Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > FGC13742 > CTS11994 > FGC13758

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
275223
FGC-BigY
8E935
7750789-A-T 7882748-A-T FGC11224 YY+**
8622759-T-G 8754718-T-G FGC13744 YY+*
14262602-G-C 12141896-G-C FGC13752 YY++
17107672-T-C 14995792-T-C FGC13756 YY++
22068003-C-T 19906117-C-T FGC13763 YY+*
22478714-G-T 20316828-G-T FGC13764 DYZ19 +*
23147183-G-A 20985297-G-A FGC13767 YY+*
24873206-C-A 22727059-C-A FGC13769 g1 +*
19129333-G-T 17017453-G-T *****
17639415-G-T 15527535-G-T **
20556158-C-A 18394272-C-A P5_Dst **
10055424-C-T 10217815-C-T **
13454199-A-ATCCAT 11298523-A-ATCCAT **
26124458-ACGAAAG-A 23978311-ACGAAAG-A P1_Y1 *****
18384490-CAAAAA-C 16272610-CAAAAA-C P6_Gap 19×A**
28805793-GAACGT-G 26659646-GAACGT-G **
10055341-C-A 10217732-C-A **
7301079-A-G 7433038-A-G **
24629510-A-T 22483363-A-T P3_t2 **
16663612-C-A 14551732-C-A **
10055354-A-T 10217745-A-T **
16157686-A-G 14045806-A-G P8_Dst **
58996027-C-A 56849880-C-A **
5845336-T-C 5977295-T-C PR4417 **
24038972-A-G 21892825-A-G ***
24458709-C-A 22312562-C-A ***
23476277-C-A 21314391-C-A ***
24535264-A-C 22389117-A-C P3_t2 ***
23475331-C-A 21313445-C-A ***
24555007-G-A 22408860-G-A P3_t2 ***
23464936-A-G 21303050-A-G ***
23355169-C-A 21193283-C-A ***
23563701-C-A 21401815-C-A ***
24555070-C-A 22408923-C-A P3_t2 ***
23280329-C-A 21118443-C-A ***
24582475-T-A 22436328-T-A P3_t2 ***
24582544-A-G 22436397-A-G P3_t2 ***
23243073-G-C 21081187-G-C ***
24656569-T-G 22510422-T-G P3_b2 ***
23170313-C-A 21008427-C-A ***
24371873-G-C 22225726-G-C ***
23591112-G-A 21429226-G-A ***
24044905-A-C 21898758-A-C ***
23872158-G-C 21710272-G-C ***
24046173-A-T 21900026-A-T ***
24046179-G-T 21900032-G-T ***
24037490-C-A 21891343-C-A ***
23997006-C-A 21850859-C-A ***
23961140-C-A 21814993-C-A ***
24050813-C-A 21904666-C-A P3_b1 ***
24658267-A-C 22512120-A-C P3_b2 ***
23839034-C-A 21677148-C-A ***
24371871-T-G 22225724-T-G ***
24095517-C-A 21949370-C-A P3_b1 ***
24300839-G-T 22154692-G-T P3_t1 ***
24371867-A-T 22225720-A-T ***
24371868-T-A 22225721-T-A ***
23837109-C-A 21675223-C-A ***
23808144-C-G 21646258-C-G ***
24371869-G-T 22225722-G-T ***
13697389-T-TATGGAATGGAATGGAATGGAATGGA 11541713-T-TATGGAATGGAATGGAATGGAATGGA ***
25221569-G-T 23075422-G-T P2_r1 ***
24665814-G-A 22519667-G-A P3_b2 ***
26250748-T-G 24104601-T-G P1_Y1 ***
25446390-T-C 23300243-T-C P2_r2 ***
25455314-T-A 23309167-T-A P2_r2 ***
25466180-A-T 23320033-A-T P2_r2 ***
25492361-G-T 23346214-G-T P2_r2 ***
25515992-C-A 23369845-C-A P1_gr1 ***
25666199-T-A 23520052-T-A P1_b3 ***
25677094-G-T 23530947-G-T P1_b3 ***
25717456-G-A 23571309-G-A P1_b3 ***
26269231-A-T 24123084-A-T P1_Y1 ***
25429248-C-A 23283101-C-A P2_r2 ***
26280281-A-T 24134134-A-T P1_Y1 ***
26284838-T-G 24138691-T-G P1_Y1 ***
26328934-G-T 24182787-G-T P1_Y1 ***
26376518-G-A 24230371-G-A P1_Y1 ***
26890354-G-T 24744207-G-T P1_r3 ***
26912696-G-A 24766549-G-A P1_r3 ***
26948683-G-A 24802536-G-A P1_r3 ***
27033040-G-T 24886893-G-T P1_r4 ***
27095976-T-A 24949829-T-A P1_r4 ***
25445964-A-T 23299817-A-T P2_r2 ***
25415009-G-T 23268862-G-T P2_r2 ***
24728389-C-A 22582242-C-A P3_b2 ***
25256634-G-T 23110487-G-T P2_r1 ***
24752417-T-C 22606270-T-C P3_b2 ***
24785802-G-A 22639655-G-A P3_b2 ***
24847565-C-T 22701418-C-T P3_b2 ***
24861268-C-T 22715121-C-T P3_b2 ***
24877528-A-T 22731381-A-T A3529 g1 ***
23037897-G-A 20876011-G-A ***
25231949-A-G 23085802-A-G P2_r1 ***
25232230-A-C 23086083-A-C P2_r1 ***
25288384-T-C 23142237-T-C P2_r1 ***
25415006-T-A 23268859-T-A P2_r2 ***
25288779-A-T 23142632-A-T P2_r1 ***
25305277-T-C 23159130-T-C P2_r1 ***
25333835-C-A 23187688-C-A P2_r1 ***
25333840-C-T 23187693-C-T P2_r1 ***
25372030-A-G 23225883-A-G P2_r2 ***
25379017-A-T 23232870-A-T P2_r2 ***
25379022-A-C 23232875-A-C P2_r2 ***
25394623-T-C 23248476-T-C P2_r2 ***
25412730-T-G 23266583-T-G P2_r2 ***
23039584-C-A 20877698-C-A ***
22366187-T-C 20204301-T-C DYZ19 ***
22995876-C-A 20833990-C-A ***
20025460-T-C 17913580-T-C P5_Prx ***
19829433-A-C 17717553-A-C P5_Prx ***
19857592-T-A 17745712-T-A P5_Prx ***
19859284-A-T 17747404-A-T P5_Prx ***
19892901-A-T 17781021-A-T P5_Prx ***
19930472-A-T 17818592-A-T P5_Prx ***
19930474-A-T 17818594-A-T P5_Prx ***
20025456-T-C 17913576-T-C P5_Prx ***
20029599-C-A 17917719-C-A P5_Prx ***
19750549-C-A 17638669-C-A P5_Prx ***
20195397-G-T 18033511-G-T P5_Dst ***
20211725-A-T 18049839-A-T P5_Dst ***
20211784-C-T 18049898-C-T P5_Dst ***
20214475-T-G 18052589-T-G P5_Dst ***
20217430-C-A 18055544-C-A P5_Dst ***
20217929-G-T 18056043-G-T P5_Dst ***
20242778-G-T 18080892-G-T P5_Dst ***
20362504-C-A 18200618-C-A P5_Dst ***
19792458-C-A 17680578-C-A P5_Prx ***
19713182-C-T 17601302-C-T P5_Prx ***
20478932-A-G 18317046-A-G P5_Dst ***
19283072-C-A 17171192-C-A ***
18955932-G-A 16844052-G-A ***
18955933-C-A 16844053-C-A ***
18955934-T-A 16844054-T-A ***
19110029-A-G 16998149-A-G ***
19112693-C-A 17000813-C-A ***
19129380-A-T 17017500-A-T ***
19198112-G-T 17086232-G-T ***
19241542-C-A 17129662-C-A ***
19444891-A-G 17333011-A-G ***
19708209-T-C 17596329-T-C P5_Prx ***
19508291-G-A 17396411-G-A ***
19508303-T-C 17396423-T-C ***
19508304-G-A 17396424-G-A ***
19508305-A-G 17396425-A-G ***
19595852-C-T 17483972-C-T P5_Prx ***
19605785-T-G 17493905-T-G P5_Prx ***
19671528-C-A 17559648-C-A P5_Prx ***
19683856-T-A 17571976-T-A P5_Prx ***
20434266-G-A 18272380-G-A P5_Dst ***
20500909-G-C 18339023-G-C P5_Dst ***
22968999-G-T 20807113-G-T ***
22358182-C-G 20196296-C-G DYZ19 ***
21788513-C-A 19626627-C-A ***
21864003-C-A 19702117-C-A ***
21899772-T-G 19737886-T-G ***
21902123-A-T 19740237-A-T ***
22122265-C-A 19960379-C-A ***
22284913-T-A 20123027-T-A DYZ19 ***
22302474-A-G 20140588-A-G DYZ19 ***
27129805-G-A 24983658-G-A P1_g3 ***
21596927-G-T 19435041-G-T ***
22457365-T-G 20295479-T-G DYZ19 ***
22458956-G-A 20297070-G-A DYZ19 ***
22460821-T-C 20298935-T-C DYZ19 ***
22467732-A-T 20305846-A-T DYZ19 ***
22469574-T-C 20307688-T-C DYZ19 ***
22469861-C-A 20307975-C-A DYZ19 ***
22540433-C-A 20378547-C-A ***
22655009-A-G 20493123-A-G ***
21635400-C-A 19473514-C-A ***
21512308-T-C 19350422-T-C ***
20679227-C-T 18517341-C-T P4_Prx ***
21130223-C-A 18968337-C-A ***
20685171-G-T 18523285-G-T P4_Prx ***
20696083-G-T 18534197-G-T P4_Prx ***
20723380-G-A 18561494-G-A P4_Prx ***
20869223-C-A 18707337-C-A P4_Dst ***
20869268-C-T 18707382-C-T P4_Dst ***
20993576-C-T 18831690-C-T P4_Dst ***
21009053-A-T 18847167-A-T P4_Dst ***
21104895-T-C 18943009-T-C ***
21144540-C-A 18982654-C-A ***
21497630-C-A 19335744-C-A ***
21164604-A-G 19002718-A-G ***
21225173-A-G 19063287-A-G ***
21357490-C-A 19195604-C-A ***
21376779-C-A 19214893-C-A ***
21417740-C-A 19255854-C-A ***
21422301-C-G 19260415-C-G ***
21462683-C-A 19300797-C-A ***
21472290-C-T 19310404-C-T ***
27129799-T-C 24983652-T-C P1_g3 ***
27497096-G-T 25350949-G-T P1_Y2 ***
27130352-T-C 24984205-T-C P1_g3 ***
13478053-AGC-TGG 11322377-AGC-TGG ***
9932236-AGGA-TGGG 10094627-AGGA-TGGG ***
9985999-TC-T 10148390-TC-T ***
9991637-CTTTTTT-C 10154028-CTTTTTT-C 20×T***
13142443-GCCAG-TGCAA 10631929-GCCAG-TGCAA ***
13447321-CCACTCCAC-ACATTACAT 11291645-CCACTCCAC-ACATTACAT ***
13472212-CC-TT 11316536-CC-TT ***
13474747-ATGT-TTGA 11319071-ATGT-TTGA ***
13481361-TCC-GCA 11325685-TCC-GCA ***
9921538-GATAGCAA-AAGAGAAC 10083929-GATAGCAA-AAGAGAAC ***
13485613-AATGCCC-GATTCCT 11329937-AATGCCC-GATTCCT ***
13485625-GGCA-AGCC 11329949-GGCA-AGCC ***
13487858-TGG-AGA 11332182-TGG-AGA ***
13545372-A-AAAGC 11389696-A-AAAGC ***
13701328-GGAATA-AGATTG 11545652-GGAATA-AGATTG ***
13801529-CAG-GAA 11680823-CAG-GAA ***
13804130-TG-GA 11683424-TG-GA ***
13804144-TGCAATAGAAC-CGGAATGGACA 11683438-TGCAATAGAAC-CGGAATGGACA ***
9924378-CATCA-TATCG 10086769-CATCA-TATCG ***
9798063-G-GTTT 9960454-G-GTTT 17×T***
13855522-G-GATGGA 11734816-G-GATGGA 11×ATGGA***
13451160-CTCTAT-TTACAC 11295484-CTCTAT-TTACAC ***
58990472-G-T 56844325-G-T ***
58993357-T-C 56847210-T-C ***
59007965-A-C 56861818-A-C ***
59007992-C-A 56861845-C-A ***
59007994-T-A 56861847-T-A ***
59027211-A-G 56881064-A-G ***
14709276-AC-TG ***
7166640-A-ATTT 7298599-A-ATTT 12×T***
13472224-CC-AA 11316548-CC-AA ***
9654386-G-GAAAC 9816777-G-GAAAC IR3_Prx ***
7166638-ATA-TTT 7298597-ATA-TTT ***
7534406-G-GTTTT 7666365-G-GTTTT 19×T***
7567753-CTTTT-C 7699712-CTTTT-C 25×T***
7867887-A-AGAAT 7999846-A-AGAAT ***
8232953-AGCAGTTA-CTCATTCT 8364912-AGCAGTTA-CTCATTCT ***
8470549-CAAAAAA-C 8602508-CAAAAAA-C 22×A***
9654346-AGA-GAT 9816737-AGA-GAT IR3_Prx ***
9654366-G-GAAAC 9816757-G-GAAAC IR3_Prx ***
13852011-C-CGAATGGAATG 11731305-C-CGAATGGAATG 11×GAATG***
13858685-GAAT-AAAC 11737979-GAAT-AAAC ***
58985511-A-T 56839364-A-T ***
58977900-AGTAT-TGTAC 56831753-AGTAT-TGTAC ***
27971766-CAAAG-AAAAA 25825619-CAAAG-AAAAA P1_Y2 4×AAAGA***
28792476-CA-AG 26646329-CA-AG ***
58830397-C-CCCATTCCATT 56760418-C-CAATGGAATGG 11×CCATT***
58855332-GCA-TCC 56735537-TGC-GGA 4×CATTC***
58975677-GAA-CCG 56829530-GAA-CCG ***
58976117-CTCCAATCCA-TTACACTCCG 56829970-CTCCAATCCA-TTACACTCCG ***
58977725-CTTTC-ATTTT 56831578-CTTTC-ATTTT ***
58977739-ATTG-TTTA 56831592-ATTG-TTTA ***
58979090-CCCC-GCAT 56832943-CCCC-GCAT ***
25466553-AGGAGGAGGAGGGA-GGGGGGGGGGGGGG 23320406-AGGAGGAGGAGGGA-GGGGGGGGGGGGGG P2_r2 ***
58979100-GCATTCCC-CCACTCCA 56832953-GCATTCCC-CCACTCCA ***
58979250-CTC-ATT 56833103-CTC-ATT ***
58980449-CCAC-TCAA 56834302-CCAC-TCAA ***
58981147-TCTA-ATTG 56835000-TCTA-ATTG ***
58981164-CCT-GTG 56835017-CCT-GTG ***
58982969-CCCAT-GCCAG 56836822-CCCAT-GCCAG ***
20035076-A-AACAG 17923196-A-AACAG P5_Prx ***
18982585-AAG-A,AAA 16870705-AAG-A,AAA ***
27129847-TA-AT 24983700-TA-AT P1_g3 ***
25446426-CTTGA-TTTTT 23300279-CTTGA-TTTTT P2_r2 ***
14772676-ATTTTTTT-A 12660745-ATTTTTTT-A 21×T***
19948159-CTCCCTCCCTCCCTCCCTCCCTCCT-C 17836279-CTCCCTCCCTCCCTCCCTCCCTCCT-C P5_Prx ***
15048489-GTTTT-G 12936580-GTTTT-G 19×T***
15947949-AT-A 13836069-AT-A ***
16118603-TGGT-GGGG 14006723-TGGT-GGGG P8_Prx ***
16157790-AA-GG 14045910-AA-GG P8_Dst ***
19500149-GGTAGA-CATAGG 17388269-GGTAGA-CATAGG ***
19513578-ATTTTTTT-A 17401698-ATTTTTTT-A 20×T***
19631094-GTC-CTA 17519214-GTC-CTA P5_Prx ***
19930476-CT-AA 17818596-CT-AA P5_Prx 22×T***
20035058-C-CAAAG 17923178-C-CAAAG P5_Prx ***
25446396-ATG-TTT 23300249-ATG-TTT P2_r2 ***
20793453-AATATAT-A 18631567-AATATAT-A P4_Prx 12×AT***
21177211-GTTT-G 19015325-GTTT-G 19×T***
21355052-GAAAA-G 19193166-GAAAA-G 15×A***
22164567-GAC-AAA 20002681-GAC-AAA ***
22341346-TTG-ATT 20179460-TTG-ATT DYZ19 ***
22962414-GTTTT-G 20800528-GTTTT-G 20×T***
23127414-CAAAAAAAA-C 20965528-CAAAAAAAA-C 24×A***
23207189-GTTTT-G 21045303-GTTTT-G 14×T***
58988841-G-C 56842694-G-C ***
58982993-C-T 56836846-C-T ***
27150219-T-C 25004072-T-C P1_g3 ***
28117322-G-A 25971175-G-A P1_b4 ***
27896045-C-A 25749898-C-A P1_Y2 ***
27916474-C-A 25770327-C-A P1_Y2 ***
27918737-T-C 25772590-T-C P1_Y2 ***
28031744-A-G 25885597-A-G P1_Y2 ***
28033932-T-A 25887785-T-A P1_Y2 ***
28062547-A-C 25916400-A-C P1_Y2 ***
28098065-G-T 25951918-G-T P1_Y2 ***
28103972-C-T 25957825-C-T P1_Y2 ***
28145169-T-G 25999022-T-G P1_b4 ***
27873315-C-T 25727168-C-T P1_Y2 ***
28145176-A-G 25999029-A-G P1_b4 ***
28160815-G-T 26014668-G-T P1_b4 ***
28180690-C-A 26034543-C-A P1_b4 ***
28206168-C-A 26060021-C-A P1_b4 ***
28260266-T-A 26114119-T-A P1_b4 ***
28311279-A-G 26165132-A-G P1_b4 ***
28311284-G-C 26165137-G-C P1_b4 ***
28315823-G-C 26169676-G-C P1_b4 ***
27873319-C-T 25727172-C-T P1_Y2 ***
27864336-G-A 25718189-G-A P1_Y2 ***
28608477-A-C 26462330-A-C ***
18955930-G-A 16844050-G-A ***
27152202-C-A 25006055-C-A P1_g3 ***
27213485-G-T 25067338-G-T P1_g3 ***
27339122-C-A 25192975-C-A P1_g3 ***
27356209-T-C 25210062-T-C P1_g3 ***
27375825-C-T 25229678-C-T P1_g3 ***
27421793-G-A 25275646-G-A P1_g3 ***
27422047-A-G 25275900-A-G P1_g3 ***
27497089-G-T 25350942-G-T P1_Y2 ***
27499359-C-T 25353212-C-T P1_Y2 ***
27861040-G-T 25714893-G-T P1_Y2 17×T***
27499369-T-G 25353222-T-G P1_Y2 ***
27569458-A-T 25423311-A-T P1_Y2 ***
27585894-C-T 25439747-C-T P1_Y2 ***
27644196-G-A 25498049-G-A P1_Y2 ***
27713496-G-T 25567349-G-T P1_Y2 ***
27761272-G-T 25615125-G-T P1_Y2 ***
27771886-G-A 25625739-G-A P1_Y2 ***
27837948-C-T 25691801-C-T P1_Y2 ***
28536197-C-A 26390050-C-A ***
28655622-C-T 26509475-C-T ***
58981976-T-A 56835829-T-A ***
58980685-C-T 56834538-C-T ***
28819181-A-G 26673034-A-G ***
58855314-A-C 56735557-T-G ***
58876736-A-G 56714135-T-C ***
58887421-C-G 56703450-G-C ***
58893678-T-C 56697193-A-G ***
58976156-T-G 56830009-T-G ***
58978582-G-T 56832435-G-T ***
58979616-A-T 56833469-A-T ***
58981190-C-T 56835043-C-T ***
28804078-C-G 26657931-C-G ***
58981230-C-T 56835083-C-T ***
58981965-A-C 56835818-A-C ***
58981966-C-A 56835819-C-A ***
58981968-C-T 56835821-C-T ***
58981969-C-T 56835822-C-T ***
58981970-T-C 56835823-T-C ***
58981973-C-T 56835826-C-T ***
58981975-A-C 56835828-A-C ***
28804083-T-A 26657936-T-A ***
28804077-T-C 26657930-T-C ***
28655623-A-G 26509476-A-G ***
28733273-G-A 26587126-G-A ***
28655628-T-A 26509481-T-A ***
28661132-A-G 26514985-A-G ***
28661133-G-T 26514986-G-T ***
28661134-G-C 26514987-G-C ***
28661135-T-A 26514988-T-A ***
28661136-A-G 26514989-A-G ***
28661143-C-A 26514996-C-A ***
28707327-C-A 26561180-C-A ***
28769250-C-A 26623103-C-A ***
28804074-A-G 26657927-A-G ***
28769572-C-A 26623425-C-A ***
28780311-C-G 26634164-C-G ***
28787088-T-A 26640941-T-A ***
28787089-C-T 26640942-C-T ***
28791263-C-A 26645116-C-A ***
28804069-G-A 26657922-G-A ***
28804071-G-A 26657924-G-A ***
28804073-G-A 26657926-G-A ***
18955931-A-T 16844051-A-T ***
18836181-C-A 16724301-C-A ***
18955929-G-T 16844049-G-T ***
7128238-T-G 7260197-T-G ***
6862097-C-A 6994056-C-A ***
6915372-C-A 7047331-C-A ***
6992474-C-A 7124433-C-A ***
7030437-C-G 7162396-C-G ***
7090475-C-A 7222434-C-A ***
7099778-C-A 7231737-C-A ***
7102610-C-T 7234569-C-T ***
7128239-C-T 7260198-C-T ***
6769110-T-C 6901069-T-C ***
7128240-C-G 7260199-C-G ***
7131296-C-A 7263255-C-A ***
7132025-G-C 7263984-G-C ***
7184284-C-A 7316243-C-A ***
7280952-C-T 7412911-C-T 26×T***
7347858-C-A 7479817-C-A ***
7355944-C-A 7487903-C-A ***
7415430-C-A 7547389-C-A ***
6774268-C-T 6906227-C-T ***
6769108-T-A 6901067-T-A ***
7430013-C-A 7561972-C-A ***
6106082-G-A 6238041-G-A ***
4389402-G-C 4521361-G-C ***
4968699-G-A 5100658-G-A ***
5796327-C-A 5928286-C-A ***
5869595-C-T 6001554-C-T ***
5869596-T-C 6001555-T-C ***
5869599-C-A 6001558-C-A ***
5869600-T-A 6001559-T-A ***
5912096-G-T 6044055-G-T ***
6218541-T-C 6350500-T-C IR3_Dst ***
6769105-T-A 6901064-T-A ***
6234954-A-C 6366913-A-C IR3_Dst ***
6313768-C-A 6445727-C-A IR3_Dst ***
6346425-A-C 6478384-A-C ***
6359664-T-G 6491623-T-G ***
6399559-G-T 6531518-G-T ***
6748697-C-A 6880656-C-A ***
6767965-T-A 6899924-T-A ***
6767966-A-G 6899925-A-G ***
7424498-G-T 7556457-G-T ***
7470348-T-C 7602307-T-C IR1_L ***
4107586-T-C 4239545-T-C ***
9092623-C-A 9255014-C-A ***
8774528-G-T 8906487-G-T ***
8774531-T-C 8906490-T-C ***
8790150-T-G 8922109-T-G ***
8790152-T-C 8922111-T-C ***
8790157-A-G 8922116-A-G ***
8840547-C-A 8972506-C-A ***
8865901-C-A 8997860-C-A ***
8980646-G-T 9143037-G-T ***
9171610-A-T 9334001-A-T ***
8615803-G-T 8747762-G-T ***
9223986-T-C 9386377-T-C ***
9325217-C-G 9487608-C-G ***
9325243-C-G 9487634-C-G ***
9325271-A-G 9487662-A-G ***
9334112-A-C 9496503-A-C ***
9345013-T-G 9507404-T-G ***
9345019-A-G 9507410-A-G ***
9507936-T-A 9670327-T-A ***
8774522-C-T 8906481-C-T ***
8431719-C-A 8563678-C-A ***
7501227-T-G 7633186-T-G IR1_L ***
7866823-T-G 7998782-T-G ***
7542472-C-A 7674431-C-A ***
7578274-C-T 7710233-C-T ***
7579154-C-A 7711113-C-A ***
7635857-C-G 7767816-C-G ***
7646670-C-A 7778629-C-A ***
7735059-C-A 7867018-C-A ***
7764443-G-T 7896402-G-T ***
7825643-C-A 7957602-C-A ***
7871550-C-A 8003509-C-A ***
8351575-C-A 8483534-C-A ***
8095637-G-T 8227596-G-T ***
8095644-T-C 8227603-T-C ***
8095648-G-A 8227607-G-A ***
8153565-C-A 8285524-C-A ***
8153704-G-T 8285663-G-T ***
8214426-C-A 8346385-C-A YP301 FGC11523 ***
8296167-C-A 8428126-C-A ***
8345948-C-A 8477907-C-A ***
4388468-T-C 4520427-T-C ***
3436193-C-A 3568152-C-A ***
9507944-T-A 9670335-T-A ***
22278853-T-C 20116967-T-C DYZ19 ***
13869433-T-TGGATCGTTATGGAAA 11748727-T-TGGATCGTTATGGAAA ***
16118570-A-ATTT 14006690-A-ATTT P8_Prx 31×T******
19346426-T-C 17234546-T-C ***
19346427-C-T 17234547-C-T ***
19682174-C-CAAAA 17570294-C-CAAAA P5_Prx 30×A******
19857591-AT-A,AA 17745711-AT-A,AA P5_Prx ***
20741994-A-T 18580108-A-T P4_Prx ***
22252054-G-A 20090168-G-A DYZ19 ***
23761606-G-A 21599720-G-A ***
13869414-G-C 11748708-G-C ***
24311992-C-T 22165845-C-T P3_t1 ***
24891190-A-AT 22745043-A-AT g1 10×T***
25247673-C-T 23101526-C-T P2_r1 ***
27791947-T-TCTTCTG 25645800-T-TCTTCTG P1_Y2 ******
27792011-T-C 25645864-T-C P1_Y2 ***
58829480-ATTCCATTCCT-A 56761376-AGGAAAGGAAT-A ***
58973992-A-C 56827845-A-C ***
58973993-CTCGAT-G,T 56827846-CTCGAT-G,T ***
13869424-G-A 11748718-G-A ***
13832506-AGGAAT-A,T 11711800-AGGAAT-A,T 12×GGAAT***
58980104-C-T 56833957-C-T ***
13676638-A-T 11520962-A-T ***
58973986-C-T 56827839-C-T ***
13843791-AATCAG-A 11723085-AATCAG-A ***
13843800-T-G 11723094-T-G ***
21651832-AT-A 19489946-AT-A ***
13962037-C-T 11841331-C-T ***
9987264-C-T 10149655-C-T ***
13459102-G-A,C 11303426-G-A,C ***
13453401-TTCCTA-T,TTCCAT 11297725-TTCCTA-T,TTCCAT ***
13694102-A-C 11538426-A-C 4×AATGG***
13821177-AGGAATGGAAT-A 11700471-AGGAATGGAAT-A 10×GGAAT***
13694460-TGGAAA-T,TGGAAT 11538784-TGGAAA-T,TGGAAT ***
13717060-AGAACGGACTG-A 11561384-AGAACGGACTG-A ***
13748530-A-G 11592854-A-G ***
13802871-T-C 11682165-T-C ***
13802872-G-C 11682166-G-C ***
13802888-G-C 11682182-G-C ***
13802891-T-TGGAAC 11682185-T-TGGAAC ***
13815557-G-GGAATA 11694851-G-GGAATA ***
58974000-C-T 56827853-C-T ***
59007969-A-C 56861822-A-C ***
3436187-G-T 3568146-G-T ***
3436194-A-G 3568153-A-G ***
10004885-A-G 10167276-A-G FGC60878 ***
13131646-A-G 10621132-A-G ***
13454813-A-G 11299137-A-G ***
13853698-G-A 11732992-G-A Z19599 ***
14379411-G-T 12258707-G-T F18898 ***
13839840-G-C 11719134-G-C ***
9924359-C-A 10086750-C-A ***
9935934-G-A 10098325-G-A ***
10022237-T-A 10184628-T-A ***
8095655-T-C 8227614-T-C Y25319 ***
17081249-A-T 14969369-A-T ***
10073221-G-A 10235612-G-A ***
9924378-C-T 10086769-C-T ***
13485608-G-A 11329932-G-A ***
2687990-G-A 2819949-G-A ***
2842920-A-G 2974879-A-G ***
2861409-C-G 2993368-C-G ***
2934095-A-T 3066054-A-T 15×T***
8650024-GAA-G 8781983-GAA-G ***
5506036-C-T 5637995-C-T ***
19892900-G-T 17781020-G-T P5_Prx ***
19663063-T-G 17551183-T-G P5_Prx ***
58982963-T-C 56836816-T-C ***
24300840-C-T 22154693-C-T P3_t1 ***
27078013-G-C 24931866-G-C P1_r4 24×AC***
26117897-G-A 23971750-G-A P1_Y1 ***
13452873-G-GCATTCCATTCCATTC 11297197-G-GCATTCCATTCCATTC 14×CATTC***
13709739-A-G 11554063-A-G ***
9921530-G-T 10083921-G-T ***
13541293-AT-A 11385617-AT-A ***
58979225-TTCT-CTCC 56833078-TTCT-CTCC ***
5506029-G-A 5637988-G-A ***
21953533-A-T 19791647-A-T ***
13138223-T-C 10627709-T-C ***
13541288-G-A 11385612-G-A ***
22366201-A-G 20204315-A-G DYZ19 ***
23429908-C-A 21268022-C-A 13×A***
9216002-A-C 9378393-A-C ***
9304878-C-G 9467269-C-G ***
25376535-AC-TT 23230388-AC-TT P2_r2 ***
9507937-C-A 9670328-C-A ***
9520362-G-T 9682753-G-T ***
18955928-G-A 16844048-G-A ***
16041827-T-C 13929947-T-C ***
15497018-C-A 13385138-C-A ***
15605792-C-A 13493912-C-A ***
15742310-A-G 13630430-A-G ***
15745451-A-G 13633571-A-G ***
15767033-T-A 13655153-T-A ***
15834477-G-A 13722597-G-A ***
15947218-C-A 13835338-C-A ***
16053014-C-A 13941134-C-A ***
15399983-C-A 13288103-C-A ***
16060312-C-A 13948432-C-A ***
16064986-A-G 13953106-A-G ***
16321688-A-G 14209808-A-G ***
16321720-C-G 14209840-C-G ***
16351635-C-A 14239755-C-A ***
16429187-G-C 14317307-G-C ***
16484298-A-T 14372418-A-T ***
16484307-C-T 14372427-C-T ***
15401395-T-C 13289515-T-C ***
15315337-C-A 13203442-C-A ***
16656629-C-A 14544749-C-A ***
14949099-C-A 12837173-C-A ***
14592301-C-T 12480501-C-T ***
14621025-A-G 12509223-A-G ***
14693862-C-A 12581928-C-A ***
14754262-T-C 12642331-T-C ***
14754263-G-A 12642332-G-A ***
14776939-T-A 12665008-T-A ***
14780984-C-G 12669054-C-G ***
14787758-G-A 12675828-G-A 10×TA***
15022981-T-C 12911069-T-C ***
15310960-C-A 13199065-C-A ***
15081702-A-G 12969792-A-G ***
15081705-T-G 12969795-T-G ***
15115749-C-A 13003836-C-A ***
15177462-A-G 13065548-A-G ***
15223624-C-A 13111710-C-A ***
15236143-G-A 13124229-G-A ***
15278508-C-A 13166597-C-A ***
15283825-G-T 13171924-G-T ***
16529908-C-A 14418028-C-A ***
16932067-G-T 14820187-G-T ***
14497545-G-T 12385750-G-T ***
18534044-A-G 16422164-A-G P6_Dst ***
18391812-C-A 16279932-C-A P6_Gap ***
18395902-C-A 16284022-C-A P6_Gap ***
18396620-T-G 16284740-T-G P6_Gap ***
18412317-C-A 16300437-C-A P6_Gap ***
18429190-T-C 16317310-T-C P6_Dst ***
18443075-A-C 16331195-A-C P6_Dst ***
18500001-G-T 16388121-G-T P6_Dst ***
18511615-G-T 16399735-G-T P6_Dst ***
18792839-G-C 16680959-G-C ***
18146449-C-A 16034569-C-A ***
9469186-A-G 9631577-A-G FGC43119 ***
18892544-T-C 16780664-T-C ***
18924939-C-A 16813059-C-A ***
18955920-G-T 16844040-G-T ***
18955921-C-T 16844041-C-T ***
18955922-A-T 16844042-A-T ***
18955923-C-A 16844043-C-A ***
18955927-G-A 16844047-G-A ***
18177228-C-A 16065348-C-A ***
18102021-C-A 15990141-C-A ***
17135630-G-C 15023750-G-C ***
17503947-A-T 15392067-A-T ***
17200187-C-A 15088307-C-A ***
17230454-G-T 15118574-G-T ***
17352432-C-A 15240552-C-A ***
17380156-C-A 15268276-C-A FGC26858 ***
17387389-A-G 15275509-A-G ***
17448099-C-G 15336219-C-G ***
17481092-C-A 15369212-C-A ***
17497807-C-A 15385927-C-A ***
17544033-C-A 15432153-C-A ***
17940650-C-A 15828770-C-A ***
17545696-C-G 15433816-C-G ***
17598059-C-A 15486179-C-A ***
17648680-G-T 15536800-G-T ***
17696970-C-T 15585090-C-T ***
17840438-G-A 15728558-G-A ***
17854290-T-C 15742410-T-C ***
17869811-C-A 15757931-C-A ***
17926376-A-C 15814496-A-C ***
14578052-C-A 12466252-C-A ***
14495877-C-A 12384074-C-A ***
9598197-G-A 9760588-G-A IR3_Prx ***
13455683-C-G 11300007-C-G ***
13253919-C-A 11098243-C-A ***
13302101-A-T 11146425-A-T ***
13303654-G-A 11147978-G-A ***
13409249-C-A 11253573-C-A ***
13448172-C-G 11292496-C-G ***
13448182-G-C 11292506-G-C ***
13452015-T-G 11296339-T-G ***
13454817-C-A 11299141-C-A ***
13456036-T-A 11300360-T-A ***
13227761-A-C 11072085-A-C ***
13456042-T-G 11300366-T-G ***
13459434-C-A 11303758-C-A ***
13463680-G-C 11308004-G-C ***
13463706-T-A 11308030-T-A ***
13463708-G-C 11308032-G-C ***
13463713-G-T 11308037-G-T ***
13466108-G-T 11310432-G-T ***
13481375-T-G 11325699-T-G ***
13229488-C-T 11073812-C-T ***
13212515-C-A 11056839-C-A ***
13484033-G-C 11328357-G-C ***
9924397-A-C 10086788-A-C ***
9602646-G-T 9765037-G-T IR3_Prx ***
9602652-C-T 9765043-C-T IR3_Prx ***
9749993-T-A 9912384-T-A ***
9839402-C-A 10001793-C-A ***
9906798-C-A 10069189-C-A ***
9921489-C-A 10083880-C-A ***
9921516-G-A 10083907-G-A ***
9924382-A-G 10086773-A-G ***
9924403-C-A 10086794-C-A ***
13209239-C-A 11053563-C-A ***
9934588-A-C 10096979-A-C ***
9940967-T-C 10103358-T-C ***
9952516-G-A 10114907-G-A ***
10020214-T-A 10182605-T-A ***
10020215-T-A 10182606-T-A ***
10088703-T-A 10251094-T-A ***
10089967-C-A 10252358-C-A ***
13125163-T-A 10614649-T-A ***
13481828-C-A 11326152-C-A ***
13484329-G-T 11328653-G-T ***
14447478-C-A 12326751-C-A ***
14201835-C-A 12081129-C-A ***
13859849-G-A 11739143-G-A ***
13860394-G-C 11739688-G-C ***
13939263-C-A 11818557-C-A ***
13962034-A-T 11841328-A-T ***
14054877-T-C 11934171-T-C ***
14075572-C-A 11954866-C-A ***
14100846-C-A 11980140-C-A ***
14115824-C-A 11995118-C-A ***
14205021-C-T 12084315-C-T ***
13858839-G-T 11738133-G-T ***
14205025-A-G 12084319-A-G ***
14213761-A-G 12093055-A-G ***
14255016-C-A 12134310-C-A ***
14264435-C-T 12143729-C-T ***
14299757-G-A 12179051-G-A ***
14302889-A-G 12182183-A-G ***
14421282-G-T 12300557-G-T ***
14443177-T-C 12322450-T-C ***
13859833-T-G 11739127-T-G ***
13855544-T-C 11734838-T-C ***
13489374-C-T 11333698-C-T ***
13709774-G-C 11554098-G-C ***
13489799-C-A 11334123-C-A F10866 ***
13523716-A-G 11368040-A-G ***
13575932-C-A 11420256-C-A ***
13689934-C-A 11534258-C-A ***
13709734-A-G 11554058-A-G ***
13709735-G-A 11554059-G-A ***
13709737-A-T 11554061-A-T ***
13709738-T-G 11554062-T-G ***
13709781-T-G 11554105-T-G ***
13855535-G-C 11734829-G-C ***
13710027-C-A 11554351-C-A ***
13714673-A-C 11558997-A-C ***
13729152-T-C 11573476-T-C ***
13731757-G-A 11576081-G-A ***
13799006-G-T 11678300-G-T ***
13842745-A-T 11722039-A-T ***
13853677-G-C 11732971-G-C ***
13853678-C-G 11732972-C-G ***
25221549-C-CT,T 23075402-C-CT,T P2_r1 19×T***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

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