Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > DF21/S192 > FGC3213 > ZZ1 > S3058 > S424 > LSC > LSC1 > LSC1a > ZZ23 > Y12464 > ZZ25 > Z17998 > Z17999 > Z18000 > Z36749 > Z36748 > Y31390

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
385777
BigY2
385777
Manual
Edits
13687234-A-C 11531558-A-C A*
2832449-G-C 2964408-G-C YY++
21759687-A-AT 19597801-A-AT 9×T++
17041552-G-T 14929672-G-T YY++
13194547-ATCCAC-A 11038871-ATCCAC-A 4×TCCAC+
7305861-G-T 7437820-G-T YY++
14934517-C-A 12822582-C-A **
14982038-C-A 12870106-C-A **
15012807-G-T 12900895-G-T **
15012812-T-G 12900900-T-G **
15044309-C-A 12932399-C-A **
56858680-G-T **
15074633-C-A 12962723-C-A **
15104893-A-G 12992981-A-G **
15132045-C-G 13020132-C-G **
15168846-C-T 13056932-C-T **
15178548-C-A 13066634-C-A **
15180209-A-T 13068295-A-T **
24459993-G-C 22313846-G-C **
15092338-C-A 12980427-C-A **
14894095-C-A 12782161-C-A **
14909352-G-T 12797419-G-T **
14512994-C-A 12401199-C-A **
14354449-GT-G 12233744-GT-G **
14358410-G-A 12237705-G-A 14×A**
14447388-A-G 12326661-A-G **
14453709-GAAA-G 12332982-GAAA-G 18×A**
14462773-T-A 12342046-T-A **
14495831-GGTGT-G 12384028-GGTGT-G 17×GT**
14508726-C-A 12396931-C-A **
14538771-C-A 12426972-C-A **
13203564-CTCAAAAAAAAAAAAAAAAAAATTATGTATACGCATATAGTGCAT-C **
14575813-C-T 12464013-C-T **
14593746-C-A 12481946-C-A **
24634204-G-T 22488057-G-T P3_t2 **
14802716-C-A 12690787-C-A **
14821752-C-A 12709819-C-A **
14825876-A-G 12713943-A-G **
14828624-C-A 12716691-C-A **
24523480-G-T 22377333-G-T **
15260089-C-A 13148173-C-A **
15401849-C-A 13289969-C-A **
15360740-C-A 13248860-C-A **
16146489-A-AAGAG 14034609-A-AAGAG P8_Dst **
16004115-G-T 13892235-G-T **
16006088-C-A 13894208-C-A **
24405455-C-A 22259308-C-A **
16054732-C-A 13942852-C-A **
16057204-C-A 13945324-C-A **
16070818-C-A 13958938-C-A **
16220659-A-T 14108779-A-T **
24422070-C-A 22275923-C-A **
16312347-C-A 14200467-C-A **
16351679-C-A 14239799-C-A **
16357364-G-GTGTGTA 14245484-G-GTGTGTA **
16409068-G-T 14297188-G-T **
16480035-A-C 14368155-A-C **
16486703-C-A 14374823-C-A **
15931592-C-A 13819712-C-A **
15916474-C-A 13804594-C-A **
15368668-C-A 13256788-C-A **
15735389-C-A 13623509-C-A **
14286102-C-A 12165396-C-A **
15500499-C-A 13388619-C-A **
15579477-C-T 13467597-C-T **
15579478-A-G 13467598-A-G **
15579494-C-G 13467614-C-G **
15733878-TC-T 13621998-TC-T **
15746337-C-A 13634457-C-A **
15894589-A-T 13782709-A-T **
24424257-G-A 22278110-G-A **
15779992-G-A 13668112-G-A **
15824118-CTCTGTCTCCAAAAATATAATAATAATTATAATAAA-C 13712238-CTCTGTCTCCAAAAATATAATAATAATTATAATAAA-C **
15824155-GATAATAATGTTTTTGTATACTAACAAT-G 13712275-GATAATAATGTTTTTGTATACTAACAAT-G **
15848963-TA-T 13737083-TA-T **
15860233-T-TAA 13748353-T-TAA 12×A**
15864078-C-A 13752198-C-A **
14315607-TCTTGAACTC-T 12194901-TCTTGAACTC-T **
24931840-G-A 22785693-G-A g1 **
14241204-C-A 12120498-C-A **
13257976-C-A 11102300-C-A **
11038116-A-T **
11038134-C-CT **
13194220-C-A 11038544-C-A **
13196362-C-A 11040686-C-A **
13196650-C-A 11040974-C-A **
13198758-C-A 11043082-C-A **
13268891-C-CTT 11113215-C-CTT 11×T**
25937806-C-A 23791659-C-A P1_Y1 **
13275200-G-A 11119524-G-A **
13277318-C-A 11121642-C-A **
13302538-C-A 11146862-C-A **
13350997-C-A 11195321-C-A **
13410451-G-C 11254775-G-C **
13463960-C-A 11308284-C-A **
11037575-A-G **
25990620-TTG-T 23844473-TTG-T P1_Y1 **
25871027-A-G 23724880-A-G P1_Y1 **
10988582-CTCT-C **
10959294-C-T **
10959331-C-T **
10973443-G-T **
10973500-A-G **
10983782-G-C **
26010268-G-GTATATATATATATATA 23864121-G-GTATATATATATATATA P1_Y1 21×TA**
10988759-C-A **
11018979-A-T **
10992684-C-A **
11001844-CTG-C **
11009816-T-G **
11018647-A-C **
11018963-A-T **
11018968-A-T **
58972517-G-T 56826370-G-T **
13483271-G-C 11327595-G-C **
14218436-C-A 12097730-C-A **
14073462-C-A 11952756-C-A **
14002138-C-A 11881432-C-A **
14008778-GAAAAA-G 11888072-GAAAAA-G 25×A**
14015466-G-T 11894760-G-T **
14015615-G-T 11894909-G-T **
14023013-C-A 11902307-C-A **
14036081-C-A 11915375-C-A **
14076063-G-T 11955357-G-T **
13973248-C-A 11852542-C-A **
14149237-C-A 12028531-C-A **
14152994-C-A 12032288-C-A **
25333911-G-A 23187764-G-A P2_r1 **
14177891-G-A 12057185-G-A **
16532677-G-A 14420797-G-A **
14195789-C-A 12075083-C-A **
14000532-C-A 11879826-C-A **
13960849-C-A 11840143-C-A **
13489003-C-A 11333327-C-A **
25592877-TC-T 23446730-TC-T P1_gr1 **
13489004-G-C 11333328-G-C **
13568558-C-A 11412882-C-A **
13587708-T-A 11432032-T-A **
13588281-C-A 11432605-C-A **
13593593-C-A 11437917-C-A **
13598833-C-A 11443157-C-A **
11666502-G-A **
13945896-T-A 11825190-T-A **
11666507-A-G **
11666510-T-A **
13858009-C-A 11737303-C-A **
13858011-G-T 11737305-G-T **
13858012-A-T 11737306-A-T **
13936205-GAAGAAAGAAAGA-G 11815499-GAAGAAAGAAAGA-G 14×AAGA**
13941579-T-A 11820873-T-A **
16503796-G-A 14391916-G-A **
16658946-C-A 14547066-C-A **
24371798-G-T 22225651-G-T **
21281748-G-A 19119862-G-A **
21112126-C-A 18950240-C-A **
21134831-C-A 18972945-C-A **
21148577-C-A 18986691-C-A **
21182452-G-A 19020566-G-A **
21200701-C-A 19038815-C-A **
21253906-C-A 19092020-C-A **
21308242-C-A 19146356-C-A **
21028772-A-AAGACAG 18866886-A-AAGACAG P4_Dst **
21340179-C-A 19178293-C-A **
21373615-C-A 19211729-C-A **
21412261-C-T 19250375-C-T 36×T**
21522091-C-A 19360205-C-A **
21651820-C-A 19489934-C-A **
21681796-C-A 19519910-C-A **
21107546-G-T 18945660-G-T **
20832417-C-A 18670531-C-A P4_Gap **
21771516-C-A 19609630-C-A **
19597206-TTA-T 17485326-TTA-T P5_Prx **
19407627-A-C 17295747-A-C **
19415306-C-A 17303426-C-A **
19418523-TTA-T 17306643-TTA-T **
23773549-A-C 21611663-A-C **
19506855-C-A 17394975-C-A **
19597201-AT-A 17485321-AT-A P5_Prx **
19678527-G-T 17566647-G-T P5_Prx **
20779664-G-GTGTC 18617778-G-GTGTC P4_Prx **
19678536-G-T 17566656-G-T P5_Prx **
19829521-C-G 17717641-C-G P5_Prx **
20116699-C-CT 18004819-C-CT P5_Dst **
20442919-T-TGCCTACTAGCAGACAGGA 18281033-T-TGCCTACTAGCAGACAGGA P5_Dst **
20640178-G-T 18478292-G-T P4_Prx **
23773542-G-C 21611656-G-C **
21713437-C-A 19551551-C-A **
21771708-C-A 19609822-C-A **
19337654-TTG-T 17225774-TTG-T **
22833887-T-A 20672001-T-A **
22730377-C-A 20568491-C-A **
22755997-C-A 20594111-C-A **
22793132-C-A 20631246-C-A **
22809826-C-A 20647940-C-A **
22833817-C-G 20671931-C-G **
22833853-A-G 20671967-A-G **
22869016-C-A 20707130-C-A **
22611344-C-A 20449458-C-A **
22994715-A-G 20832829-A-G **
23035858-A-C 20873972-A-C **
23062736-C-A 20900850-C-A **
23128091-T-A 20966205-T-A **
23393456-T-G 21231570-T-G **
23255327-C-A 21093441-C-A **
22662514-T-A 20500628-T-A **
22587860-A-C 20425974-A-C **
21807065-C-A 19645179-C-A **
23426935-C-A 21265049-C-A **
21834267-C-A 19672381-C-A **
21885770-A-T 19723884-A-T **
21888372-A-G 19726486-A-G **
21935069-C-A 19773183-C-A **
21939719-T-C 19777833-T-C **
21960520-C-A 19798634-C-A **
22103663-TA-T 19941777-TA-T **
23425533-C-A 21263647-C-A **
22134132-G-T 19972246-G-T **
22167296-A-C 20005410-A-C **
22173690-C-A 20011804-C-A **
22192994-C-A 20031108-C-A **
22202044-C-A 20040158-C-A **
22537697-A-T 20375811-A-T **
22542063-G-T 20380177-G-T **
23773554-A-G 21611668-A-G **
19331780-G-A 17219900-G-A **
16648161-C-A 14536281-C-A **
17440961-C-A 15329081-C-A **
17211620-C-A 15099740-C-A **
17217398-C-A 15105518-C-A **
17314654-C-A 15202774-C-A **
24069744-A-G 21923597-A-G P3_b1 **
17382638-C-A 15270758-C-A **
17434086-T-C 15322206-T-C **
17462106-C-A 15350226-C-A **
17136896-A-C 15025016-A-C **
17480166-T-C 15368286-T-C **
23991920-G-A 21845773-G-A **
17519741-C-A 15407861-C-A **
17544702-C-A 15432822-C-A **
17629673-T-C 15517793-T-C **
17717035-C-A 15605155-C-A **
17170237-C-A 15058357-C-A **
17128573-C-A 15016693-C-A **
17728707-G-T 15616827-G-T **
16783310-C-A 14671430-C-A **
10951319-A-T **
16681638-C-A 14569758-C-A **
16703759-G-T 14591879-G-T **
16704975-A-G 14593095-A-G **
16757078-A-G 14645198-A-G **
16765554-C-A 14653674-C-A **
16783657-T-G 14671777-T-G **
17071382-A-G 14959502-A-G **
16783674-C-A 14671794-C-A **
16783687-T-C 14671807-T-C **
16783693-T-G 14671813-T-G **
16881855-C-A 14769975-C-A **
16888227-C-A 14776347-C-A **
16926055-C-A 14814175-C-A **
24342937-T-TCAG 22196790-T-TCAG P3_t1 **
17722811-G-T 15610931-G-T **
17781567-T-TATTTA 15669687-T-TATTTA **
19331777-T-C 17219897-T-C **
19022401-C-A 16910521-C-A **
18825581-G-A 16713701-G-A **
18890880-T-G 16779000-T-G **
23773567-TT-A 21611681-TT-A **
18913366-A-T 16801486-A-T **
19000641-G-C 16888761-G-C **
19007708-C-A 16895828-C-A **
19106907-A-T 16995027-A-T **
18768319-C-A 16656439-C-A **
19117308-C-A 17005428-C-A **
19135129-G-A 17023249-G-A **
19204204-C-A 17092324-C-A Y103996 **
19254456-T-A 17142576-T-A **
23773554-AT-A 21611668-AT-A **
19310217-C-A 17198337-C-A **
18795007-C-A 16683127-C-A **
18740840-T-A 16628960-T-A **
17849084-T-TGACAG 15737204-T-TGACAG **
23810721-C-A 21648835-C-A **
17857315-G-T 15745435-G-T **
23848484-G-T 21686598-G-T **
17860085-G-T 15748205-G-T **
17864785-C-A 15752905-C-A **
17874259-C-A 15762379-C-A **
17897922-C-A 15786042-C-A **
17950763-C-A 15838883-C-A **
23773575-A-G 21611689-A-G **
18017111-ATATATATATATATATATATATAT-A 15905231-ATATATATATATATATATATATAT-A **
18019229-C-A 15907349-C-A **
18218881-C-A 16107001-C-A **
18336350-G-A 16224470-G-A P6_Prx **
18633598-G-A 16521718-G-A **
18688145-C-A 16576265-C-A **
18710450-C-T 16598570-C-T **
10959285-A-T **
10946063-G-T **
10947277-G-T **
5576831-C-A 5708790-C-A **
5039853-C-A 5171812-C-A **
5126140-C-A 5258099-C-A **
5199653-T-C 5331612-T-C **
28767147-C-A 26621000-C-A **
5332187-C-A 5464146-C-A **
5332281-AT-A 5464240-AT-A **
5598489-C-A 5730448-C-A **
4970055-G-T 5102014-G-T **
5613597-G-A 5745556-G-A **
28719854-CT-C 26573707-CT-C 10×T**
5829871-C-A 5961830-C-A **
5864523-A-C 5996482-A-C **
5910733-T-C 6042692-T-C **
5921426-G-A 6053385-G-A **
5035607-C-A 5167566-C-A **
28780016-C-A 26633869-C-A **
28719845-C-A 26573698-C-A **
4321351-G-T 4453310-G-T **
3889877-C-A 4021836-C-A **
4139010-G-T 4270969-G-T **
4213214-C-A 4345173-C-A **
4241779-C-A 4373738-C-A **
4244619-G-A 4376578-G-A **
4302913-C-A 4434872-C-A **
4394312-G-T 4526271-G-T **
4919515-C-A 5051474-C-A **
4437984-G-A 4569943-G-A **
4442973-G-A 4574932-G-A **
4586017-C-A 4717976-C-A **
4644050-C-A 4776009-C-A **
4833793-C-A 4965752-C-A **
4901632-T-G 5033591-T-G **
5924297-C-A 6056256-C-A **
28708286-C-A 26562139-C-A **
3804774-G-A 3936733-G-A **
7017054-A-G 7149013-A-G **
6977525-C-A 7109484-C-A **
6997988-C-A 7129947-C-A **
6998032-C-A 7129991-C-A **
7001759-C-A 7133718-C-A **
7011584-C-A 7143543-C-A **
7015137-C-A 7147096-C-A **
7063894-C-A 7195853-C-A **
6930891-G-A 7062850-G-A Y82909 **
7084343-T-C 7216302-T-C **
7084344-A-T 7216303-A-T **
7084361-G-T 7216320-G-T **
7108710-C-A 7240669-C-A **
23259308-G-GA 21097422-G-GA **
7196450-C-T 7328409-C-T **
6944868-C-A 7076827-C-A **
6930824-C-A 7062783-C-A **
6241230-T-TCTGTCTC 6373189-T-TCTGTCTC IR3_Dst **
6490743-C-A 6622702-C-A **
6352521-G-T 6484480-G-T **
6352531-G-T 6484490-G-T **
28672996-C-A 26526849-C-A **
6384577-T-G 6516536-T-G **
6419459-C-CTA 6551418-C-CTA **
6429581-C-A 6561540-C-A **
6519552-G-T 6651511-G-T **
6830802-C-A 6962761-C-A **
6523535-T-C 6655494-T-C **
28635926-C-A 26489779-C-A **
6633054-C-A 6765013-C-A **
6663331-A-C 6795290-A-C **
6674625-C-A 6806584-C-A **
6732495-G-T 6864454-G-T **
3868107-G-T 4000066-G-T **
3804715-A-G 3936674-A-G **
7200560-G-A 7332519-G-A **
58972137-G-C 56825990-G-C **
14550825-C-A 12439026-C-A **
56831501-T-A **
56831494-C-T **
22954667-C-A 20792781-C-A ****
56825997-T-A **
8296873-C-G 8428832-C-G Z4185 **
4561563-C-A 4693522-C-A **
7084354-T-C 7216313-T-C K517 ****
24910853-C-CATATAT 22764706-C-CATATAT g1 26×AT**
56823194-G-T **
18812163-C-A 16700283-C-A **
13487816-G-A 11332140-G-A **
13487826-C-A 11332150-C-A **
3889019-CT-C 4020978-CT-C 15×T**
9960046-G-A 10122437-G-A PF2907 **
3436405-G-T 3568364-G-T ****
2879166-G-A 3011125-G-A b38:2851249-G-AFGC59565 **
27791893-T-G 25645746-T-G P1_Y2 **
7164456-A-C 7296415-A-C CTS1038 PF4645 ****
56846378-T-A **
56845496-T-G **
15698757-GACAC-G 13586877-GACAC-G 24×AC**
56840309-G-T **
17802194-A-G 15690314-A-G 8×AAG**
56840033-G-T **
2773757-G-T 2905716-G-T **
9147259-C-T 9309650-C-T ZS4530 **
14730197-AAATACT-A 12618265-AAATACT-A 8×AATACT**
9172681-T-G 9335072-T-G F192 **
13266160-T-G 11110484-T-G **
14769437-G-A 12657506-G-A YSC0000259 Z2761 ****
22783159-C-A 20621273-C-A 17×A**
7532276-GTATATATATATATATATATATATATATATATATA-G 7664235-GTATATATATATATATATATATATATATATATATA-G 28×TA**
13858001-A-T 11737295-A-T **
3667227-C-A 3799186-C-A **
3501187-A-C 3633146-A-C **
3250771-C-A 3382730-C-A **
3271707-C-A 3403666-C-A **
3274252-C-A 3406211-C-A **
3343333-G-A 3475292-G-A **
3455795-C-A 3587754-C-A **
3455881-C-A 3587840-C-A **
3546087-C-A 3678046-C-A **
3157934-G-T 3289893-G-T **
3550568-ACAACT-A 3682527-ACAACT-A **
3557710-C-A 3689669-C-A **
3591346-A-T 3723305-A-T **
3602661-C-A 3734620-C-A **
3621693-G-T 3753652-G-T **
3640407-G-T 3772366-G-T **
3229574-T-C 3361533-T-C **
3131846-G-T 3263805-G-T **
15793048-C-A 13681168-C-A **
14465312-C-A 12344585-C-A **
9427843-T-C 9590234-T-C **
8751098-GTA-G 8883057-GTA-G **
19340495-C-A 17228615-C-A **
10682784-C-A **
10971132-T-A **
10819043-C-A **
10033058-G-A 10195449-G-A **
2916240-GT-G 3048199-GT-G 11×T**
2699689-A-G 2831648-A-G **
2729875-G-A 2861834-G-A **
2775358-T-C 2907317-T-C **
2803607-C-A 2935566-C-A **
2810801-G-A 2942760-G-A **
2876833-C-A 3008792-C-A **
7199951-T-C 7331910-T-C **
7108728-C-A 7240687-C-A **
7223024-C-T 7354983-C-T 8×A**
10686608-T-A **
10673511-C-A **
10673838-C-A **
10678068-A-T **
10683767-C-G **
10685542-C-A **
10686593-TTCCAC-T **
10686610-C-T **
27570851-G-T 25424704-G-T P1_Y2 **
10686623-T-CCCTAC **
10686637-ACTCC-A **
26415676-C-CAA 24269529-C-CAA P1_Y1 20×A**
10757019-C-A **
10760581-C-G **
10769330-G-A **
10670878-C-A **
10669018-A-T **
10770657-G-A **
10625772-T-C **
10004774-C-A 10167165-C-A **
7231148-C-A 7363107-C-A **
10007694-C-A 10170085-C-A **
10020170-C-A 10182561-C-A **
27617638-T-A 25471491-T-A P1_Y2 **
10070367-C-A 10232758-C-A **
10659477-C-G **
10667057-A-T **
10659483-G-A **
10659507-T-C **
10661177-C-G **
10667026-T-C **
10667055-C-A **
10667056-T-G **
10770645-T-A **
10770692-C-T **
27617691-T-C 25471544-T-C P1_Y2 **
10893214-C-A **
10880369-C-A **
10880427-C-A **
10880546-G-T **
10880638-C-A **
10887976-C-A **
10887995-T-C **
10893377-G-T **
10869196-T-C **
10893602-G-T **
10899992-T-C **
10900155-C-A **
26106015-C-A 23959868-C-A P1_Y1 **
10929611-C-A **
10939052-A-G **
26152056-CT-C 24005909-CT-C P1_Y1 **
10866094-T-C **
10772427-A-C **
10816596-C-A **
10780324-G-T **
10781300-A-G **
10786388-C-A **
10798351-CA-C **
10798353-T-TG **
10799562-TTCTATTTCATTCCTC-T **
10839604-C-A **
10866074-T-A **
10861286-C-A **
10863200-C-T **
10863236-T-C **
10863242-G-T **
10866057-C-A **
10866065-T-A **
9996084-C-A 10158475-C-A **
10006187-A-G 10168578-A-G **
9985945-C-A 10148336-C-A **
7897618-G-T 8029577-G-T **
7656663-C-A 7788622-C-A **
7664237-T-A 7796196-T-A **
7768762-C-A 7900721-C-A **
28484320-C-A 26338173-C-A **
7854279-C-A 7986238-C-A **
7861194-T-C 7993153-T-C **
7990186-G-C 8122145-G-C **
7615206-C-A 7747165-C-A **
7991403-C-A 8123362-C-A **
8078336-G-C 8210295-G-C **
8109942-C-A 8241901-C-A **
28484208-C-A 26338061-C-A **
8230288-C-G 8362247-C-G **
8255818-A-T 8387777-A-T **
28481210-C-A 26335063-C-A **
7640916-A-G 7772875-A-G **
7536558-G-A 7668517-G-A **
8661664-T-C 8793623-T-C **
7346088-C-A 7478047-C-A **
7281105-T-C 7413064-T-C **
7281106-G-A 7413065-G-A **
7289493-T-C 7421452-T-C **
7307574-C-A 7439533-C-A **
7332922-C-A 7464881-C-A **
7340935-G-T 7472894-G-T **
7347418-A-G 7479377-A-G **
7536479-C-A 7668438-C-A **
7349113-T-A 7481072-T-A **
7374879-C-A 7506838-C-A **
7418470-C-A 7550429-C-A **
7436272-T-C 7568231-T-C **
7451294-CTTTT-C 7583253-CTTTT-C IR1_L 29×T**
7469359-T-A 7601318-T-A IR1_L **
7529612-C-G 7661571-C-G **
9965112-C-A 10127503-C-A **
28468791-C-A 26322644-C-A **
23259307-G-A 21097421-G-A **
9461823-A-G 9624214-A-G **
9025117-C-T 9187508-C-T **
9048108-T-C 9210499-T-C **
9063787-C-A 9226178-C-A **
9075978-A-G 9238369-A-G **
9088877-G-T 9251268-G-T **
9136706-C-A 9299097-C-A **
9513024-T-C 9675415-T-C **
9108276-A-C **
9735635-TC-T 9898026-TC-T IR3_Prx **
27733708-C-A 25587561-C-A P1_Y2 **
9865127-T-C 10027518-T-C **
9885049-C-T 10047440-C-T **
9919859-G-T 10082250-G-T **
27647519-C-A 25501372-C-A P1_Y2 **
9958017-C-A 10120408-C-A **
8666191-G-A 8798150-G-A **
9013239-C-A 9175630-C-A **
9057499-A-G **
9057494-T-C **
8672048-C-T 8804007-C-T **
9056471-T-C **
8697367-A-G 8829326-A-G **
9055636-T-G **
27791869-T-G 25645722-T-G P1_Y2 **
8751226-T-C 8883185-T-C **
8760536-TTG-T 8892495-TTG-T **
28361461-T-TCTG 26215314-T-TCTG P1_gr2 **
8911901-G-T 9043860-G-T **
27966055-A-AACAG 25819908-A-AACAG P1_Y2 **
23572587-C-A 21410701-C-A ***
56851435-G-A ***
27756185-C-A 25610038-C-A P1_Y2 ***
56707242-T-C ***
28485239-A-G 26339092-A-G ***
56835083-C-CCATTCCACTA ***
23625824-C-A 21463938-C-A ***
28598602-C-A 26452455-C-A ***
56707204-G-T ***
56707185-A-C ***
23491149-C-A 21329263-C-A ***
13141968-C-T 10631454-C-T ***
23189415-C-A 21027529-C-A ***
8139731-A-G 8271690-A-G ***
6132394-C-A 6264353-C-A ***
6359613-C-A 6491572-C-A ***
6541089-C-A 6673048-C-A ***
7456713-C-T 7588672-C-T IR1_L ***
7543498-C-A 7675457-C-A ***
7852666-A-G 7984625-A-G ***
8349288-C-A 8481247-C-A ***
5761157-C-A 5893116-C-A ***
8379466-C-A 8511425-C-A ***
8810101-C-A 8942060-C-A ***
8897115-C-A 9029074-C-A ***
8913482-G-T 9045441-G-T ***
9348079-C-T 9510470-C-T ***
9789340-G-GAT 9951731-G-GAT ***
6000790-C-A 6132749-C-A ***
5317486-A-T 5449445-A-T ***
9991303-G-T 10153694-G-T ***
22296513-G-T 20134627-G-T DYZ19 ***
22485486-C-T 20323600-C-T DYZ19 ***
8702810-GTTTT-G 8834769-GTTTT-G 21×T***
6523383-C-T 6655342-C-T PF192 ******
13476527-T-A 11320851-T-A ***
7654948-C-CT 7786907-C-CT 11×T***
3535987-C-CAT 3667946-C-CAT ***
22303851-T-C 20141965-T-C DYZ19 ***
4936897-C-A 5068856-C-A ***
58973100-ATTCCATTCCATTAGT-A,ATTCCATTCCATTCGA 56826953-ATTCCATTCCATTAGT-A,ATTCCATTCCATTCGA ***
14142476-CATT-C 12021770-CATT-C 5×ATT***
23127414-CAAAAAAA-C 20965528-CAAAAAAA-C 24×A***
9952390-C-A 10114781-C-A ***
2831983-C-A 2963942-C-A ***
2840099-CAA-C,CA 2972058-CAA-C,CA 20×A***
9952395-C-A 10114786-C-A ***
10034224-G-A 10196615-G-A ***
22556686-C-A 20394800-C-A ***
19259733-C-A 17147853-C-A ***
17375530-C-A 15263650-C-A ***
17502864-G-T 15390984-G-T ***
17859440-C-T 15747560-C-T ***
17944308-A-ACAG 15832428-A-ACAG ***
18712700-C-A 16600820-C-A ***
18895245-C-A 16783365-C-A ***
19378196-C-A 17266316-C-A ***
16627458-C-G 14515578-C-G ***
19494433-C-A 17382553-C-A ***
20707670-C-A 18545784-C-A P4_Prx ***
21139710-C-A 18977824-C-A ***
21244958-C-A 19083072-C-A ***
21477148-C-A 19315262-C-A ***
22103241-A-G 19941355-A-G ***
16957758-T-C 14845878-T-C ***
16045240-C-A 13933360-C-A ***
10669545-G-C ***
13478098-G-T 11322422-G-T ***
10688045-C-A,CGG ***
10880316-C-A ***
10909813-C-A ***
10987811-T-A ***
11022899-CT-C ***
11022921-C-G ***
13710943-C-A 11555267-C-A ***
15921663-C-A 13809783-C-A ***
14175981-C-A 12055275-C-A ***
14180694-A-G 12059988-A-G ***
14696893-A-T 12584959-A-T ***
14880219-C-A 12768289-C-A ***
15257562-T-C 13145646-T-C ***
15750502-CTTT-C 13638622-CTTT-C 18×T***
13477728-C-A 11322052-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

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