Tree Position

A0-T-YP2191 > P305[A1] > A1b > BT/A1b2 > M168/PF1416[CT] > P143[CF] > M89/PF2746[F] > F1329/M3658[GHI > F929[HIJK] > IJK > IJ > J > J1 > Z2215 > Exact position not yet finalized.

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STR1kG
HG03767
18845978-C-A 16734098-C-A FT313626 Y+
13414248-T-C 11258572-T-C +
13591247-C-T 11435571-C-T +
16576367-T-C 14464487-T-C PH2375 YY+
16762296-C-T 14650416-C-T YY+
18946138-G-C 16834258-G-C ZS3425 YY+
2670995-A-G 2802954-A-G ZS3248 Y+
2706597-G-A 2838556-G-A ZS3249 YY+
2716395-G-A 2848354-G-A ZS3250 YY+
3307764-G-T 3439723-G-T ZS3252 +
3455869-A-G 3587828-A-G ZS3254 +
3699987-A-T 3831946-A-T ZS3258 +
3713710-A-T 3845669-A-T ZS3260 +
3784684-C-T 3916643-C-T ZS3262 +
3844269-A-T 3976228-A-T ZS3263 +
4203053-T-A 4335012-T-A ZS3266 +
4769558-G-A 4901517-G-A ZS3269 +
4933838-G-A 5065797-G-A ZS3273 +
5059181-C-T 5191140-C-T ZS3274 +
5278432-C-T 5410391-C-T +
5382447-T-A 5514406-T-A ZS3276 +
5382455-T-G 5514414-T-G ZS3277 +
5466598-G-A 5598557-G-A ZS3278 +
5490699-C-T 5622658-C-T ZS3279 +
5543844-C-T 5675803-C-T ZS3280 +
5574384-T-A 5706343-T-A ZS3281 +
5588671-G-T 5720630-G-T ZS3282 +
5621257-T-G 5753216-T-G +
5846716-A-G 5978675-A-G ZS3283 +
5947924-T-A 6079883-T-A ZS3284 +
6020816-C-T 6152775-C-T ZS3285 +
6790429-G-A 6922388-G-A ZS3288 Y+
6797472-G-C 6929431-G-C ZS3289 YY+
6810517-G-C 6942476-G-C ZS3290 YY+
6857026-C-T 6988985-C-T ZS3291 YY+
7046155-G-T 7178114-G-T ZS3296 YY+
7062816-T-G 7194775-T-G ZS3297 Y+
7582478-C-T 7714437-C-T ZS3302 YY+
7801965-C-T 7933924-C-T ZS3306 YY+
8009591-C-T 8141550-C-T ZS3308 YY+
8050251-G-A 8182210-G-A ZS3309 YY+
8081764-G-C 8213723-G-C ZS3310 YY+
8241516-T-C 8373475-T-C ZS3311 YY+
8348529-C-T 8480488-C-T ZS3313 BZ182 YY+
8376068-G-A 8508027-G-A ZS3314 YY+
8378186-C-T 8510145-C-T ZS3315 Z39386 YY+
8539453-C-A 8671412-C-A ZS3316 YY+
8647322-T-G 8779281-T-G ZS3317 YY+
8707507-T-G 8839466-T-G ZS3319 YY+
8817434-A-G 8949393-A-G ZS3320 YY+
9438026-G-A 9600417-G-A ZS3324 YY+
9730488-A-G 9892879-A-G FGC53935 IR3_Prx +
9894989-A-G 10057380-A-G ZS3325 YY+
13133313-G-C 10622799-G-C ZS3329 +
13312689-G-A 11157013-G-A ZS3330 +
13369076-C-G 11213400-C-G ZS3331 +
13563281-A-T 11407605-A-T ZS3332 +
13575651-G-C 11419975-G-C ZS3333 +
13592642-G-C 11436966-G-C ZS3334 +
13655116-T-G 11499440-T-G ZS3335 +
13705279-A-G 11549603-A-G BY89145 +
13832515-AT-A 11711809-AT-A +
13852892-G-T 11732186-G-T ZS3336 +
13910191-C-T 11789485-C-T ZS3337 Y+
13945581-G-A 11824875-G-A ZS3340 Y+
14035349-G-A 11914643-G-A ZS11775 YY+
14099851-G-T 11979145-G-T ZS3342 YY+
14130035-A-T 12009329-A-T ZS3343 Y+
14162055-A-G 12041349-A-G ZS3345 Y+
14242204-C-T 12121498-C-T ZS3347 YY+
14344793-C-A 12224088-C-A ZS3348 Y+
14368679-A-G 12247975-A-G ZS3349 YY+
14403400-G-A 12282697-G-A ZS3350 YY+
14705596-C-T 12593662-C-T ZS3352 YY+
14758415-C-T 12646484-C-T ZS3353 Y+
14986552-T-C 12874620-T-C ZS3354 YY+
15013691-G-A 12901779-G-A ZS3355 YY+
15140578-C-T 13028665-C-T ZS3356 YY+
15402322-C-A 13290442-C-A ZS3357 YY+
15449359-G-C 13337479-G-C ZS3360 YY+
15449428-A-T 13337548-A-T ZS3361 YY+
15449429-A-C 13337549-A-C ZS3362 YY+
15467683-C-T 13355803-C-T ZS3363 YY+
15502150-T-C 13390270-T-C ZS3364 YY+
15545627-G-T 13433747-G-T ZS3365 YY+
15718759-C-G 13606879-C-G ZS3367 YY+
15815791-G-C 13703911-G-C ZS3369 YY+
15849157-G-A 13737277-G-A ZS3370 YY+
15920150-A-G 13808270-A-G ZS3372 Y+
15962400-G-A 13850520-G-A ZS3375 Y+
16041807-T-C 13929927-T-C ZS3378 YY+
16056313-T-C 13944433-T-C ZS3379 Y+
16241371-G-A 14129491-G-A ZS3380 Y+
16249199-G-T 14137319-G-T ZS3381 YY+
16386241-C-T 14274361-C-T M7649 YY+
16400052-T-C 14288172-T-C ZS3382 YY+
16432201-C-T 14320321-C-T ZS3383 YY+
16573464-T-C 14461584-T-C ZS3385 Y+
16745779-C-T 14633899-C-T ZS3386 YY+
16823248-G-T 14711368-G-T ZS3387 YY+
16911277-G-T 14799397-G-T ZS3389 YY+
17017520-C-T 14905640-C-T ZS3391 YY+
17025508-C-T 14913628-C-T ZS3392 Y+
17028481-T-A 14916601-T-A ZS3393 YY+
17050469-A-T 14938589-A-T ZS3394 YY+
17072221-T-C 14960341-T-C ZS3395 YY+
17211079-G-A 15099199-G-A ZS3397 YY+
17340100-G-T 15228220-G-T ZS3398 YY+
17391498-C-A 15279618-C-A ZS3399 YY+
17414804-C-T 15302924-C-T ZS3400 YY+
17466849-T-C 15354969-T-C ZS3403 YY+
17621346-A-T 15509466-A-T ZS3405 Y+
17637521-T-C 15525641-T-C ZS3406 YY+
17639640-A-C 15527760-A-C ZS3407 Y+
17644074-C-T 15532194-C-T ZS3408 Y+
17666353-T-C 15554473-T-C ZS3409 YY+
17956195-C-T 15844315-C-T ZS3411 YY+
17956247-C-A 15844367-C-A ZS3412 YY+
18007974-A-C 15896094-A-C ZS3413 P7_Gap Y+
18058245-C-A 15946365-C-A ZS3414 Y+
18093704-C-T 15981824-C-T ZS3415 Y+
18130288-A-G 16018408-A-G ZS3416 YY+
18141444-C-T 16029564-C-T ZS3417 Y+
18161340-T-C 16049460-T-C ZS3418 YY+
18423113-C-A 16311233-C-A ZS3419 P6_Gap +
18753647-C-T 16641767-C-T ZS3421 YY+
18799367-A-G 16687487-A-G ZS3422 Y+
18869643-A-G 16757763-A-G ZS3423 YY+
18974701-G-T 16862821-G-T ZS3426 YY+
19029276-C-T 16917396-C-T Y+
19103688-C-A 16991808-C-A ZS3428 YY+
19214499-G-C 17102619-G-C ZS3429 YY+
19215273-C-T 17103393-C-T ZS3430 YY+
19336814-A-C 17224934-A-C ZS3432 YY+
19508889-T-C 17397009-T-C ZS3434 YY+
21098579-A-T 18936693-A-T ZS3436 YY+
21140525-C-T 18978639-C-T ZS3437 YY+
21166338-A-G 19004452-A-G ZS3438 YY+
21178665-T-C 19016779-T-C ZS3439 YY+
21206113-G-A 19044227-G-A ZS3440 YY+
21213616-T-C 19051730-T-C ZS3441 YY+
21339855-G-A 19177969-G-A ZS3442 Y+
21412629-A-T 19250743-A-T ZS3444 YY+
21473254-A-G 19311368-A-G ZS3446 YY+
21559695-T-C 19397809-T-C ZS3449 YY+
21597144-G-A 19435258-G-A ZS3451 YY+
21598064-T-A 19436178-T-A ZS3452 Y+
21726158-G-T 19564272-G-T ZS3454 YY+
21843232-G-A 19681346-G-A ZS3455 YY+
21857105-A-G 19695219-A-G ZS3456 YY+
21915776-A-C 19753890-A-C ZS3457 YY+
22176072-C-A 20014186-C-A ZS3460 YY+
22243646-G-A 20081760-G-A DYZ19 +
22289228-G-T 20127342-G-T ZS3461 DYZ19 +
22448921-G-A 20287035-G-A ZS3462 DYZ19 +
22470432-C-T 20308546-C-T ZS3463 DYZ19 +
22509394-C-T 20347508-C-T ZS3464 DYZ19 +
22590066-C-A 20428180-C-A ZS3465 YY+
22630982-G-T 20469096-G-T ZS3466 Y+
22685130-A-T 20523244-A-T ZS3467 YY+
22687368-G-C 20525482-G-C PF7261 YY+
22726327-A-T 20564441-A-T ZS3468 YY+
22799010-T-A 20637124-T-A ZS3469 Y+
22861794-T-C 20699908-T-C ZS3470 YY+
22958810-T-G 20796924-T-G ZS3471 YY+
23076847-G-A 20914961-G-A Y+
23087629-C-T 20925743-C-T ZS3475 YY+
23093343-T-C 20931457-T-C ZS3476 Y+
23102835-C-T 20940949-C-T ZS3477 Y+
23136528-C-T 20974642-C-T ZS3479 YY+
23258050-A-C 21096164-A-C ZS3481 YY+
23273310-G-T 21111424-G-T ZS3482 YY+
23362766-G-T 21200880-G-T ZS3483 Y+
23389228-C-T 21227342-C-T ZS3484 YY+
23478432-T-C 21316546-T-C ZS3485 YY+
23515284-G-A 21353398-G-A ZS3486 YY+
23614576-G-A 21452690-G-A ZS3487 YY+
23840525-C-A 21678639-C-A ZS3489 Y+
23981853-G-T 21835706-G-T BY25355 Y+
28465801-A-G 26319654-A-G ZS3493 +
28566839-G-A 26420692-G-A ZS3494 +
28609706-G-A 26463559-G-A ZS3495 Y+
28617621-A-G 26471474-A-G ZS3496 Y+
28645089-G-A 26498942-G-A ZS3497 +
28652919-T-C 26506772-T-C ZS3500 +
28654850-A-T 26508703-A-T ZS3501 +
28670188-A-C 26524041-A-C ZS3502 +
28765692-C-G 26619545-C-G ZS3504 Y+
28809220-T-G 26663073-T-G ZS3505 +

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.