Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > FGC13742 > CTS11994 > FGC13758

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
275223
FGC-BigY
8E935
7750789-A-T 7882748-A-T FGC11224 YY+**
24873206-C-A 22727059-C-A FGC13769 g1 +*
17107672-T-C 14995792-T-C FGC13756 YY++
23147183-G-A 20985297-G-A FGC13767 YY+*
22478714-G-T 20316828-G-T FGC13764 DYZ19 +*
14262602-G-C 12141896-G-C FGC13752 YY++
8622759-T-G 8754718-T-G FGC13744 YY+*
22068003-C-T 19906117-C-T FGC13763 YY+*
9934273-T-G 10096664-T-G FGC13749 Y*
10055424-C-T 10217815-C-T **
16157686-A-G 14045806-A-G P8_Dst **
19129333-G-T 17017453-G-T *****
10055354-A-T 10217745-A-T **
26124458-ACGAAAG-A 23978311-ACGAAAG-A P1_Y1 *****
7301079-A-G 7433038-A-G **
8773858-CAAAA-C 8905817-CAAAA-C 16×A**
8671512-C-A 8803471-C-A **
20556158-C-A 18394272-C-A P5_Dst **
17639415-G-T 15527535-G-T **
28805793-GAACGT-G 26659646-GAACGT-G **
13454199-A-ATCCAT 11298523-A-ATCCAT **
18384490-CAAAAA-C 16272610-CAAAAA-C P6_Gap 19×A**
24629510-A-T 22483363-A-T P3_t2 **
7195307-CAAA-C 7327266-CAAA-C 16×A**
58996027-C-A 56849880-C-A **
16663612-C-A 14551732-C-A **
10055341-C-A 10217732-C-A **
17816063-TTATA-T 15704183-TTATA-T 17×TA**
5845336-T-C 5977295-T-C PR4417 **
24371867-A-T 22225720-A-T ***
24371868-T-A 22225721-T-A ***
24658267-A-C 22512120-A-C P3_b2 ***
24371869-G-T 22225722-G-T ***
24656569-T-G 22510422-T-G P3_b2 ***
24582475-T-A 22436328-T-A P3_t2 ***
24582544-A-G 22436397-A-G P3_t2 ***
24371873-G-C 22225726-G-C ***
24555070-C-A 22408923-C-A P3_t2 ***
24371871-T-G 22225724-T-G ***
24555007-G-A 22408860-G-A P3_t2 ***
24535264-A-C 22389117-A-C P3_t2 ***
24458709-C-A 22312562-C-A ***
13697389-T-TATGGAATGGAATGGAATGGAATGGA 11541713-T-TATGGAATGGAATGGAATGGAATGGA ***
24046173-A-T 21900026-A-T ***
24300839-G-T 22154692-G-T P3_t1 ***
23808144-C-G 21646258-C-G ***
23041196-C-A 20879310-C-A ***
23170313-C-A 21008427-C-A ***
23243073-G-C 21081187-G-C ***
23280329-C-A 21118443-C-A ***
23355169-C-A 21193283-C-A ***
23464936-A-G 21303050-A-G ***
23475331-C-A 21313445-C-A ***
23476277-C-A 21314391-C-A ***
23563701-C-A 21401815-C-A ***
23591112-G-A 21429226-G-A ***
23831279-G-T 21669393-G-T ***
24095517-C-A 21949370-C-A P3_b1 ***
23837109-C-A 21675223-C-A ***
23839034-C-A 21677148-C-A ***
23872158-G-C 21710272-G-C ***
23961140-C-A 21814993-C-A ***
23997006-C-A 21850859-C-A ***
24037490-C-A 21891343-C-A ***
24038972-A-G 21892825-A-G ***
24044905-A-C 21898758-A-C ***
24046179-G-T 21900032-G-T ***
24050813-C-A 21904666-C-A P3_b1 ***
24665814-G-A 22519667-G-A P3_b2 ***
25256634-G-T 23110487-G-T P2_r1 ***
24728389-C-A 22582242-C-A P3_b2 ***
26912696-G-A 24766549-G-A P1_r3 ***
25515992-C-A 23369845-C-A P1_gr1 ***
25666199-T-A 23520052-T-A P1_b3 ***
25677094-G-T 23530947-G-T P1_b3 ***
26250748-T-G 24104601-T-G P1_Y1 ***
26269231-A-T 24123084-A-T P1_Y1 ***
26280281-A-T 24134134-A-T P1_Y1 ***
26284838-T-G 24138691-T-G P1_Y1 ***
26328934-G-T 24182787-G-T P1_Y1 ***
26376518-G-A 24230371-G-A P1_Y1 ***
26890354-G-T 24744207-G-T P1_r3 ***
26948683-G-A 24802536-G-A P1_r3 ***
25466180-A-T 23320033-A-T P2_r2 ***
27033040-G-T 24886893-G-T P1_r4 ***
27129799-T-C 24983652-T-C P1_g3 ***
27129805-G-A 24983658-G-A P1_g3 ***
27130335-G-A 24984188-G-A P1_g3 ***
27130352-T-C 24984205-T-C P1_g3 ***
27150219-T-C 25004072-T-C P1_g3 ***
27152202-C-A 25006055-C-A P1_g3 ***
27213485-G-T 25067338-G-T P1_g3 ***
27339122-C-A 25192975-C-A P1_g3 ***
27356209-T-C 25210062-T-C P1_g3 ***
25492361-G-T 23346214-G-T P2_r2 ***
25455314-T-A 23309167-T-A P2_r2 ***
24752417-T-C 22606270-T-C P3_b2 ***
25305277-T-C 23159130-T-C P2_r1 ***
24785802-G-A 22639655-G-A P3_b2 ***
24847565-C-T 22701418-C-T P3_b2 ***
24861268-C-T 22715121-C-T P3_b2 ***
24877528-A-T 22731381-A-T A3529 g1 ***
25221569-G-T 23075422-G-T P2_r1 ***
25231949-A-G 23085802-A-G P2_r1 ***
25232230-A-C 23086083-A-C P2_r1 ***
23037897-G-A 20876011-G-A ***
25288384-T-C 23142237-T-C P2_r1 ***
25288779-A-T 23142632-A-T P2_r1 ***
25333835-C-A 23187688-C-A P2_r1 ***
25446390-T-C 23300243-T-C P2_r2 ***
25333840-C-T 23187693-C-T P2_r1 ***
25372030-A-G 23225883-A-G P2_r2 ***
25379017-A-T 23232870-A-T P2_r2 ***
25379022-A-C 23232875-A-C P2_r2 ***
25394623-T-C 23248476-T-C P2_r2 ***
25412730-T-G 23266583-T-G P2_r2 ***
25415006-T-A 23268859-T-A P2_r2 ***
25415009-G-T 23268862-G-T P2_r2 ***
25429248-C-A 23283101-C-A P2_r2 ***
25445964-A-T 23299817-A-T P2_r2 ***
23039584-C-A 20877698-C-A ***
22366187-T-C 20204301-T-C DYZ19 ***
22995876-C-A 20833990-C-A ***
19857592-T-A 17745712-T-A P5_Prx ***
19595852-C-T 17483972-C-T P5_Prx ***
19605785-T-G 17493905-T-G P5_Prx ***
19671528-C-A 17559648-C-A P5_Prx ***
19683856-T-A 17571976-T-A P5_Prx ***
19708209-T-C 17596329-T-C P5_Prx ***
19713182-C-T 17601302-C-T P5_Prx ***
19750549-C-A 17638669-C-A P5_Prx ***
19792458-C-A 17680578-C-A P5_Prx ***
19829433-A-C 17717553-A-C P5_Prx ***
19859284-A-T 17747404-A-T P5_Prx ***
19508304-G-A 17396424-G-A ***
19892901-A-T 17781021-A-T P5_Prx ***
19930472-A-T 17818592-A-T P5_Prx ***
19930474-A-T 17818594-A-T P5_Prx ***
20025456-T-C 17913576-T-C P5_Prx ***
20025460-T-C 17913580-T-C P5_Prx ***
20029599-C-A 17917719-C-A P5_Prx ***
20195397-G-T 18033511-G-T P5_Dst ***
20211725-A-T 18049839-A-T P5_Dst ***
20211784-C-T 18049898-C-T P5_Dst ***
19508305-A-G 17396425-A-G ***
19508303-T-C 17396423-T-C ***
20217430-C-A 18055544-C-A P5_Dst ***
18955931-A-T 16844051-A-T ***
18924939-C-A 16813059-C-A ***
18955920-G-T 16844040-G-T ***
18955921-C-T 16844041-C-T ***
18955922-A-T 16844042-A-T ***
18955923-C-A 16844043-C-A ***
18955927-G-A 16844047-G-A ***
18955928-G-A 16844048-G-A ***
18955929-G-T 16844049-G-T ***
18955930-G-A 16844050-G-A ***
18955932-G-A 16844052-G-A ***
19508291-G-A 17396411-G-A ***
18955933-C-A 16844053-C-A ***
18955934-T-A 16844054-T-A ***
19110029-A-G 16998149-A-G ***
19112693-C-A 17000813-C-A ***
19129380-A-T 17017500-A-T ***
19198112-G-T 17086232-G-T ***
19241542-C-A 17129662-C-A ***
19283072-C-A 17171192-C-A ***
19444891-A-G 17333011-A-G ***
20214475-T-G 18052589-T-G P5_Dst ***
20217929-G-T 18056043-G-T P5_Dst ***
22968999-G-T 20807113-G-T ***
22358182-C-G 20196296-C-G DYZ19 ***
21596927-G-T 19435041-G-T ***
21635400-C-A 19473514-C-A ***
21788513-C-A 19626627-C-A ***
21864003-C-A 19702117-C-A ***
21899772-T-G 19737886-T-G ***
21902123-A-T 19740237-A-T ***
22122265-C-A 19960379-C-A ***
22284913-T-A 20123027-T-A DYZ19 ***
22302474-A-G 20140588-A-G DYZ19 ***
27421793-G-A 25275646-G-A P1_g3 ***
21497630-C-A 19335744-C-A ***
22457365-T-G 20295479-T-G DYZ19 ***
22458956-G-A 20297070-G-A DYZ19 ***
22460821-T-C 20298935-T-C DYZ19 ***
22467732-A-T 20305846-A-T DYZ19 ***
22469574-T-C 20307688-T-C DYZ19 ***
22469861-C-A 20307975-C-A DYZ19 ***
22540433-C-A 20378547-C-A ***
22655009-A-G 20493123-A-G ***
22903832-G-A 20741946-G-A ***
21512308-T-C 19350422-T-C ***
21472290-C-T 19310404-C-T ***
20242778-G-T 18080892-G-T P5_Dst ***
20869268-C-T 18707382-C-T P4_Dst ***
20362504-C-A 18200618-C-A P5_Dst ***
20434266-G-A 18272380-G-A P5_Dst ***
20478932-A-G 18317046-A-G P5_Dst ***
20500909-G-C 18339023-G-C P5_Dst ***
20679227-C-T 18517341-C-T P4_Prx ***
20685171-G-T 18523285-G-T P4_Prx ***
20696083-G-T 18534197-G-T P4_Prx ***
20723380-G-A 18561494-G-A P4_Prx ***
20869223-C-A 18707337-C-A P4_Dst ***
20993576-C-T 18831690-C-T P4_Dst ***
21462683-C-A 19300797-C-A ***
21009053-A-T 18847167-A-T P4_Dst ***
21104895-T-C 18943009-T-C ***
21130223-C-A 18968337-C-A ***
21144540-C-A 18982654-C-A ***
21164604-A-G 19002718-A-G ***
21225173-A-G 19063287-A-G ***
21357490-C-A 19195604-C-A ***
21376779-C-A 19214893-C-A ***
21417740-C-A 19255854-C-A ***
21422301-C-G 19260415-C-G ***
27375825-C-T 25229678-C-T P1_g3 ***
27771886-G-A 25625739-G-A P1_Y2 ***
27422047-A-G 25275900-A-G P1_g3 ***
13487858-TGG-AGA 11332182-TGG-AGA ***
9991637-CTTTTTT-C 10154028-CTTTTTT-C 20×T***
13142443-GCCAG-TGCAA 10631929-GCCAG-TGCAA ***
13447321-CCACTCCAC-ACATTACAT 11291645-CCACTCCAC-ACATTACAT ***
13472212-CC-TT 11316536-CC-TT ***
13474747-ATGT-TTGA 11319071-ATGT-TTGA ***
13478053-AGC-TGG 11322377-AGC-TGG ***
13481361-TCC-GCA 11325685-TCC-GCA ***
13485613-AATGCCC-GATTCCT 11329937-AATGCCC-GATTCCT ***
13485625-GGCA-AGCC 11329949-GGCA-AGCC ***
13545372-A-AAAGC 11389696-A-AAAGC ***
9932236-AGGA-TGGG 10094627-AGGA-TGGG ***
13701328-GGAATA-AGATTG 11545652-GGAATA-AGATTG ***
13801529-CAG-GAA 11680823-CAG-GAA ***
13804130-TG-GA 11683424-TG-GA ***
13804144-TGCAATAGAAC-CGGAATGGACA 11683438-TGCAATAGAAC-CGGAATGGACA ***
13852011-C-CGAATGGAATG 11731305-C-CGAATGGAATG 11×GAATG***
13855522-G-GATGGA 11734816-G-GATGGA 11×ATGGA***
13858685-GAAT-AAAC 11737979-GAAT-AAAC ***
14772676-ATTTTTTT-A 12660745-ATTTTTTT-A 21×T***
14823386-GTT-G 12711453-GTT-G 12×T***
9985999-TC-T 10148390-TC-T ***
9924378-CATCA-TATCG 10086769-CATCA-TATCG ***
15048489-GTTTT-G 12936580-GTTTT-G 19×T***
7414277-C-CA 7546236-C-CA 27×A***
59027211-A-G 56881064-A-G ***
14709276-AC-TG ***
7166640-A-ATTT 7298599-A-ATTT 12×T***
13451160-CTCTAT-TTACAC 11295484-CTCTAT-TTACAC ***
13472224-CC-AA 11316548-CC-AA ***
2777828-TAAAA-T 2909787-TAAAA-T 15×A***
2798710-ATTTTT-A 2930669-ATTTTT-A 20×T***
6265032-T-TCA 6396991-T-TCA IR3_Dst ***
7166638-ATA-TTT 7298597-ATA-TTT ***
7534406-G-GTTTT 7666365-G-GTTTT 19×T***
9921538-GATAGCAA-AAGAGAAC 10083929-GATAGCAA-AAGAGAAC ***
7567753-CTTTT-C 7699712-CTTTT-C 25×T***
7867887-A-AGAAT 7999846-A-AGAAT ***
8232953-AGCAGTTA-CTCATTCT 8364912-AGCAGTTA-CTCATTCT ***
8470549-CAAAAAA-C 8602508-CAAAAAA-C 22×A***
8498338-CAAA-C 8630297-CAAA-C 16×A***
9654346-AGA-GAT 9816737-AGA-GAT IR3_Prx ***
9654366-G-GAAAC 9816757-G-GAAAC IR3_Prx ***
9654386-G-GAAAC 9816777-G-GAAAC IR3_Prx ***
9798063-G-GTTT 9960454-G-GTTT 17×T***
14847004-CAAAAAA-C 12735070-CAAAAAA-C 20×A***
15842557-C-CTTTCT 13730677-C-CTTTCT 13×T***
59007992-C-A 56861845-C-A ***
58977739-ATTG-TTTA 56831592-ATTG-TTTA ***
25466553-AGGAGGAGGAGGGA-GGGGGGGGGGGGGG 23320406-AGGAGGAGGAGGGA-GGGGGGGGGGGGGG P2_r2 ***
27129847-TA-AT 24983700-TA-AT P1_g3 ***
27971766-CAAAG-AAAAA 25825619-CAAAG-AAAAA P1_Y2 4×AAAGA***
28792476-CA-AG 26646329-CA-AG ***
58830397-C-CCCATTCCATT 56760418-C-CAATGGAATGG 11×CCATT***
58855332-GCA-TCC 56735537-TGC-GGA 4×CATTC***
58975677-GAA-CCG 56829530-GAA-CCG ***
58976117-CTCCAATCCA-TTACACTCCG 56829970-CTCCAATCCA-TTACACTCCG ***
58977725-CTTTC-ATTTT 56831578-CTTTC-ATTTT ***
58977900-AGTAT-TGTAC 56831753-AGTAT-TGTAC ***
25446396-ATG-TTT 23300249-ATG-TTT P2_r2 ***
58979090-CCCC-GCAT 56832943-CCCC-GCAT ***
58979100-GCATTCCC-CCACTCCA 56832953-GCATTCCC-CCACTCCA ***
58979250-CTC-ATT 56833103-CTC-ATT ***
58980449-CCAC-TCAA 56834302-CCAC-TCAA ***
58981147-TCTA-ATTG 56835000-TCTA-ATTG ***
58981164-CCT-GTG 56835017-CCT-GTG ***
58982969-CCCAT-GCCAG 56836822-CCCAT-GCCAG ***
20035076-A-AACAG 17923196-A-AACAG P5_Prx ***
18982585-AAG-A,AAA 16870705-AAG-A,AAA ***
25446426-CTTGA-TTTTT 23300279-CTTGA-TTTTT P2_r2 ***
23207189-GTTTT-G 21045303-GTTTT-G 14×T***
15947949-AT-A 13836069-AT-A ***
19513578-ATTTTTTT-A 17401698-ATTTTTTT-A 20×T***
16118603-TGGT-GGGG 14006723-TGGT-GGGG P8_Prx ***
16157790-AA-GG 14045910-AA-GG P8_Dst ***
16301002-GAAAAA-G 14189122-GAAAAA-G 18×A***
16945883-TAAA-T 14834003-TAAA-T 15×A***
17419439-ATTTTTT-A 15307559-ATTTTTT-A 25×T***
17676029-CTTTT-C 15564149-CTTTT-C 15×T***
19034756-CAAA-C 16922876-CAAA-C 15×A***
19057876-CAAA-C 16945996-CAAA-C 13×A***
19500149-GGTAGA-CATAGG 17388269-GGTAGA-CATAGG ***
19631094-GTC-CTA 17519214-GTC-CTA P5_Prx ***
23127414-CAAAAAAAA-C 20965528-CAAAAAAAA-C 24×A***
19930476-CT-AA 17818596-CT-AA P5_Prx 22×T***
19948159-CTCCCTCCCTCCCTCCCTCCCTCCT-C 17836279-CTCCCTCCCTCCCTCCCTCCCTCCT-C P5_Prx ***
20035058-C-CAAAG 17923178-C-CAAAG P5_Prx ***
20793453-AATATAT-A 18631567-AATATAT-A P4_Prx 12×AT***
21177211-GTTT-G 19015325-GTTT-G 19×T***
21224779-ATTTTT-A 19062893-ATTTTT-A 19×T***
21355052-GAAAA-G 19193166-GAAAA-G 15×A***
22164567-GAC-AAA 20002681-GAC-AAA ***
22341346-TTG-ATT 20179460-TTG-ATT DYZ19 ***
22962414-GTTTT-G 20800528-GTTTT-G 20×T***
59007994-T-A 56861847-T-A ***
59007965-A-C 56861818-A-C ***
27497089-G-T 25350942-G-T P1_Y2 ***
28315823-G-C 26169676-G-C P1_b4 ***
28117322-G-A 25971175-G-A P1_b4 ***
28145169-T-G 25999022-T-G P1_b4 ***
28145176-A-G 25999029-A-G P1_b4 ***
28160815-G-T 26014668-G-T P1_b4 ***
28180690-C-A 26034543-C-A P1_b4 ***
28206168-C-A 26060021-C-A P1_b4 ***
28260266-T-A 26114119-T-A P1_b4 ***
28311279-A-G 26165132-A-G P1_b4 ***
28311284-G-C 26165137-G-C P1_b4 ***
28536197-C-A 26390050-C-A ***
28098065-G-T 25951918-G-T P1_Y2 ***
28608477-A-C 26462330-A-C ***
28655622-C-T 26509475-C-T ***
28655623-A-G 26509476-A-G ***
28655628-T-A 26509481-T-A ***
28661132-A-G 26514985-A-G ***
28661133-G-T 26514986-G-T ***
28661134-G-C 26514987-G-C ***
28661135-T-A 26514988-T-A ***
28661136-A-G 26514989-A-G ***
28103972-C-T 25957825-C-T P1_Y2 ***
28062547-A-C 25916400-A-C P1_Y2 ***
28707327-C-A 26561180-C-A ***
27761272-G-T 25615125-G-T P1_Y2 ***
27497096-G-T 25350949-G-T P1_Y2 ***
27499359-C-T 25353212-C-T P1_Y2 ***
27499365-T-A 25353218-T-A P1_Y2 ***
27499369-T-G 25353222-T-G P1_Y2 ***
27499376-C-A 25353229-C-A P1_Y2 ***
27569458-A-T 25423311-A-T P1_Y2 ***
27585894-C-T 25439747-C-T P1_Y2 ***
27644196-G-A 25498049-G-A P1_Y2 ***
27713496-G-T 25567349-G-T P1_Y2 ***
18838610-C-A 16726730-C-A ***
28033932-T-A 25887785-T-A P1_Y2 ***
27837948-C-T 25691801-C-T P1_Y2 ***
27861040-G-T 25714893-G-T P1_Y2 17×T***
27864336-G-A 25718189-G-A P1_Y2 ***
27873315-C-T 25727168-C-T P1_Y2 ***
27873319-C-T 25727172-C-T P1_Y2 ***
27896045-C-A 25749898-C-A P1_Y2 ***
27916474-C-A 25770327-C-A P1_Y2 ***
27918737-T-C 25772590-T-C P1_Y2 ***
27971764-C-A 25825617-C-A P1_Y2 ***
28031744-A-G 25885597-A-G P1_Y2 ***
28661143-C-A 26514996-C-A ***
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28804082-T-C 26657935-T-C ***
28804083-T-A 26657936-T-A ***
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18892544-T-C 16780664-T-C ***
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18836181-C-A 16724301-C-A ***
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7424498-G-T 7556457-G-T ***
7430013-C-A 7561972-C-A ***
7470348-T-C 7602307-T-C IR1_L ***
7501227-T-G 7633186-T-G IR1_L ***
7090475-C-A 7222434-C-A ***
6992474-C-A 7124433-C-A ***
7578274-C-T 7710233-C-T ***
6346425-A-C 6478384-A-C ***
5869595-C-T 6001554-C-T ***
5869596-T-C 6001555-T-C ***
5869599-C-A 6001558-C-A ***
5869600-T-A 6001559-T-A ***
5912096-G-T 6044055-G-T ***
6106082-G-A 6238041-G-A ***
6218541-T-C 6350500-T-C IR3_Dst ***
6234954-A-C 6366913-A-C IR3_Dst ***
6313768-C-A 6445727-C-A IR3_Dst ***
6359664-T-G 6491623-T-G ***
6978098-C-A 7110057-C-A ***
6399559-G-T 6531518-G-T ***
6748697-C-A 6880656-C-A ***
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6769105-T-A 6901064-T-A ***
6769108-T-A 6901067-T-A ***
6769110-T-C 6901069-T-C ***
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6862097-C-A 6994056-C-A ***
6915372-C-A 7047331-C-A ***
7542472-C-A 7674431-C-A ***
7579154-C-A 7711113-C-A ***
4968699-G-A 5100658-G-A ***
9345013-T-G 9507404-T-G ***
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9092623-C-A 9255014-C-A ***
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9325217-C-G 9487608-C-G ***
9325243-C-G 9487634-C-G ***
9325271-A-G 9487662-A-G ***
9334112-A-C 9496503-A-C ***
9345019-A-G 9507410-A-G ***
8840547-C-A 8972506-C-A ***
9351151-C-T 9513542-C-T 21×AT***
9371457-C-T 9533848-C-T 22×AT***
9465315-C-A 9627706-C-A ***
9507936-T-A 9670327-T-A ***
9507937-C-A 9670328-C-A ***
9507940-C-A 9670331-C-A ***
9507944-T-A 9670335-T-A ***
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9598197-G-A 9760588-G-A IR3_Prx ***
8865901-C-A 8997860-C-A ***
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7635857-C-G 7767816-C-G ***
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7646670-C-A 7778629-C-A ***
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7866823-T-G 7998782-T-G ***
7871550-C-A 8003509-C-A ***
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8153704-G-T 8285663-G-T ***
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8214426-C-A 8346385-C-A YP301 FGC11523 ***
8296167-C-A 8428126-C-A ***
8345948-C-A 8477907-C-A ***
8351575-C-A 8483534-C-A ***
8431719-C-A 8563678-C-A ***
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8774522-C-T 8906481-C-T ***
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5796327-C-A 5928286-C-A ***
4389402-G-C 4521361-G-C ***
9602652-C-T 9765043-C-T IR3_Prx ***
58974000-C-T 56827853-C-T ***
23761606-G-A 21599720-G-A ***
24311992-C-T 22165845-C-T P3_t1 ***
24891190-A-AT 22745043-A-AT g1 10×T***
25247673-C-T 23101526-C-T P2_r1 ***
27791947-T-TCTTCTG 25645800-T-TCTTCTG P1_Y2 ******
27792011-T-C 25645864-T-C P1_Y2 ***
58829480-ATTCCATTCCT-A 56761376-AGGAAAGGAAT-A ***
58973992-A-C 56827845-A-C ***
58973993-CTCGAT-G,T 56827846-CTCGAT-G,T ***
58980104-C-T 56833957-C-T ***
22252054-G-A 20090168-G-A DYZ19 ***
19892900-G-T 17781020-G-T P5_Prx ***
58982963-T-C 56836816-T-C ***
13480352-G-C 11324676-G-C ***
24300840-C-T 22154693-C-T P3_t1 ***
27078013-G-C 24931866-G-C P1_r4 24×AC***
17669700-C-CAT 15557820-C-CAT 15×AT***
26117897-G-A 23971750-G-A P1_Y1 ***
13452873-G-GCATTCCATTCCATTC 11297197-G-GCATTCCATTCCATTC 14×CATTC***
9921530-G-T 10083921-G-T ***
22278853-T-C 20116967-T-C DYZ19 ***
20741994-A-T 18580108-A-T P4_Prx ***
19663063-T-G 17551183-T-G P5_Prx ***
13694102-A-C 11538426-A-C 4×AATGG***
58973986-C-T 56827839-C-T ***
58976182-C-T 56830035-C-T ***
8702810-GTTT-G 8834769-GTTT-G 21×T***
13805245-G-T 11684539-G-T ***
5644813-GTA-G 5776772-GTA-G ***
6246714-C-CT 6378673-C-CT IR3_Dst 11×T***
6878073-C-A 7010032-C-A 17×A***
13453401-TTCCTA-T,TTCCAT 11297725-TTCCTA-T,TTCCAT ***
13676638-A-T 11520962-A-T ***
13717060-AGAACGGACTG-A 11561384-AGAACGGACTG-A ***
19857591-AT-A,AA 17745711-AT-A,AA P5_Prx ***
13748530-A-G 11592854-A-G ***
13821177-AGGAATGGAAT-A 11700471-AGGAATGGAAT-A 10×GGAAT***
13832506-AGGAAT-A,T 11711800-AGGAAT-A,T 12×GGAAT***
13869414-G-C 11748708-G-C ***
13869424-G-A 11748718-G-A ***
13869433-T-TGGATCGTTATGGAAA 11748727-T-TGGATCGTTATGGAAA ***
16118570-A-ATTT 14006690-A-ATTT P8_Prx 31×T******
19346426-T-C 17234546-T-C ***
19346427-C-T 17234547-C-T ***
19682174-C-CAAAA 17570294-C-CAAAA P5_Prx 30×A******
13541293-AT-A 11385617-AT-A ***
58979225-TTCT-CTCC 56833078-TTCT-CTCC ***
4389393-T-A 4521352-T-A ***
10073221-G-A 10235612-G-A ***
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9577012-C-A 9739403-C-A IR3_Prx ***
26153980-T-G 24007833-T-G P1_Y1 ***
22469572-G-T 20307686-G-T DYZ19 ***
58983142-C-G 56836995-C-G ***
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3436193-C-A 3568152-C-A ***
4107586-T-C 4239545-T-C ***
4388468-T-C 4520427-T-C ***
58970195-GTTC-G 56824048-GTTC-G ***
13853698-G-A 11732992-G-A Z19599 ***
21953533-A-T 19791647-A-T ***
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9639094-T-TTG 9801485-T-TTG IR3_Prx 19×TG***
13541288-G-A 11385612-G-A ***
14339106-C-T 12218401-C-T 19×T***
19272161-G-A 17160281-G-A S22037 ***
23429908-C-A 21268022-C-A 13×A***
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18792839-G-C 16680959-G-C ***
15767033-T-A 13655153-T-A ***
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15081705-T-G 12969795-T-G ***
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13722958-G-A 11567282-G-A ***
13729152-T-C 11573476-T-C ***
13731757-G-A 11576081-G-A ***
13799006-G-T 11678300-G-T ***
25221549-C-CT,T 23075402-C-CT,T P2_r1 19×T***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Uncertain Mutations

NGS tests don't always cover all of the Y chromosome and, even when they do, the results can be inconclusive. The following mutations don't have clear results and have been assumed to be positive or negative. For those mutations that are assumed to be positive, the assumed SNP/INDEL will likely be found on the tree in some upstream block. It is unclear if it should be placed upstream of your results or parallel to them. The situation is reversed for mutations assumed negative. Those SNPs/INDELs will likely be found on a parallel branch on the tree, and it is unclear if they should be positioned upstream. As more results come in, the ambiguity may resolve itself, or it may be necessary to consult the BAM file for your test (available from FamilyTreeDNA or FullGenomes Corp) or by direct SNP testing (Sanger Sequencing - YSEQ or FamilyTreeDNA).

SNPs/INDELs:

BlockRegionPOS-REF-ALT (hg19)POS-REF-ALT (hg38)NamesNotes
20 16392854-C-T 14280974-C-T BY12434 Uncertain, but assumed positive.
20 17362444-C-T 15250564-C-T FGC13741 Uncertain, but assumed positive.

Haplotype Progression

The data below reveals the progression of changes in the haplotype. The bottom row is the haplotype for this man and above him are the inferred ancestral haplotypes for various upstream blocks. These inferred haplotypes are very much a work in progress, and any suggested modifications are appreciated. I think we can use our vast collection of haplotype data to refine these haplotypes. Mutations made from each upstream block are shown in sequence. The cell color is determined by the block in which the mutation took place.

DYS393
DYS390
DYS19
DYS391
DYS385
DYS426
DYS388
DYS439
DYS389i
DYS392
DYS389ii
DYS458
DYS459
DYS455
DYS454
DYS447
DYS437
DYS448
DYS449
DYS464
DYS460
Y-GATA-H4
YCAII
DYS456
DYS607
DYS576
DYS570
CDY
DYS442
DYS438
DYS531
DYS578
DYF395S1
DYS590
DYS537
DYS641
DYS472
DYF406S1
DYS511
DYS425
DYS413
DYS557
DYS594
DYS436
DYS490
DYS534
DYS450
DYS444
DYS481
DYS520
DYS446
DYS617
DYS568
DYS487
DYS572
DYS640
DYS492
DYS565
DYS710
DYS485
DYS632
DYS495
DYS540
DYS714
DYS716
DYS717
DYS505
DYS556
DYS549
DYS589
DYS522
DYS494
DYS533
DYS636
DYS575
DYS638
DYS462
DYS452
DYS445
Y-GATA-A10
DYS463
DYS441
Y-GGAAT-1B07
DYS525
DYS712
DYS593
DYS650
DYS532
DYS715
DYS504
DYS513
DYS561
DYS552
DYS726
DYS635
DYS587
DYS643
DYS497
DYS510
DYS434
DYS461
DYS435
P312/S1161324141111-14121212131329179-1011112515192915-15-17-17111119-231615181736-38121211915-1681010810101223-231610121215812222013121113111112123315916122626191211131210912121011113012132413101020151913241712152412231810141791211
L21/S1451324141111-14121212131329179-1011112515192915-15-17-17111119-231615181736-38121211915-1681010810101223-231610121215812222013121113111112123515916122526191211131211912121011113012132413101020151913241712152412231810141791211
Posey1324141111-14121212131229179-911112515193115-15-17-17121019-231515201837-38121211915-1681010811111223-231610121216812222013121113111112123315916122626191211131211913121011113012122413101019151913241712152512231810141791111

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 2752231000635772585377332374
Used in age calculations1000635772585377332374
Counts of SNPs76
Variant counts last updated 2017-11-13 20:41:44.



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