Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > FGC11134 > A353 > Z16250 > A114 > CTS4466/S1136 > S1115 > A541 > S1121 > Z16251 > A1134 > 23642701-T-TA > A804 > FGC29067 > FGC29071

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFGC
7277873-C-G 7409832-C-G FGC29066 YY+
21104489-C-T 18942603-C-T FGC29075 YY+
5790487-C-G 5922446-C-G FGC29064 +
4854202-T-G 4986161-T-G FGC29062 +
4816041-G-C 4948000-G-C FGC29061 +
4624824-G-T 4756783-G-T FGC29060 +
3509040-T-C 3640999-T-C FGC29059 +
3111113-C-T 3243072-C-T FGC29058 +
7002711-TG-T 7134670-TG-T +
28526245-C-T 26380098-C-T FGC29078 +
9393874-GA-G 9556265-GA-G +
13923796-G-A 11803090-G-A FGC29068 Y+
15855340-C-T 13743460-C-T FGC29070 Y+
22913194-C-T 20751308-C-T FGC29077 YY+
15788703-G-T 13676823-G-T FGC29069 Y+
18366371-T-C 16254491-T-C FGC29057 P6_Prx *
17997686-G-A 15885806-G-A FGC29072 P7_Gap Y*
17857519-C-T 15745639-C-T CTS8162 Y*
4879904-C-T 5011863-C-T FGC29063 *
5786608-C-CAAAA 5918567-C-CAAAA 20×A**
13539360-T-C 11383684-T-C **
23206949-G-T 21045063-G-T BY2882 A9005 **
23206956-A-T 21045070-A-T Y18975 **
24387557-A-G 22241410-A-G **
18290815-CAAAAAAA-C 16178935-CAAAAAAA-C P6_Prx 20×A**
22503559-T-C 20341673-T-C DYZ19 ***
22342531-A-C 20180645-A-C DYZ19 ***
58842839-T-C 56748032-A-G ***
22342569-G-A 20180683-G-A DYZ19 ***
58842303-A-C 56748568-T-G ***
58842266-A-T 56748605-T-A ***
58842854-C-G 56748017-G-C ***
58820451-A-C 56770420-T-G ***
22342629-T-G 20180743-T-G DYZ19 ***
28416105-G-A 26269958-G-A P1_gr2 ***
22342530-C-A 20180644-C-A DYZ19 ***
22337194-T-A 20175308-T-A DYZ19 ***
58842905-C-T 56747966-G-A ***
22342527-C-A 20180641-C-A DYZ19 ***
58844888-A-T 56745983-T-A ***
22332475-A-C 20170589-A-C DYZ19 ***
58847806-C-A 56743065-G-T ***
22332465-A-G 20170579-A-G DYZ19 ***
58859202-C-A 56731669-G-T ***
58867456-G-A 56723415-C-T ***
58872945-C-A 56717926-G-T ***
58873020-A-C 56717851-T-G ***
58873021-T-C 56717850-A-G ***
58890126-A-C 56700745-T-G ***
58890431-T-C 56700440-A-G ***
58890437-C-A 56700434-G-T ***
28404469-T-C 26258322-T-C P1_gr2 ***
22344078-C-A 20182192-C-A DYZ19 ***
27952058-A-C 25805911-A-C P1_Y2 ***
25747132-G-A 23600985-G-A P1_b3 ***
22504458-C-G 20342572-C-G DYZ19 ***
22532019-G-A 20370133-G-A ***
22491219-C-G 20329333-C-G FGC27684 DYZ19 ***
22433309-C-A 20271423-C-A DYZ19 ***
24387585-A-G 22241438-A-G ***
24862281-C-A 22716134-C-A P3_b2 ***
24895675-A-C 22749528-A-C g1 ***
24926073-C-T 22779926-C-T g1 ***
24926114-A-G 22779967-A-G g1 ***
25542204-G-T 23396057-G-T P1_gr1 ***
25542209-T-G 23396062-T-G P1_gr1 ***
25542210-G-T 23396063-G-T P1_gr1 11×CT***
25542299-A-T 23396152-A-T P1_gr1 ***
25747133-T-G 23600986-T-G P1_b3 ***
27835969-T-A 25689822-T-A P1_Y2 ***
26070770-G-A 23924623-G-A P1_Y1 ***
26140900-A-T 23994753-A-T P1_Y1 ***
26499685-C-T 24353538-C-T P1_Y1 ***
26499746-T-C 24353599-T-C P1_Y1 ***
22344116-T-C 20182230-T-C DYZ19 ***
58904147-G-C 56686724-C-G ***
26699376-G-T 24553229-G-T P1_g2 ***
27405180-T-C 25259033-T-C P1_g3 ***
27405186-C-T 25259039-C-T P1_g3 ***
22344100-T-C 20182214-T-C DYZ19 ***
27575441-A-T 25429294-A-T P1_Y2 ***
27575488-G-A 25429341-G-A P1_Y2 ***
27575490-T-C 25429343-T-C P1_Y2 ***
22504419-A-C 20342533-A-C DYZ19 ***
58892133-T-C 56698738-A-G ***
9930334-CGGCT-TGGCG 10092725-CGGCT-TGGCG ***
58904156-T-C 56686715-A-G ***
19858655-GG-AA 17746775-GG-AA P5_Prx ***
22342028-CTTCAAGA-TTTC 20180142-CTTCAAGA-TTTC DYZ19 ***
22236408-ATAC-GGAA 20074522-ATAC-GGAA DYZ19 ***
21409460-C-CAAAAAAA 19247574-C-CAAAAAAA 30×A***
20420960-TAA-T 18259074-TAA-T P5_Dst 17×A***
20118103-AG-TT 18006223-AG-TT P5_Dst ***
19646343-TTG-ATA 17534463-TTG-ATA P5_Prx ***
22342582-TA-AT 20180696-TA-AT DYZ19 ***
18511195-CAA-C 16399315-CAA-C P6_Dst 30×A***
17054915-GTATA-G 14943035-GTATA-G 10×TA***
15171226-C-CTTTTTTT 13059312-C-CTTTTTTT 19×T***
13842636-TGGAAAGGAAC-T 11721930-TGGAAAGGAAC-T ***
13842626-TGGACC-T 11721920-TGGACC-T ***
13488946-AG-CA 11333270-AG-CA ***
22342557-ATTTAG-CCTTAC 20180671-ATTTAG-CCTTAC DYZ19 ***
22352651-T-TG 20190765-T-TG DYZ19 ***
13482982-CCT-TAC 11327306-CCT-TAC ***
27834002-TA-T 25687855-TA-T P1_Y2 ***
58872948-TC-T 56717919-TG-T ***
58842318-GCC-CCA 56748551-GGC-TGG ***
58823346-CCATT-C 56767516-CAATG-C ***
27897272-G-GGGCTC 25751125-G-GGGCTC P1_Y2 ***
27834008-AAG-GAC 25687861-AAG-GAC P1_Y2 ***
27833994-TGTTC-ATTCTA 25687847-TGTTC-ATTCTA P1_Y2 ***
22480584-G-GT 20318698-G-GT DYZ19 ***
27462468-CAA-C 25316321-CAA-C P1_Y2 19×A***
26310632-C-CT 24164485-C-CT P1_Y1 28×T***
25705290-ACTCT-TCTCG 23559143-ACTCT-TCTCG P1_b3 18×CT***
25542209-TG-GT 23396062-TG-GT P1_gr1 ***
25080053-C-CAAAA 22933906-C-CAAAA g1 20×A***
24235387-G-GTTTTTT 22089240-G-GTTTTTT P3_b1 29×T***
22504501-GGCA-TGCG 20342615-GGCA-TGCG DYZ19 ***
13483502-C-CA 11327826-C-CA ***
13478348-AGG-TGC 11322672-AGG-TGC ***
58907125-A-C 56683746-T-G ***
28628505-TA-T 26482358-TA-T ***
5388261-TAAAAAA-T 5520220-TAAAAAA-T 18×A***
4880892-ATTTTT-A 5012851-ATTTTT-A 17×T***
3522968-T-TTA 3654927-T-TTA 24×A***
27808469-C-TT 25662322-C-TT P1_Y2 ***
13611405-C-CA 11455729-C-CA 16×A***
17926560-G-AAA 15814680-G-AAA ***
25524693-C-CTTT 23378546-C-CTTT P1_gr1 33×T***
6250219-CT-GC 6382178-CT-GC IR3_Dst ***
22274188-G-T 20112302-G-T DYZ19 ***
58913109-C-T 56677762-G-A ***
58909250-G-A 56681621-C-T ***
58908576-A-G 56682295-T-C ***
58908546-T-G 56682325-A-C ***
58907132-T-C 56683739-A-G ***
6192615-AACATT-CACAGC 6324574-AACATT-CACAGC IR3_Dst ***
7223194-CAAAAAAAA-C 7355153-CAAAAAAAA-C 22×A***
13470159-GG-CT 11314483-GG-CT ***
13468995-TTGTA-CTGTT 11313319-TTGTA-CTGTT ***
10091160-GTCG-CTCA 10253551-GTCG-CTCA ***
10090723-TCAC-CCAT 10253114-TCAC-CCAT ***
10090702-GACC-G 10253093-GACC-G ***
10090673-ATG-GTT 10253064-ATG-GTT ***
10015112-CTCCT-TTCCC 10177503-CTCCT-TTCCC ***
7451290-CTTTC-TTTTT 7583249-CTTTC-TTTTT IR1_L ***
9735605-G-GTTTTTTTT 9897996-G-GTTTTTTTT IR3_Prx 30×T***
9221696-TAT-AGA 9384087-TAT-AGA ***
8888375-C-CTTTT 9020334-C-CTTTT 25×T***
8826677-TC-AA 8958636-TC-AA ***
7451294-C-CTTTTT 7583253-C-CTTTTT IR1_L 29×T***
22293085-A-C 20131199-A-C DYZ19 ***
22235070-G-C 20073184-G-C DYZ19 ***
22267330-A-G 20105444-A-G DYZ19 ***
58844858-C-T 56746013-G-A ***
7573173-G-A 7705132-G-A ***
7573180-G-A 7705139-G-A ZS7884 ***
22364782-C-A 20202896-C-A DYZ19 ***
23831252-C-CTTT 21669366-C-CTTT 26×T***
22421067-CT-GTG 20259181-CT-GTG DYZ19 ***
22231957-G-C 20070071-G-C DYZ19 ***
7573186-G-A 7705145-G-A ***
19646334-T-C 17534454-T-C P5_Prx ***
13486254-G-C 11330578-G-C ***
13469218-G-A 11313542-G-A ***
13469216-T-A 11313540-T-A ***
13469217-T-C 11313541-T-C ***
13469222-T-G 11313546-T-G ***
13472071-A-C 11316395-A-C ***
13460180-T-G 11304504-T-G ***
22252895-CCTTA-TCTTC 20091009-CCTTA-TCTTC DYZ19 ***
3889321-T-C 4021280-T-C ***
6328549-C-A 6460508-C-A IR3_Dst ***
6328464-G-A 6460423-G-A IR3_Dst ***
6250207-T-G 6382166-T-G IR3_Dst ***
4881129-C-T 5013088-C-T ***
4778012-C-A 4909971-C-A 16×A***
4150841-C-T 4282800-C-T ***
24387529-A-G 22241382-A-G ***
3313559-C-A 3445518-C-A ***
22354740-T-C 20192854-T-C DYZ19 ***
9930818-C-T 10093209-C-T ***
22267324-A-G 20105438-A-G DYZ19 ***
5949039-G-T 6080998-G-T ***
4511122-T-C 4643081-T-C ***
13256596-C-G 11100920-C-G ***
13469249-C-A 11313573-C-A ***
22433304-T-C 20271418-T-C DYZ19 ***
7985535-C-T 8117494-C-T ***
9930349-C-G 10092740-C-G ***
4200055-CA-C 4332014-CA-C 23×A***
58844956-G-C 56745915-C-G ***
22504450-T-C 20342564-T-C DYZ19 ***
22341723-TTCT-GTCC 20179837-TTCT-GTCC DYZ19 ***
6147446-AT-A 6279405-AT-A IR3_Dst 19×T***
9930372-C-T 10092763-C-T ***
22504440-TACTT-CACTC 20342554-TACTT-CACTC DYZ19 ***
58893246-G-A 56697625-C-T ***
10090738-A-G 10253129-A-G ***
22341656-GA-AG 20179770-GA-AG DYZ19 ***
22361131-A-C 20199245-A-C DYZ19 ***
22352648-A-T 20190762-A-T DYZ19 ***
10090658-T-C 10253049-T-C ***
8575956-A-ATTTTTT 8707915-A-ATTTTTT 28×T***
24643282-CA-C 22497135-CA-C P3_t2 28×A***
9403521-G-GTTTTTT 9565912-G-GTTTTTT 21×T***
58848553-GT-TC 56742317-AC-GA ***
22342624-A-T 20180738-A-T DYZ19 ***
13120287-A-T 10609773-A-T ***
58843715-A-C 56747156-T-G ***
22365765-ACA-CCT 20203879-ACA-CCT DYZ19 ***
58908501-C-A 56682370-G-T ***
58828971-C-T 56761900-G-A ***
58842288-ACAG-CCAT 56748580-CTGT-ATGG ***
13444645-C-T 11288969-C-T ***
58848568-G-T 56742303-C-A ***
58847794-A-C 56743077-T-G ***
58842270-C-A 56748601-G-T ***
24539539-A-G 22393392-A-G P3_t2 ***
22422027-C-A 20260141-C-A DYZ19 ***
13720106-G-T 11564430-G-T ***
7636027-T-A 7767986-T-A ***
9310507-T-C 9472898-T-C ***
22267322-T-G 20105436-T-G DYZ19 ***
20118236-A-T 18006356-A-T P5_Dst ***
20943490-T-G 18781604-T-G P4_Dst ***
20943486-T-G 18781600-T-G P4_Dst ***
20580028-A-T 18418142-A-T P5_Dst ***
20465042-G-A 18303156-G-A P5_Dst ***
20262458-C-T 18100572-C-T P5_Dst ***
20262448-G-A 18100562-G-A P5_Dst ***
20118234-C-T 18006354-C-T P5_Dst ***
22224319-C-T 20062433-C-T DYZ19 ***
20118230-A-G 18006350-A-G P5_Dst ***
20118218-C-T 18006338-C-T P5_Dst ***
19917581-C-T 17805701-C-T P5_Prx ***
19917573-A-T 17805693-A-T P5_Prx ***
19917565-G-T 17805685-G-T P5_Prx ***
19858656-G-A 17746776-G-A P5_Prx ***
20979293-A-G 18817407-A-G P4_Dst ***
22224320-A-G 20062434-A-G DYZ19 ***
19643788-T-C 17531908-T-C P5_Prx ***
22367094-ATGG-CTGA 20205208-ATGG-CTGA DYZ19 ***
22267319-C-A 20105433-C-A DYZ19 ***
22267311-A-T 20105425-A-T DYZ19 ***
22267310-C-T 20105424-C-T DYZ19 ***
22248691-G-T 20086805-G-T DYZ19 ***
22248681-T-C 20086795-T-C DYZ19 ***
22241295-C-A 20079409-C-A DYZ19 ***
22234338-G-C 20072452-G-C DYZ19 ***
22224322-T-G 20062436-T-G DYZ19 ***
22227051-G-A 20065165-G-A DYZ19 ***
22226621-G-A 20064735-G-A DYZ19 ***
22226620-T-C 20064734-T-C DYZ19 ***
22226607-A-G 20064721-A-G DYZ19 ***
22226603-G-C 20064717-G-C DYZ19 ***
22224324-A-G 20062438-A-G DYZ19 ***
19858655-G-A 17746775-G-A P5_Prx ***
18446775-A-G 16334895-A-G P6_Dst ***
9697730-C-A 9860121-C-A IR3_Prx ***
10090726-C-T 10253117-C-T ***
13108774-T-A 10598260-T-A ***
13108447-G-C 10597933-G-C ***
13108439-C-G 10597925-C-G ***
13108433-A-T 10597919-A-T ***
10091168-T-G 10253559-T-G ***
10091156-C-G 10253547-C-G ***
10090681-A-G 10253072-A-G ***
13120299-G-A 10609785-G-A ***
10090673-A-G 10253064-A-G ***
9930843-C-G 10093234-C-G ***
9930830-G-C 10093221-G-C ***
9930823-C-T 10093214-C-T ***
9783995-G-A 9946386-G-A ***
9782877-C-T 9945268-C-T ***
13109460-A-T 10598946-A-T ***
13255722-A-G 11100046-A-G ***
18010541-G-A 15898661-G-A P7_Dst ***
13553672-G-A 11397996-G-A 12×A***
15641047-C-T 13529167-C-T ***
15350325-G-T 13238444-G-T ***
14609709-C-T 12497911-C-T ***
13728363-C-T 11572687-C-T ***
13726484-G-T 11570808-G-T ***
13723590-A-T 11567914-A-T 4×GGAAT***
13488966-G-T 11333290-G-T ***
13357224-C-T 11201548-C-T ***
13478336-C-A 11322660-C-A ***
13472119-G-A 11316443-G-A ***
13467497-C-T 11311821-C-T ***
13385005-T-A 11229329-T-A ***
13374496-A-G 11218820-A-G ***
13372279-G-A 11216603-G-A ***
58914499-AC-GT 56676371-GT-AC ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

Kit: B6564*16000000100000008300000
Used in age calculations16000000100000008300000
Counts of SNPs83
Variant counts last updated 2017-12-16 19:26:29.

* BED data not available. Using default values.

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