Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > ZZ10 > BY4047 > BY4050

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
204709
BigY2
204709
25881121-C-A 23734974-C-A P1_Y1 ***A*
2846627-A-AT 2978586-A-AT 12×TA*
9774615-A-G 9937006-A-G YA*
19834756-G-A 17722876-G-A Z375 P5_Prx ***A*
28816617-T-C 26670470-T-C A*
28817027-G-C 26670880-G-C A*
16255233-A-C 14143353-A-C BY19445 YY++
13703727-G-A 11548051-G-A ***+
18391277-T-A 16279397-T-A BY19448 P6_Gap ++
27719967-C-T 25573820-C-T P1_Y2 **+
17937807-A-G 15825927-A-G BY19447 YY++
17794587-A-G 15682707-A-G BY19446 YY++
17788984-A-G 15677104-A-G YY++
15724728-CAG-C 13612848-CAG-C ++
22274584-T-A 20112698-T-A BY24415 DYZ19 +
14710661-A-G 12598728-A-G YY++
13688940-G-C 11533264-G-C +
22362360-C-T 20200474-C-T BY24441 DYZ19 +**
22420156-C-A 20258270-C-A DYZ19 +
20489575-TTA-T 18327689-TTA-T P5_Dst +
22829899-C-T 20668013-C-T BY19453 YY++
23056626-G-A 20894740-G-A BY19454 YY++
23193354-T-A 21031468-T-A Y9×A++
22340245-T-C 20178359-T-C DYZ19 ++
21811230-G-A 19649344-G-A S23590 YY++
9834162-G-A 9996553-G-A BY19444 YY++
21260902-T-A 19099016-T-A YY++
22312714-A-T 20150828-A-T DYZ19 ++
19346376-TTTC-T 17234496-TTTC-T +
14213672-G-GA 12092966-G-GA +
21547103-G-A 19385217-G-A BY19452 YY++
21342470-C-T 19180584-C-T BY19451 YY++
19109146-G-A 16997266-G-A BY19449 YY++
2658228-T-A 2790187-T-A BY19442 YY++
21155953-G-A 18994067-G-A BY19450 Y++
8146128-A-T 8278087-A-T YY++
8484764-A-G 8616723-A-G YY++
2766266-G-A 2898225-G-A BY19443 YY++
21451442-G-GTA 19289556-G-GTA 8×TA*
10963565-G-T **
10943588-C-A **
11035413-A-T **
11035398-ACTTCA-G **
11035359-C-CTT **
10957956-CCATTCCACTCCTCTCCCCTCCACTCTACTACACTCCACTCCACCCCACTT-C **
11035353-ATT-A **
10989171-C-A **
10975142-TC-T **
10981198-C-T **
11035338-A-G **
11022638-A-AC **
10996766-T-G **
11010004-A-G **
11020822-C-A **
11020122-A-G **
11000345-C-A **
13291491-C-A 11135815-C-A **
13198665-C-A 11042989-C-A **
11651393-A-C **
13593268-C-G 11437592-C-G **
13624093-C-A 11468417-C-A **
13720636-C-A 11564960-C-A **
11643971-A-G **
11646077-C-A **
11647199-A-G **
11648834-C-A **
11651331-G-T **
11672173-G-T **
13571961-G-T 11416285-G-T **
13846713-G-A 11726007-G-A **
13870694-C-A 11749988-C-A **
13895032-T-G 11774326-T-G **
13952425-C-A 11831719-C-A **
14100346-C-A 11979640-C-A **
14146932-G-A 12026226-G-A **
14187137-C-T 12066431-C-T **
14195088-C-T 12074382-C-T **
13585313-A-G 11429637-A-G **
13494120-C-A 11338444-C-A **
13200484-G-A 11044808-G-A **
13337998-C-G 11182322-C-G **
13216646-T-C 11060970-T-C **
13227096-C-A 11071420-C-A **
13227211-C-A 11071535-C-A **
13337968-T-A 11182292-T-A **
13337975-C-A 11182299-C-A **
13337976-T-A 11182300-T-A **
13337977-A-C 11182301-A-C **
13337988-C-A 11182312-C-A **
13337999-C-T 11182323-C-T **
13429653-C-A 11273977-C-A **
13338002-C-T 11182326-C-T **
13338005-T-G 11182329-T-G **
13338007-C-G 11182331-C-G **
13338016-C-T 11182340-C-T **
13338019-C-G 11182343-C-G **
13338029-T-C 11182353-T-C **
13357015-T-C 11201339-T-C **
13361574-T-C 11205898-T-C **
10943578-G-A **
56851437-G-C **
10925723-C-A **
9931519-C-G 10093910-C-G **
8697948-C-A 8829907-C-A **
8699322-A-G 8831281-A-G **
8816523-C-T 8948482-C-T **
8912885-C-A 9044844-C-A **
9408821-A-G 9571212-A-G **
9908539-G-A 10070930-G-A **
9931523-TG-T 10093914-TG-T **
8112455-C-T 8244414-C-T **
9936317-C-A 10098708-C-A **
9965950-C-A 10128341-C-A **
9971374-C-A 10133765-C-A **
9977405-C-A 10139796-C-A **
9997974-T-C 10160365-T-C **
10023138-C-A 10185529-C-A **
10026811-G-C 10189202-G-C **
8279806-C-T 8411765-C-T **
8077957-G-T 8209916-G-T **
10632601-A-T **
7085375-C-A 7217334-C-A **
6699047-T-A 6831006-T-A **
6728974-CA-C 6860933-CA-C **
6787152-C-A 6919111-C-A **
6983871-A-G 7115830-A-G **
6998075-T-C 7130034-T-C **
7040845-G-T 7172804-G-T **
7210017-G-A 7341976-G-A **
7984571-C-A 8116530-C-A **
7217387-T-C 7349346-T-C **
7241014-C-A 7372973-C-A **
7254668-T-C 7386627-T-C **
7263783-C-A 7395742-C-A **
7304411-A-C 7436370-A-C **
7664391-A-T 7796350-A-T **
7917180-C-A 8049139-C-A **
10631426-C-A **
10661493-T-A **
10925428-C-A **
10841795-T-A **
10803543-C-T **
10803546-T-C **
10805310-C-A **
10806239-C-A **
10813993-C-A **
10819001-C-A **
10851529-A-G **
10803527-AC-A **
10882596-C-T **
10884269-C-A **
10898400-C-A **
10911360-A-G **
10912969-G-C **
10912974-A-G **
10912977-A-G **
10803538-C-T **
10803518-C-T **
10667718-T-C **
10777076-C-A **
10684676-G-T **
10686013-A-G **
10689935-C-A **
10689954-C-A **
10693373-CCACAG-C **
10771893-CA-C **
10778368-C-A **
10803517-T-A **
10780026-C-A **
10790928-C-T **
10796584-GTCTAA-G **
10796597-T-TGAAGG **
10796604-A-AT **
10796608-TA-T **
10799694-C-A **
14212112-A-T 12091406-A-T **
15126171-TC-T 13014258-TC-T **
14224313-T-C 12103607-T-C **
21427584-C-A 19265698-C-A **
23005506-C-A 20843620-C-A **
22833811-C-A 20671925-C-A **
22797894-T-G 20636008-T-G **
22284014-G-C 20122128-G-C DYZ19 **
22173368-C-A 20011482-C-A **
22172291-G-T 20010405-G-T **
22076053-G-A 19914167-G-A **
22060296-C-A 19898410-C-A **
22055387-C-A 19893501-C-A **
22051994-C-A 19890108-C-A **
21979976-C-A 19818090-C-A **
21966062-C-T 19804176-C-T **
21902095-T-A 19740209-T-A **
21832914-T-C 19671028-T-C **
21402222-C-A 19240336-C-A **
23261547-C-A 21099661-C-A **
21220240-CTTTTTTT-C 19058354-CTTTTTTT-C 19×T**
21219725-T-C 19057839-T-C **
21153825-T-A 18991939-T-A **
21153467-G-A 18991581-G-A **
21133554-C-T 18971668-C-T **
20526320-T-TC 18364434-T-TC P5_Dst **
20454012-G-T 18292126-G-T P5_Dst **
20143453-T-C 18031573-T-C P5_Dst **
19720838-C-T 17608958-C-T P5_Prx **
19537901-C-CAAA 17426021-C-CAAA 17×A**
19509994-T-C 17398114-T-C **
19459523-C-A 17347643-C-A **
19459293-C-A 17347413-C-A **
19329787-G-T 17217907-G-T **
23210272-C-A 21048386-C-A **
23285215-C-A 21123329-C-A **
19172894-G-A 17061014-G-A **
26514955-A-AAATC 24368808-A-AAATC P1_Y1 **
56847479-T-C **
28762605-T-C 26616458-T-C **
28730827-C-A 26584680-C-A **
28722448-AAC-A 26576301-AAC-A **
28719367-C-T 26573220-C-T **
28706237-T-A 26560090-T-A **
28700599-C-A 26554452-C-A **
28646000-C-A 26499853-C-A **
28558174-T-A 26412027-T-A Y36711 **
28503853-C-A 26357706-C-A **
28492057-T-A 26345910-T-A **
28484874-C-A 26338727-C-A **
28482535-C-A 26336388-C-A **
26834440-C-A 24688293-C-A P1_g2 **
26514951-A-G 24368804-A-G P1_Y1 **
23338315-T-G 21176429-T-G **
23898748-T-C 21736862-T-C **
23341867-C-A 21179981-C-A **
23419232-A-G 21257346-A-G **
23802052-C-T 21640166-C-T **
23802222-C-A 21640336-C-A **
23818698-C-A 21656812-C-A **
23881923-G-T 21720037-G-T **
21750890-G-T **
26514946-C-CAT 24368799-C-CAT P1_Y1 **
24403528-T-C 22257381-T-C **
24446940-A-G 22300793-A-G **
24672702-C-A 22526555-C-A P3_b2 **
26146723-C-A 24000576-C-A P1_Y1 **
26358803-C-A 24212656-C-A P1_Y1 **
26514936-C-T 24368789-C-T P1_Y1 **
19246777-C-A 17134897-C-A **
19168711-A-G 17056831-A-G **
14227637-C-G 12106931-C-G **
15278870-C-A 13166969-C-A **
16075204-C-A 13963324-C-A **
16048360-T-C 13936480-T-C **
16033547-C-A 13921667-C-A **
16028735-C-A 13916855-C-A **
16017495-C-A 13905615-C-A **
16007176-C-T 13895296-C-T **
15995421-C-A 13883541-C-A **
15971477-C-A 13859597-C-A **
15944189-A-T 13832309-A-T **
15940297-A-G 13828417-A-G **
15803841-A-C 13691961-A-C **
15797976-TA-T 13686096-TA-T **
15622434-TA-T 13510554-TA-T **
15400111-C-A 13288231-C-A **
6490868-C-A 6622827-C-A **
16241572-G-A 14129692-G-A **
14458033-C-A 12337306-C-A **
14261446-C-A 12140740-C-A **
14272183-C-A 12151477-C-A **
14284682-C-T 12163976-C-T **
14344923-C-A 12224218-C-A **
14431332-C-A 12310605-C-A **
14431561-C-A 12310834-C-A **
14501368-C-A 12389573-C-A **
14788098-T-A 12676169-T-A **
14517617-A-G 12405818-A-G **
14549724-C-T 12437925-C-T **
14557170-T-C 12445371-T-C **
14557341-C-A 12445542-C-A **
14605699-C-A 12493901-C-A **
14639103-C-T 12527172-C-T **
16240911-C-A 14129031-C-A **
16424642-G-A 14312762-G-A **
19146503-C-A 17034623-C-A **
17716966-C-A 15605086-C-A **
19129473-A-T 17017593-A-T **
18980459-T-C 16868579-T-C **
18928708-C-A 16816828-C-A **
18915217-C-A 16803337-C-A **
18825622-C-A 16713742-C-A **
18794899-T-C 16683019-T-C **
18750236-G-T 16638356-G-T Y102583 **
18702744-C-A 16590864-C-A **
18650511-C-A 16538631-C-A **
18621605-C-A 16509725-C-A **
17886406-G-A 15774526-G-A **
17825820-C-A 15713940-C-A **
17782639-G-T 15670759-G-T **
17737907-AG-A 15626027-AG-A **
17544967-C-A 15433087-C-A **
16540948-C-A 14429068-C-A **
17027019-T-C 14915139-T-C **
16621401-G-T 14509521-G-T **
16743095-T-A 14631215-T-A **
16743101-C-T 14631221-C-T **
16816686-T-C 14704806-T-C Y29044 **
16938208-TCTTTC-T 14826328-TCTTTC-T **
17027015-A-C 14915135-A-C **
17030628-C-A 14918748-C-A **
17486004-A-G 15374124-A-G **
17063783-C-A 14951903-C-A **
17088602-C-A 14976722-C-A **
17374042-C-A 15262162-C-A **
17374236-G-T 15262356-G-T **
17382389-T-G 15270509-T-G **
17452635-G-T 15340755-G-T **
6576409-T-G 6708368-T-G **
6468288-G-C 6600247-G-C **
6983745-C-A 7115704-C-A **
11013304-C-A **
15804111-C-A 13692231-C-A **
15946671-C-A 13834791-C-A **
27908263-T-TA 25762116-T-TA P1_Y2 **
19055589-G-T 16943709-G-T **
24278334-AGGAAG-A 22132187-AGGAAG-A P3_b1 **
7108414-C-A 7240373-C-A **
4567085-C-A 4699044-C-A **
13859730-G-T 11739024-G-T **
3011496-A-G 3143455-A-G **
10889790-C-CGTAAA **
10889769-C-T **
13884202-C-A 11763496-C-A **
11021556-C-A **
15276721-C-A 13164810-C-A **
18465590-G-T 16353710-G-T P6_Dst **
5246608-C-A 5378567-C-A **
7360608-C-A 7492567-C-A **
4241682-C-A 4373641-C-A **
10771899-A-AG **
3533791-A-G 3665750-A-G **
11035383-A-G **
10796582-A-T **
16942081-C-A 14830201-C-A **
24446852-A-AAT 22300705-A-AAT 15×AT**
5523201-C-A 5655160-C-A **
11645967-G-T **
11653424-C-A **
22205021-G-T 20043135-G-T **
13887416-G-GTT 11766710-G-GTT 10×T**
16058977-C-A 13947097-C-A **
4415134-ATC-A 4547093-ATC-A **
22535953-A-G 20374067-A-G **
5911934-C-A 6043893-C-A **
9952126-C-A 10114517-C-A **
6728996-C-CA 6860955-C-CA 9×A**
3074809-C-A 3206768-C-A **
21629549-T-C 19467663-T-C **
20489576-TA-T 18327690-TA-T P5_Dst **
13708889-G-C 11553213-G-C **
10877668-C-T **
10877631-A-T **
11021178-G-T **
15218717-C-A 13106803-C-A **
5242773-C-A 5374732-C-A **
14196214-C-A 12075508-C-A **
10975168-C-A **
6465580-C-A 6597539-C-A **
58883525-C-A 56707346-G-T **
23202818-G-T 21040932-G-T **
20489572-AT-A 18327686-AT-A P5_Dst **
13526358-C-T 11370682-C-T FGC17964 ****
22420108-A-C 20258222-A-C BY27822 DYZ19 **
28707475-C-A 26561328-C-A **
5003848-C-A 5135807-C-A **
10877670-T-C **
11025267-G-A **
15997442-C-A 13885562-C-A **
10877674-A-C **
7186756-C-A 7318715-C-A **
14180848-C-A 12060142-C-A **
18190168-C-A 16078288-C-A **
17597957-C-A 15486077-C-A **
10812499-C-A **
4244891-C-A 4376850-C-A **
10828266-C-A **
10877662-A-AC **
17682624-T-C 15570744-T-C **
10877660-T-TTCTA **
10981160-C-A **
19509989-A-C 17398109-A-C **
20751848-T-C 18589962-T-C P4_Prx **
5087363-T-TC 5219322-T-TC 9×C**
15684319-C-A 13572439-C-A **
13445376-AAG-A 11289700-AAG-A **
4124109-C-A 4256068-C-A **
7208286-C-A 7340245-C-A **
4630189-A-G 4762148-A-G **
4866794-G-C 4998753-G-C **
5200975-G-T 5332934-G-T **
5138678-G-A 5270637-G-A **
5125479-C-A 5257438-C-A **
5087414-A-G 5219373-A-G **
5080194-C-A 5212153-C-A **
5004236-G-T 5136195-G-T **
4930256-G-T 5062215-G-T **
4863523-G-T 4995482-G-T **
5415686-G-T 5547645-G-T **
4863489-A-T 4995448-A-T **
4784061-A-C 4916020-A-C **
4709171-G-T 4841130-G-T **
4630209-A-G 4762168-A-G **
4630199-GTGTT-G 4762158-GTGTT-G **
4560908-A-G 4692867-A-G **
4469959-C-A 4601918-C-A **
4287893-G-A 4419852-G-A **
5221321-A-C 5353280-A-C **
5627604-C-A 5759563-C-A **
3987841-T-C 4119800-T-C **
6001683-T-C 6133642-T-C **
6460046-C-A 6592005-C-A **
6454697-C-A 6586656-C-A **
6447496-T-G 6579455-T-G **
6440991-TAAA-T 6572950-TAAA-T 19×A**
6423938-C-A 6555897-C-A **
6284850-A-AT 6416809-A-AT IR3_Dst **
6034041-A-G 6166000-A-G **
5935112-C-A 6067071-C-A **
5635215-C-A 5767174-C-A **
5867133-C-A 5999092-C-A **
5817804-C-A 5949763-C-A **
5815508-C-T 5947467-C-T **
5785996-C-A 5917955-C-A **
5760416-A-C 5892375-A-C **
5738824-C-A 5870783-C-A **
5691126-G-A 5823085-G-A **
22333946-A-G 20172060-A-G FGC21832 DYZ19 **
4107723-G-T 4239682-G-T **
4697595-C-A 4829554-C-A **
2895239-G-T 3027198-G-T **
3641350-G-T 3773309-G-T **
2960319-G-A 3092278-G-A **
2986338-C-A 3118297-C-A **
3013569-C-A 3145528-C-A **
3253139-C-A 3385098-C-A **
3986043-G-T 4118002-G-T **
3267329-A-T 3399288-A-T **
3375611-C-A 3507570-C-A **
3396028-G-T 3527987-G-T **
2899178-T-C 3031137-T-C **
3602657-C-A 3734616-C-A **
3609884-A-G 3741843-A-G **
3426620-C-A 3558579-C-A **
2803589-G-A 2935548-G-A **
3778341-T-C 3910300-T-C **
3851495-C-A 3983454-C-A **
3963658-C-T 4095617-C-T **
2758655-G-T 2890614-G-T **
3961581-G-A 4093540-G-A **
3950264-T-C 4082223-T-C **
3712154-GA-G 3844113-GA-G **
22255507-T-G 20093621-T-G DYZ19 ***
13861417-A-AT 11740711-A-AT ***
13476984-G-C 11321308-G-C ***
13674236-A-T 11518560-A-T ***
13867782-C-CT 11747076-C-CT ***
13674228-G-A 11518552-G-A ***
13674225-A-G 11518549-A-G ***
22224654-T-G 20062768-T-G DYZ19 ***
22222779-T-TC 20060893-T-TC DYZ19 ***
13870003-C-T 11749297-C-T ***
22282238-G-C 20120352-G-C DYZ19 ***
13870083-A-T 11749377-A-T ***
17662010-ATG-A,AT 15550130-ATG-A,AT 21×TG***
13870111-A-G 11749405-A-G ***
13652035-T-G 11496359-T-G ***
13652045-A-G 11496369-A-G ***
13832983-A-T 11712277-A-T ***
13858738-T-C 11738032-T-C ***
13861378-C-T 11740672-C-T Y40186 4×GGAAT***
13828202-A-G 11707496-A-G ***
13832969-C-A 11712263-C-A ***
13847064-C-G 11726358-C-G ***
22247429-T-G 20085543-T-G DYZ19 ***
13855360-C-T 11734654-C-T ***
22222774-AC-A 20060888-AC-A DYZ19 ***
13828566-A-T 11707860-A-T ***
22247413-G-A 20085527-G-A DYZ19 ***
22247022-C-A,CTA 20085136-C-A,CTA DYZ19 ***
21139903-G-A 18978017-G-A ***
22253461-T-G 20091575-T-G BY22440 DYZ19 ***
13818280-C-A 11697574-C-A ***
22229741-A-G 20067855-A-G DYZ19 ***
13805396-TGAATG-A 11684690-TGAATG-A 11×GAATG***
13676258-G-A 11520582-G-A ***
18937558-G-T 16825678-G-T ***
13674254-T-C 11518578-T-C ***
13861320-A-G 11740614-A-G ***
22251559-C-A 20089673-C-A DYZ19 ***
22222765-T-A 20060879-T-A DYZ19 ***
28811209-G-C 26665062-G-C ***
13476977-C-T 11321301-C-T ***
13476347-C-T 11320671-C-T ***
22303945-C-A 20142059-C-A BY25056 DYZ19 ***
27030471-C-A 24884324-C-A P1_r4 ***
13855376-A-G 11734670-A-G ***
13450014-C-A 11294338-C-A ***
13140440-T-C 10629926-T-C ***
58972974-C-T 56826827-C-T ***
28811215-T-G 26665068-T-G ***
13476348-C-A 11320672-C-A ***
13447601-A-T 11291925-A-T ***
6310853-GCACA-G 6442812-GCACA-G IR3_Dst 17×CA***
13804928-A-G 11684222-A-G ***
13870049-T-C 11749343-T-C ***
13870038-A-C 11749332-A-C ***
13870025-G-C 11749319-G-C ***
13870020-G-T 11749314-G-T ***
13674224-A-G 11518548-A-G ***
56837722-T-G ***
28811213-A-G 26665066-A-G ***
6119732-G-C 6251691-G-C ***
9191076-AAC-A 9353467-AAC-A 20×AC***
13465822-A-C 11310146-A-C ***
13405147-T-C 11249471-T-C ***
13461152-T-G 11305476-T-G ***
13459163-T-C 11303487-T-C ***
13456296-T-C 11300620-T-C ***
13453695-T-C 11298019-T-C ***
13449999-T-A 11294323-T-A ***
13447598-G-C 11291922-G-C ***
13447314-TTCCACTCCACTCCAC-T,TTCCACTCCATCCCAT 11291638-TTCCACTCCACTCCAC-T,TTCCACTCCATCCCAT 8×TCCAC***
13405153-T-A 11249477-T-A ***
13196105-C-T 11040429-C-T ***
9958280-T-A 10120671-T-A ***
13196102-C-T 11040426-C-T ***
13143872-C-A 10633358-C-A ***
13142023-C-T 10631509-C-T ***
13141079-ATTCCGTTCCATTCCGTTTTG-A,ATTCCGTTCCATTCCGT 10630565-ATTCCGTTCCATTCCGTTTTG-A,ATTCCGTTCCATTCCGT ***
13139563-T-C 10629049-T-C ***
22300725-G-C 20138839-G-C DYZ19 ***
13139543-T-C 10629029-T-C ***
10024016-T-TC 10186407-T-TC ***
10024015-T-TTTGTCTG 10186406-T-TTTGTCTG ***
22284110-T-A 20122224-T-A DYZ19 ***
14219809-C-A 12099103-C-A ***
22303887-G-A 20142001-G-A BY22451 DYZ19 ***
11656457-T-C ***
10841983-C-T ***
11015799-T-A ***
11028216-ACTGAAC-A,ACA ***
19079039-C-A 16967159-C-A ***
13309488-C-A 11153812-C-A ***
23200665-C-A 21038779-C-A ***
13481004-C-A 11325328-C-A ***
7038540-C-A 7170499-C-A ***
13838465-T-A 11717759-T-A ***
16092549-C-A 13980669-C-A ***
13487712-GGCC-AGCC,G 11332036-GGCC-AGCC,G ***
13465979-T-C 11310303-T-C ***
21491124-A-G 19329238-A-G ***
15404329-G-GAA 13292449-G-GAA 13×A***
14485159-G-T 12364428-G-T ***
13843713-A-C,T 11723007-A-C,T 10×GGAAT***
14574199-C-A 12462399-C-A ***
13457708-CTAGTG-C,T 11302032-CTAGTG-C,T ***
10971866-C-A ***
10946733-C-A ***
2895133-G-A 3027092-G-A ***
10791211-CT-C ***
6775276-A-T 6907235-A-T ***
6915818-TG-T 7047777-TG-T ***
7617750-A-G 7749709-A-G ***
7617755-A-T 7749714-A-T ***
7990672-C-A 8122631-C-A ***
8154179-C-A 8286138-C-A ***
10773052-CATTCC-C,CACTCA ***
10781228-A-C,G ***
3334605-A-G 3466564-A-G ***
21554473-ATT-A,AT 19392587-ATT-A,AT 17×T***
2895153-T-C 3027112-T-C ***
2895150-C-T 3027109-C-T ***
10880029-GTTCCA-G ***
10659507-T-TATTCCATTCC ***
10967494-A-T ***
2895142-C-T 3027101-C-T ***
15132065-AT-A,ATT 13020152-AT-A,ATT 14×T***
11035124-C-A ***
58977800-C-CTCCATCCCAT,T 56831653-C-CTCCATCCCAT,T ***
28787269-GAATTC-G 26641122-GAATTC-G ***
22303926-T-A 20142040-T-A BY25055 DYZ19 ***
22452849-C-G 20290963-C-G DYZ19 ***
26170512-A-G 24024365-A-G A4477 P1_Y1 ***
24961827-G-GTC 22815680-G-GTC g1 ***
24911725-A-T 22765578-A-T g1 ***
17135970-C-A 15024090-C-A ***
17315465-C-A 15203585-C-A ***
24224674-A-G 22078527-A-G P3_b1 ***
24127621-T-C 21981474-T-C P3_b1 9×A***
22456846-GC-G 20294960-GC-G DYZ19 ***
22339878-T-G 20177992-T-G DYZ19 ***
28787351-A-G 26641204-A-G ***
22339865-T-G 20177979-T-G DYZ19 ***
22339847-C-G 20177961-C-G DYZ19 ***
22339808-A-G 20177922-A-G DYZ19 ***
22307698-G-A 20145812-G-A DYZ19 ***
22307671-C-G 20145785-C-G DYZ19 ***
18241723-C-A 16129843-C-A ***
18528025-T-C 16416145-T-C P6_Dst ***
18534154-A-G 16422274-A-G P6_Dst ***
26545468-A-T 24399321-A-T P1_g2 ***
28798927-G-A 26652780-G-A ***
15904156-A-C 13792276-A-C ***
28814993-G-T 26668846-G-T ***
24070760-TAC-T 21924613-TAC-T P3_b1 8×AC***
58981343-C-T 56835196-C-T ***
58981260-G-C 56835113-G-C ***
58978988-T-C 56832841-T-C ***
58978312-T-C 56832165-T-C ***
58975913-C-CATTCCATTCCATCTCATTGCATTCG 56829766-C-CATTCCATTCCATCTCATTGCATTCG ***
58974891-C-A 56828744-C-A ***
58873210-CCATTG-C 56717651-GAATGC-G ***
28805237-TGGAATGGAATGGAATG-A 26659090-TGGAATGGAATGGAATG-A ***
28798937-G-A 26652790-G-A ***
28801741-T-G 26655594-T-G ***
28801650-A-T 26655503-A-T ***
28801616-C-G 26655469-C-G ***
28800152-GAATGC-G 26654005-GAATGC-G ***
16702908-T-C 14591028-T-C ***
16710376-G-T 14598496-G-T ***
28799852-G-A 26653705-G-A ***
28799830-G-T 26653683-G-T ***
13652050-A-G 11496374-A-G ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

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