Tree Position

A0-T-YP2191 > P305[A1] > A1b > BT/A1b2 > M168/PF1416[CT] > P143[CF] > M89/PF2746[F] > F1329/M3658[GHI > M201/PF2957[G] > Exact position not yet finalized.

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STR1kG
HG02789
13384620-C-T 11228944-C-T FGC13898FGC13898 +
8455657-G-A 8587616-G-A PF5721PF5721 YY+
7862721-C-T 7994680-C-T FGC32369 Z31479 Y12929 YY+
22901129-A-T 20739243-A-T M3208 YY+
13880605-C-T 11759899-C-T FGC32392 Y12295 Y+
2661236-C-T 2793195-C-T Y12288 FGC7837 SK1172 YY+
2701380-A-C 2833339-A-C M3100 YY+
2707716-G-T 2839675-G-T M3101 YY+
2976942-T-A 3108901-T-A FGC7840 Z8015 +
3132549-C-A 3264508-C-A +
3544256-C-G 3676215-C-G FT568 +
3778513-C-A 3910472-C-A FT318461 +
4066788-A-G 4198747-A-G FGC55667 +
4262001-T-G 4393960-T-G Y12913 +
4404630-C-T 4536589-C-T FGC55681 +
4491960-G-A 4623919-G-A FGC7839 Z8016 +
4607414-G-A 4739373-G-A FT307288 +
4644018-T-G 4775977-T-G FGC55684 +
4724124-T-C 4856083-T-C FGC55659 +
4874338-G-A 5006297-G-A Y12289 +
4943744-A-G 5075703-A-G Z8017 FGC7835 +
4948666-A-G 5080625-A-G FGC55664 +
4999035-G-A 5130994-G-A FT1048 +
5109061-T-G 5241020-T-G FGC55683 +
5360974-T-A 5492933-T-A FGC55679 +
5362126-T-C 5494085-T-C FGC55665 +
5571466-A-G 5703425-A-G FGC55671 +
5772750-A-T 5904709-A-T FGC55677 +
6608678-C-T 6740637-C-T FGC55668 +
6610792-T-C 6742751-T-C FGC55678 +
6634249-C-T 6766208-C-T M3104 YY+
6752444-C-T 6884403-C-T FT8315 YY+
6848350-C-T 6980309-C-T M3105 YY+
6930974-C-T 7062933-C-T M3106 YY+
6934812-A-G 7066771-A-G Y12290 FGC32429 YY+
7034574-T-C 7166533-T-C FT327124 YY+
7049757-C-A 7181716-C-A M3107 YY+
7060651-C-T 7192610-C-T M3108 Y+
7078146-C-G 7210105-C-G M3109 YY+
7134340-T-C 7266299-T-C M3111 Y+
7158318-C-T 7290277-C-T M3642 YY+
7246792-C-T 7378751-C-T M3112 YY+
7264729-A-G 7396688-A-G M3113 YY+
7271477-C-G 7403436-C-G M3114 YY+
7322981-G-T 7454940-G-T M3115 YY+
7330625-G-A 7462584-G-A M3116 YY+
7552621-G-C 7684580-G-C M3117 YY+
7614629-A-C 7746588-A-C Y12914 FGC32385 YY+
7681636-C-G 7813595-C-G M3119 YY+
7762172-G-A 7894131-G-A YY+
7918570-C-T 8050529-C-T M3122 YY+
7938066-C-T 8070025-C-T M3123 YY+
7956864-G-T 8088823-G-T M3124 YY+
7975012-T-A 8106971-T-A YY+
8090420-A-T 8222379-A-T Y12291 FGC32377 YY+
8321328-T-C 8453287-T-C M3125 YY+
8362124-C-A 8494083-C-A Y12292 FGC32389 BY794 YY+
8371771-G-T 8503730-G-T M3128 YY+
8526343-C-T 8658302-C-T SK1170 YY+
8528374-G-C 8660333-G-C FT307661 YY+
8583848-C-T 8715807-C-T S7520 YY+
8625892-A-G 8757851-A-G M3129 YY+
8653573-C-G 8785532-C-G M3130 YY+
8709740-G-A 8841699-G-A FT307663 YY+
8868061-G-T 9000020-G-T M3132 S7541 Y+
9136262-T-C 9298653-T-C Y+
9410456-G-A 9572847-G-A M3134 Y+
9417819-C-T 9580210-C-T Y12293 BY900 YY+
9456102-C-T 9618493-C-T M3135 YY+
9514850-G-A 9677241-G-A FGC55682 +
9785430-T-A 9947821-T-A Y11×A+
9884634-A-G 10047025-A-G M3136 YY+
9892172-T-C 10054563-T-C Y12918 BY928 YY+
9953619-C-T 10116010-C-T BY930 Y+
10028155-C-T 10190546-C-T FT80287 Y+
10033561-G-T 10195952-G-T BY4678FGC32428 Y+
13253210-T-C 11097534-T-C +
13366849-A-G 11211173-A-G +
13456970-G-A 11301294-G-A Z35313 +
13494181-A-T 11338505-A-T FT80276 +
13495459-A-C 11339783-A-C FT80277 +
13509986-G-T 11354310-G-T BY960 +
13514450-T-A 11358774-T-A FT80279 +
13540604-A-T 11384928-A-T FT80275 +
13543778-G-C 11388102-G-C FGC80507 +
13607046-T-C 11451370-T-C FGC55657 +
13616971-C-T 11461295-C-T +
13636078-T-C 11480402-T-C FGC55676 +
13653765-G-A 11498089-G-A FGC32372 BY973 +
13672927-T-C 11517251-T-C FGC32388 BY988 +
13681109-T-G 11525433-T-G FGC32373 +
13799778-C-G 11679072-C-G +
13815032-C-T 11694326-C-T FT307714 +
13823855-C-T 11703149-C-T S3577 +
13849720-C-T 11729014-C-T Y12294 FGC32378 +
13862455-G-T 11741749-G-T FT307735 +
13950384-C-A 11829678-C-A M3138 Y+
14011700-A-G 11890994-A-G M3139 Y+
14060086-C-G 11939380-C-G M3140 YY+
14195507-C-T 12074801-C-T M3141 Y+
14238168-G-A 12117462-G-A M3142 YY+
14302515-A-G 12181809-A-G M3143 Y+
14374565-G-A 12253861-G-A Y12296 FGC32383 YY+
14418718-G-A 12297993-G-A Y12297 BY1090 YY+
14552166-A-C 12440367-A-C M3144 YY+
14656379-G-C 12544444-G-C Y12298 BY1109 YY+
14709383-C-T 12597450-C-T YY+
14745812-C-T 12633881-C-T FT307759 YY+
14894401-A-G 12782467-A-G M3145 YY+
14896655-A-G 12784721-A-G M3146 YY+
14936539-C-G 12824604-C-G M3147 YY+
14978796-T-A 12866872-T-A M3148 YY+
15008352-A-C 12896437-A-C M3149 YY+
15031385-A-G 12919473-A-G M283 YY+
15079273-C-T 12967363-C-T Y67704 YY+
15102439-C-T 12990527-C-T Y14599 Y+
15243482-C-T 13131568-C-T Y+
15288689-T-C 13176788-T-C Y+
15327403-G-A 13215521-G-A M3150 YY+
15357278-C-T 13245397-C-T Y12927 FGC32376 BY1172 YY+
15421572-A-G 13309692-A-G M3151 YY+
15426063-C-A 13314183-C-A YY+
15531854-A-G 13419974-A-G S7535 M3153 YY+
15552076-A-C 13440196-A-C M3154 YY+
15577988-A-G 13466108-A-G M3155 YY+
15614055-C-A 13502175-C-A FT307772 YY+
15623115-C-T 13511235-C-T S7524 YY+
15731802-G-C 13619922-G-C M3156 YY+
15748155-C-T 13636275-C-T M3157 YY+
15793624-C-T 13681744-C-T M3158 Y+
15841890-C-T 13730010-C-T M3159 YY+
15968360-G-A 13856480-G-A M3160 YY+
16064108-C-A 13952228-C-A M3161 Y+
16073132-G-A 13961252-G-A FT329859 Y+
16330843-G-A 14218963-G-A M3162 YY+
16430852-A-C 14318972-A-C FGC55669 YY+
16435550-A-G 14323670-A-G M3164 YY+
16561117-T-A 14449237-T-A M3165 YY+
16891681-C-T 14779801-C-T Y12299 FGC32384 YY+
16946687-A-G 14834807-A-G Y12300 SK1168 YY+
16972984-A-G 14861104-A-G M3167 Y+
17009992-A-C 14898112-A-C Y12923 SK1169 YY+
17074441-C-T 14962561-C-T M3170 YY+
17083744-T-C 14971864-T-C M3171 Y+
17260550-C-T 15148670-C-T M3172 Y+
17339157-G-A 15227277-G-A Y12924 FGC32379 YY+
17422688-C-T 15310808-C-T M3173 YY+
17771443-C-T 15659563-C-T M3175 YY+
17837686-G-A 15725806-G-A Y+
17862980-G-T 15751100-G-T FT330600 YY+
18045777-T-C 15933897-T-C M3177 YY+
18111262-T-G 15999382-T-G M3178 YY+
18147236-G-A 16035356-G-A M3180 YY+
18386685-G-C 16274805-G-C FT307819 P6_Gap +
18406556-C-T 16294676-C-T Y12302 FGC32380 P6_Gap +
18550969-A-C 16439089-A-C Y12303 FGC2909 Y+
18610798-T-C 16498918-T-C FT330920 YY+
18750052-G-T 16638172-G-T FGC7834 Z8019 Y+
18943784-C-T 16831904-C-T M3182 YY+
18969005-C-T 16857125-C-T M3183 Y+
19084194-C-T 16972314-C-T FGC55680 Y+
19107202-A-T 16995322-A-T Y12304 FGC32381 BY1502 YY+
19141245-C-A 17029365-C-A M3184 YY+
19196316-T-C 17084436-T-C Y12917 FGC32371 BY1511 YY+
19297686-G-T 17185806-G-T FGC55662 Y+
19332228-C-G 17220348-C-G M3185 YY+
19505282-T-C 17393402-T-C Y12305 YY+
19506702-T-G 17394822-T-G FT331348 YY+
21143496-T-C 18981610-T-C Y12306 FGC32375 YY+
21157872-C-T 18995986-C-T Y12307 SK1171 Y+
21248555-T-C 19086669-T-C M3187 YY+
21290710-A-G 19128824-A-G M3188 YY+
21316307-T-G 19154421-T-G Y12308 FGC32387 BY1740 YY+
21328577-T-C 19166691-T-C Y12309 FGC32394 YY+
21404903-C-T 19243017-C-T M3190 YY+
21480778-G-A 19318892-G-A M3191 YY+
21483139-C-T 19321253-C-T M3192 YY+
21562717-T-A 19400831-T-A FTA6208 YY+
21606687-T-C 19444801-T-C M3194 YY+
21768826-A-C 19606940-A-C Y12310 FGC32390 YY+
21780912-A-G 19619026-A-G FT331728 YY+
21799648-C-T 19637762-C-T M3195 YY+
21820771-G-A 19658885-G-A FT331763 Y+
21839695-C-T 19677809-C-T FTA6221 Y+
21912838-G-A 19750952-G-A M3196 Y+
21950193-G-A 19788307-G-A M3197 YY+
21992731-T-C 19830845-T-C M3198 YY+
22015400-C-A 19853514-C-A M3199 Y+
22064715-C-T 19902829-C-T M3200 Y+
22107729-A-G 19945843-A-G M3201 YY+
22174429-G-A 20012543-G-A Y12928 BY1821 YY+
22298187-A-G 20136301-A-G FGC32386 DYZ19 +
22362204-A-C 20200318-A-C BY217695 DYZ19 +
22472600-C-T 20310714-C-T FGC32374 BY2044 DYZ19 +
22489092-T-G 20327206-T-G DYZ19 +
22534094-G-C 20372208-G-C FTB18190 Y+
22553237-A-G 20391351-A-G M3203 YY+
22566533-T-C 20404647-T-C YY+
22766998-A-G 20605112-A-G Y12311 BY2086 YY+
22788846-G-A 20626960-G-A M3205 YY+
22883627-G-C 20721741-G-C M3207 Y+
23077854-A-G 20915968-A-G M3210 Y+
23187821-G-A 21025935-G-A Y12930 Z8020 FGC7836 Y+
23192445-T-C 21030559-T-C FGC55675 Y+
23243887-G-C 21082001-G-C S315 L72 YY+
23247088-A-G 21085202-A-G Y12312 BY2139 YY+
23262062-C-T 21100176-C-T M3212 YY+
23303011-G-C 21141125-G-C S7536 YY+
23316156-A-G 21154270-A-G Y12926 FGC32391 YY+
23364100-A-G 21202214-A-G Z8021 Y+
23405943-G-C 21244057-G-C M3215 YY+
23467992-C-G 21306106-C-G M3216 YY+
23480651-A-C 21318765-A-C Y12313 FGC32370 BY2159 YY+
23835130-G-A 21673244-G-A M3218 Y+
23860092-A-C 21698206-A-C M3219 Y+
23990820-G-T 21844673-G-T M3220 Y+
24505021-T-C 22358874-T-C Y12314 BY2282 +
24553406-C-G 22407259-C-G P3_t2 +
28599719-G-T 26453572-G-T FGC55658 +
28666060-G-T 26519913-G-T M3221 +
28686219-T-A 26540072-T-A FGC55660 +
28686956-G-A 26540809-G-A M3222 +
28736268-G-A 26590121-G-A FGC55663 +
28744734-T-G 26598587-T-G M3223 +
28771017-G-A 26624870-G-A S7538 +
28790165-T-A 26644018-T-A +
28805013-G-A 26658866-G-A +

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.