
28802741-A-ATGGAG 26656594-A-ATGGAG ***
19049500-T-TAAC 16937620-T-TAAC ***
13489034-GGCAG-TGCAC 11333358-GGCAG-TGCAC ***
58891606-A-T 56699265-T-A ***
3205858-C-CAAAAA 3337817-C-CAAAAA 15×A***
58892099-G-C 56698772-C-G ***
58905376-G-A 56685495-C-T ***
22355125-C-T 20193239-C-T DYZ19 ***
16344403-T-TCTTCTC 14232523-T-TCTTCTC ***
15928702-C-CA 13816822-C-CA 19×A***
16506766-C-CA 14394886-C-CA 19×A***
3550572-CTCA-C 3682531-CTCA-C ***
26538868-TTATA-T 24392721-TTATA-T P1_g2 16×TA***
28545016-CA-C 26398869-CA-C 22×A***
2806030-A-ATTTT 2937989-A-ATTTT 16×T***
2861534-C-CAAAA 2993493-C-CAAAA 25×A***
3832233-AACACAC-A 3964192-AACACAC-A 22×AC***
13222907-AAG-A 11067231-AAG-A ***
5191228-C-CTTTTTTT 5323187-C-CTTTTTTT 27×T***
7415647-T-TAGAC 7547606-T-TAGAC ***
7758720-CTTT-C 7890679-CTTT-C 17×T***
8160178-C-CAAAAAAA 8292137-C-CAAAAAAA 20×A***
10006408-TC-CT 10168799-TC-CT ***
13121587-CATA-TATG 10611073-CATA-TATG ***
13222625-G-GA 11066949-G-GA ***
22366563-G-T 20204677-G-T DYZ19 ***
22332653-A-C 20170767-A-C DYZ19 ***
22354956-G-T 20193070-G-T DYZ19 ***
22309083-G-C 20147197-G-C DYZ19 ***
10006373-A-G 10168764-A-G ***
10006376-C-T 10168767-C-T ***
23832827-T-C 21670941-T-C ***
58908550-G-C 56682321-C-G ***
58908551-C-A 56682320-G-T ***
22361129-AC-TG 20199243-AC-TG DYZ19 ***
58844027-T-TTCCATTCCA 56746842-A-AATGGAATGG ***
58848499-G-T 56742372-C-A ***
22291970-T-G 20130084-T-G DYZ19 ***
5453891-C-CTTTTT 5585850-C-CTTTTT 19×T***
28058679-C-T 25912532-C-T P1_Y2 ***
13129671-ATTTA-GCTCT 10619157-ATTTA-GCTCT ***
58840397-G-A 56750474-C-T ***
22309406-ACTGT-GCTGC 20147520-ACTGT-GCTGC DYZ19 ***
13356309-G-A 11200633-G-A ***
24314598-C-G 22168451-C-G P3_t1 ***
13278831-C-T 11123155-C-T ***
22354957-G-T 20193071-G-T DYZ19 ***
10037740-G-A 10200131-G-A ***
22420611-G-T 20258725-G-T DYZ19 ***
22420603-T-A 20258717-T-A DYZ19 ***
4402524-T-C 4534483-T-C ***
4820013-T-C 4951972-T-C ***
58913108-C-A 56677763-G-T ***
15171226-C-CTTTT 13059312-C-CTTTT 19×T***
6247511-A-G 6379470-A-G IR3_Dst ***
13488598-ACGA-GCGC 11332922-ACGA-GCGC ***
19656707-T-C 17544827-T-C P5_Prx ***
22365946-C-T 20204060-C-T DYZ19 ***
22354954-C-G 20193068-C-G DYZ19 ***
22355113-C-G 20193227-C-G DYZ19 ***
13483226-TAC-AG 11327550-TAC-AG ***
22236528-TAT-A 20074642-TAT-A DYZ19 ***
22344649-A-C 20182763-A-C DYZ19 ***
6430439-TTATATATA-T 6562398-TTATATATA-T 19×TA***
21148589-C-CAAAA 18986703-C-CAAAA 30×A***
20438785-A-T 18276899-A-T P5_Dst ***
19937284-G-GCCCCC 17825404-G-GCCCCC P5_Prx 13×C***
22236784-A-G 20074898-A-G DYZ19 ***
58876444-G-C 56714427-C-G ***
13126310-G-C 10615796-G-C ***
28395138-C-A 26248991-C-A P1_gr2 ***
58828954-G-C 56761917-C-G ***
58854295-C-T 56736576-G-A ***
58908571-C-A 56682300-G-T ***
58910283-G-A 56680588-C-T ***
58910273-AAT-CAG 56680596-ATT-CTG ***
13483792-TCC-CCT 11328116-TCC-CCT ***
6215762-A-T 6347721-A-T IR3_Dst ***
6329031-C-A 6460990-C-A IR3_Dst ***
22344851-C-T 20182965-C-T DYZ19 ***
22235053-G-A 20073167-G-A DYZ19 ***
20257752-C-T 18095866-C-T P5_Dst ***
20355252-G-T 18193366-G-T P5_Dst ***
20355253-G-T 18193367-G-T P5_Dst ***
20355385-C-T 18193499-C-T P5_Dst ***
20356192-G-A 18194306-G-A P5_Dst ***
20426348-T-A 18264462-T-A P5_Dst ***
20430691-T-A 18268805-T-A P5_Dst ***
20478089-T-C 18316203-T-C P5_Dst ***
20478147-C-G 18316261-C-G P5_Dst ***
22232055-A-G 20070169-A-G DYZ19 ***
22235061-C-A 20073175-C-A DYZ19 ***
19822344-T-A 17710464-T-A P5_Prx ***
22235063-C-A 20073177-C-A DYZ19 ***
22235066-T-G 20073180-T-G DYZ19 ***
22235082-T-A 20073196-T-A DYZ19 ***
22309766-C-T 20147880-C-T DYZ19 ***
22309768-C-A 20147882-C-A DYZ19 ***
22332650-G-C 20170764-G-C DYZ19 ***
22480585-TTTGAA-T 20318699-TTTGAA-T DYZ19 ***
22332682-G-T 20170796-G-T DYZ19 ***
22343068-G-C 20181182-G-C DYZ19 ***
22343848-A-C 20181962-A-C DYZ19 ***
22344838-A-T 20182952-A-T DYZ19 ***
20257751-A-T 18095865-A-T P5_Dst ***
19692079-C-T 17580199-C-T P5_Prx ***
9295653-G-C 9458044-G-C ***
13121599-T-G 10611085-T-G ***
9538629-G-A 9701020-G-A BY15516 IR3_Prx ***
9566955-C-A 9729346-C-A IR3_Prx ***
9680586-C-T 9842977-C-T IR3_Prx ***
9782897-A-T 9945288-A-T ***
10006353-G-A 10168744-G-A ***
10006399-G-A 10168790-G-A ***
10091111-G-A 10253502-G-A ***
10101596-C-A 10263987-C-A ***
13104565-A-G 10594051-A-G ***
13120488-A-T 10609974-A-T ***
13120500-G-T 10609986-G-T ***
13121616-G-A 10611102-G-A ***
18361276-C-A 16249396-C-A P6_Prx ***
13121624-A-T 10611110-A-T ***
13344229-C-T 11188553-C-T ***
13725144-A-T 11569468-A-T ***
13725158-C-A 11569482-C-A ***
13728259-G-T 11572583-G-T ***
15158636-T-A 13046722-T-A ***
15244899-C-T 13132985-C-T ***
15294119-A-G 13182218-A-G ***
16151892-T-A 14040012-T-A P8_Dst ***
17323631-A-G 15211751-A-G ***
17999195-C-A 15887315-C-A P7_Gap ***
58882552-CCG-ACA 56708317-CGG-TGT ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

Kit: KWNJH*16000000100000008300000
Used in age calculations16000000100000008300000
Counts of SNPs54
Variant counts last updated 2017-11-13 20:49:17.

* BED data not available. Using default values.

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