Tree Position

R-P312/S116 > Z40481 > ZZ11 > U152/S28 > L2/S139 > Z41150 > Z49 > Z142/S211 > FGC22963 > FGC22940 > FGC22942 > FGC22952 > FGC22938

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFGC
WHYDW
9877898-G-A 10040289-G-A FGC22943 YY+
23266995-C-T 21105109-C-T FGC22972 YY+
28534281-T-C 26388134-T-C FGC22974 Y+
15770697-T-A 13658817-T-A FGC22950 YY+
21282976-G-GT 19121090-G-GT +
15922641-A-G 13810761-A-G FGC22951 Y+
6664938-T-C 6796897-T-C FGC22936 Y+
6710290-G-A 6842249-G-A FGC22937 Y+
17591577-A-C 15479697-A-C FGC22958 YY+
6352882-AC-A 6484841-AC-A +
16325349-A-T 14213469-A-T FGC22953 YY+
22900845-C-T 20738959-C-T FGC22971 YY+
16523267-C-G 14411387-C-G FGC22954 YY+
23755792-AG-A 21593906-AG-A +
13589608-C-G 11433932-C-G FGC22946 +
13597828-C-T 11442152-C-T FGC22947 +
16949619-G-A 14837739-G-A FGC22957 YY+
7173652-A-G 7305611-A-G Z5221 YY+
17920739-G-A 15808859-G-A FGC22959 YY+
22473375-C-T 20311489-C-T FGC22933 DYZ19 +
18873943-G-A 16762063-G-A FGC22962 Y+
13576269-C-A 11420593-C-A FGC22945 *
26127839-C-G 23981692-C-G FGC22973 P1_Y1 *
21272372-C-A 19110486-C-A FGC22965 Y*
6435915-C-A 6567874-C-A FGC22935 *
19490312-GTCTT-G 17378432-GTCTT-G *
13892714-G-A 11772008-G-A FGC22949 Y*
7621693-T-A 7753652-T-A FGC22939 Y*
18840597-T-G 16728717-T-G FGC22938FGC22961 YY*
22701648-C-T 20539762-C-T FGC22970 YY*
18391552-A-G 16279672-A-G FGC22960 P6_Gap *
3628941-G-A 3760900-G-A FGC22934 *
10036763-C-T 10199154-C-T FGC22944 *
21709997-A-T 19548111-A-T FGC22967 YY*
22472592-G-A 20310706-G-A DYZ19 **
4474248-T-TTA 4606207-T-TTA 8×TA**
58968241-T-TATAG 56822094-T-TATAG **
58970570-G-A 56824423-G-A **
58995194-G-C 56849047-G-C **
13401900-T-C 11246224-T-C **
5636119-CCT-C 5768078-CCT-C **
9996875-C-T 10159266-C-T **
13339414-A-G 11183738-A-G **
13527789-G-A 11372113-G-A **
13527802-T-G 11372126-T-G **
59014213-C-T 56868066-C-T **
23307142-T-C 21145256-T-C **
22472473-G-T 20310587-G-T DYZ19 **
22472524-C-G 20310638-C-G DYZ19 **
22524777-C-T 20362891-C-T **
58997178-T-C 56851031-T-C **
5035558-T-TTGTG 5167517-T-TTGTG 22×TG**
58995193-T-C 56849046-T-C **
13684859-GTGGAA-G 11529183-GTGGAA-G **
4567971-G-T 4699930-G-T **
17023767-G-A 14911887-G-A **
4993818-G-A 5125777-G-A **
6074688-ATGTG-A 6206647-ATGTG-A 22×TG**
15973161-G-C 13861281-G-C **
15365975-T-C 13254095-T-C **
3096495-T-C 3228454-T-C **
14191757-C-A 12071051-C-A **
9909402-C-T 10071793-C-T **
18913861-C-CGATA 16801981-C-CGATA 6×GATA**
9939206-T-C 10101597-T-C **
13463952-C-CACCA 11308276-C-CACCA **
13650793-G-A 11495117-G-A **
22196744-G-A 20034858-G-A **
9402671-C-G 9565062-C-G **
27637361-A-T 25491214-A-T P1_Y2 ***
27177539-C-T 25031392-C-T P1_g3 ***
27177550-C-A 25031403-C-A P1_g3 ***
22845079-A-T 20683193-A-T ***
28802749-A-G 26656602-A-G ***
27298452-T-A 25152305-T-A P1_g3 ***
27715406-C-A 25569259-C-A P1_Y2 ***
26991244-A-G 24845097-A-G P1_r4 ***
24142558-A-T 21996411-A-T P3_b1 11×T***
28556479-G-T 26410332-G-T ***
24665352-T-C 22519205-T-C P3_b2 ***
28556478-G-T 26410331-G-T ***
28556472-G-T 26410325-G-T ***
27177514-C-A 25031367-C-A P1_g3 ***
25566350-A-G 23420203-A-G P1_gr1 ***
27715448-T-C 25569301-T-C P1_Y2 ***
25350869-C-T 23204722-C-T P2_r1 ***
13864684-A-T 11743978-A-T ***
22530313-A-G 20368427-A-G ***
20387683-G-T 18225797-G-T P5_Dst ***
22129823-A-G 19967937-A-G ***
22129806-T-A 19967920-T-A ***
21871488-T-A 19709602-T-A ***
21854194-C-T 19692308-C-T ***
20387972-C-A 18226086-C-A P5_Dst ***
20387962-G-A 18226076-G-A P5_Dst ***
20387950-T-C 18226064-T-C P5_Dst ***
20387933-A-T 18226047-A-T P5_Dst ***
20387929-G-A 18226043-G-A P5_Dst ***
20387663-C-T 18225777-C-T P5_Dst ***
22130059-G-T 19968173-G-T ***
20387654-A-G 18225768-A-G P5_Dst ***
20387628-C-T 18225742-C-T P5_Dst ***
20004695-A-T 17892815-A-T P5_Prx ***
19210278-C-T 17098398-C-T ***
19210270-C-A 17098390-C-A ***
18801278-T-A 16689398-T-A ***
18331222-G-T 16219342-G-T P6_Prx ***
18015294-G-T 15903414-G-T P7_Dst ***
17844199-C-A 15732319-C-A ***
22129835-A-T 19967949-A-T ***
22227860-T-A 20065974-T-A DYZ19 ***
22472542-G-A 20310656-G-A DYZ19 ***
22337442-A-T 20175556-A-T DYZ19 ***
22472540-A-G 20310654-A-G DYZ19 ***
22472535-C-G 20310649-C-G DYZ19 ***
22366446-C-A 20204560-C-A DYZ19 ***
22364603-G-A 20202717-G-A DYZ19 ***
22360601-G-T 20198715-G-T DYZ19 ***
22348526-G-T 20186640-G-T DYZ19 ***
22342821-T-G 20180935-T-G DYZ19 ***
22341697-C-G 20179811-C-G DYZ19 ***
22341523-C-T 20179637-C-T DYZ19 ***
28812167-A-C 26666020-A-C ***
22227864-C-G 20065978-C-G DYZ19 ***
22336136-G-T 20174250-G-T DYZ19 ***
22307200-G-T 20145314-G-T DYZ19 ***
22292707-A-T 20130821-A-T DYZ19 ***
22292657-T-A 20130771-T-A DYZ19 ***
22268150-A-G 20106264-A-G DYZ19 ***
22234959-A-T 20073073-A-T DYZ19 ***
22234925-T-A 20073039-T-A DYZ19 ***
22234892-G-A 20073006-G-A DYZ19 ***
22234881-C-A 20072995-C-A DYZ19 ***
28802780-G-A 26656633-G-A ***
58881264-C-T 56709607-G-A ***
58823126-C-A 56767745-G-T ***
13485346-CCCCTGTA-TCTCTTTT 11329670-CCCCTGTA-TCTCTTTT ***
13832482-TGATCATGAATGGAAAAGATTGGAA-T 11711776-TGATCATGAATGGAAAAGATTGGAA-T ***
13745206-ATTCG-GTTCA 11589530-ATTCG-GTTCA ***
13677728-GTAATCAAATTGAG-AAATGGAATGGAC 11522052-GTAATCAAATTGAG-AAATGGAATGGAC ***
13654641-CA-TC 11498965-CA-TC ***
13654575-CTGGA-GTGGC 11498899-CTGGA-GTGGC ***
13534639-CCG-TCA 11378963-CCG-TCA ***
13532941-CGAAAGCA-TGACAGCG 11377265-CGAAAGCA-TGACAGCG ***
13527977-TGTGT-AGTGA 11372301-TGTGT-AGTGA ***
13489801-GCCC-ACCA 11334125-GCCC-ACCA ***
13489219-TT-AC 11333543-TT-AC ***
13482910-AATTC-GGTTA 11327234-AATTC-GGTTA ***
13864648-AAGT-TAG 11743942-AAGT-TAG ***
13482004-CCAGTTAT-TCCCTTTG 11326328-CCAGTTAT-TCCCTTTG ***
13475916-ATAA-CGAG 11320240-ATAA-CGAG ***
13466742-CCCG-GCCT 11311066-CCCG-GCCT ***
13466624-GAAT-CAAA 11310948-GAAT-CAAA ***
13133193-GCAGCC-CCAGAT 10622679-GCAGCC-CCAGAT ***
10065652-AATA-CATG 10228043-AATA-CATG ***
10045304-GTAAAT-CTACAC 10207695-GTAAAT-CTACAC ***
9997490-CC-GG 10159881-CC-GG ***
9997472-CAAAG-AAAAA 10159863-CAAAG-AAAAA ***
9972686-TTTC-ATTT 10135077-TTTC-ATTT ***
13864641-GTACC-G 11743935-GTACC-G ***
13865849-CGGATC-GGAATG 11745143-CGGATC-GGAATG ***
9914123-GGTAGA-TGTACT 10076514-GGTAGA-TGTACT ***
21929600-G-GTATA 19767714-G-GTATA 12×TA***
58995191-TTTG-ATCC 56849044-TTTG-ATCC ***
58973861-ATTT-GTTC 56827714-ATTT-GTTC ***
58840436-TATTCAC-CATACAA 56750429-GTGAATA-TTGTATG ***
28784818-AGT-TGG 26638671-AGT-TGG ***
26344423-CT-C 24198276-CT-C P1_Y1 28×T***
24036989-A-AT 21890842-A-AT 11×T***
22703626-GAAAG-AAAAA 20541740-GAAAG-AAAAA ***
22472570-GTAATT-ACACTTA 20310684-GTAATT-ACACTTA DYZ19 ***
22472561-AGC-GGT 20310675-AGC-GGT DYZ19 ***
22341613-ACAGA-CAAGT 20179727-ACAGA-CAAGT DYZ19 ***
21713438-TAA-T 19551552-TAA-T 16×A***
13932159-AT-A 11811453-AT-A ***
21388667-CT-C 19226781-CT-C 14×T***
19853737-TGC-AAA 17741857-TGC-AAA P5_Prx ***
19129793-TA-T 17017913-TA-T 13×A***
19071277-TC-AG 16959397-TC-AG ***
17914218-GTATATA-G 15802338-GTATATA-G 15×TA***
16612631-G-GT 14500751-G-GT ***
16602638-CT-C 14490758-CT-C 15×T***
14799364-G-GT 12687435-G-GT 8×T***
14391874-TA-T 12271170-TA-T 15×A***
13960586-A-AGGAT 11839880-A-AGGAT 13×GGAT***
13932164-TATA-T 11811458-TATA-T ***
9941268-T-TCTAA 10103659-T-TCTAA ***
7033238-TAC-AAAA 7165197-TAC-AAAA ***
58843739-C-T 56747132-G-A ***
58884347-C-T 56706524-G-A ***
9997359-TG-CT 10159750-TG-CT ***
9997342-TA-CC 10159733-TA-CC ***
59006825-A-C 56860678-A-C ***
58916668-C-A 56674203-G-T ***
58916572-C-A 56674299-G-T ***
58913315-G-C 56677556-C-G ***
58904339-G-T 56686532-C-A ***
58904322-G-A 56686549-C-T ***
58904297-A-C 56686574-T-G ***
58904292-T-C 56686579-A-G ***
58883904-A-C 56706967-T-G ***
13466649-GGTGC-AGTGG 11310973-GGTGC-AGTGG ***
58877101-A-T 56713770-T-A ***
58877095-C-A 56713776-G-T ***
58877081-A-T 56713790-T-A ***
58876980-T-C 56713891-A-G ***
58855391-C-T 56735480-G-A ***
58854252-C-G 56736619-G-C ***
58848712-T-C 56742159-A-G ***
58848706-A-T 56742165-T-A ***
58847402-G-C 56743469-C-G ***
58846765-C-A 56744106-G-T ***
58846198-C-T 56744673-G-A ***
21823564-CGG-C 19661678-CGG-C 12×G***
18756798-GT-G 16644918-GT-G 19×T***
5344496-AAAAAAAAAAAAAT-A 5476455-AAAAAAAAAAAAAT-A ***
2777828-TAA-T 2909787-TAA-T 15×A***
5227087-CAA-C 5359046-CAA-C 21×A***
5179515-GATAT-G 5311474-GATAT-G 13×AT***
4973668-CAAAAAA-C 5105627-CAAAAAA-C 19×A***
4794852-CTTC-TTTT 4926811-CTTC-TTTT ***
4545124-G-GACACAC 4677083-G-GACACAC 12×AC***
4539217-GA-G 4671176-GA-G 15×A***
4067508-C-CTTTT 4199467-C-CTTTT 29×T***
3859448-TTA-T 3991407-TTA-T ***
3411690-CA-C 3543649-CA-C 30×A***
2795555-ATTTG-TTTTT 2927514-ATTTG-TTTTT ***
9935507-AT-TG 10097898-AT-TG ***
5400488-G-TT 5532447-G-TT ***
9997459-T-TTA 10159850-T-TTA ***
7252377-CA-C 7384336-CA-C 14×A***
16354869-CA-C 14242989-CA-C 13×A***
5104781-G-GT 5236740-G-GT 10×T***
3115734-GA-G 3247693-GA-G 14×A***
5781302-G-GA 5913261-G-GA 13×A***
14933566-CT-C 12821631-CT-C 16×T***
14096636-G-AA 11975930-G-AA ***
14329736-GT-G 12209030-GT-G 17×T***
8296263-G-GA 8428222-G-GA 17×A***
13295372-AT-A 11139696-AT-A 13×T***
17632569-A-G 15520689-A-G ***
13864648-A-T 11743942-A-T ***
17541200-A-C 15429320-A-C ***
10060255-G-A 10222646-G-A ***
4941475-AT-A 5073434-AT-A 12×T***
15993681-G-GTA 13881801-G-GTA 10×TA***
17291771-A-AT 15179891-A-AT 13×T***
13543758-A-C 11388082-A-C ***
13536954-A-T 11381278-A-T ***
13527907-A-G 11372231-A-G ***
13492158-C-G 11336482-C-G ***
13432695-G-C 11277019-G-C ***
13401802-T-C 11246126-T-C Z11995 ***
10060245-T-G 10222636-T-G ***
22282201-G-A 20120315-G-A DYZ19 ***
10010669-AG-A 10173060-AG-A ***
5278411-CA-C 5410370-CA-C 13×A***
13482982-CCT-TAC 11327306-CCT-TAC ***
10015112-CTCCT-TTCCC 10177503-CTCCT-TTCCC ***
5344509-T-A 5476468-T-A ***
7758720-CTTT-C 7890679-CTTT-C 17×T***
22421492-A-T 20259606-A-T DYZ19 ***
3522968-TAA-T 3654927-TAA-T 24×A***
5338087-AT-A 5470046-AT-A 16×T***
9951713-CCG-TCA 10114104-CCG-TCA ***
16340147-G-GAAAAAA 14228267-G-GAAAAAA 22×A***
58877112-T-C 56713759-A-G ***
28585427-T-G 26439280-T-G ***
13442524-G-A 11286848-G-A ***
13469483-T-C 11313807-T-C ***
58972853-CA-AT 56826706-CA-AT ***
10012600-TT-GG 10174991-TT-GG ***
58992113-T-C 56845966-T-C ***
19138207-A-AAT 17026327-A-AAT ***
18598006-ATC-A 16486126-ATC-A ***
16271796-C-T 14159916-C-T ***
15876360-C-A 13764480-C-A 21×A***
13527924-A-G 11372248-A-G ***
13385050-G-A 11229374-G-A ***
58840466-CATTGGAGTCA-GATTCGATTCG 56750395-TGACTCCAATG-CGAATCGAATC ***
13374181-G-A 11218505-G-A ***
13298592-C-T 11142916-C-T ***
10049863-T-C 10212254-T-C ***
10049858-A-T 10212249-A-T ***
10025037-A-T 10187428-A-T ***
9997459-T-TTTA 10159850-T-TTTA ***
9950815-C-A 10113206-C-A ***
9935722-T-C 10098113-T-C ***
9914139-C-T 10076530-C-T ***
5022742-T-C 5154701-T-C ***
58910212-T-C 56680659-A-G ***
13708807-G-A 11553131-G-A ***
58854287-C-A 56736584-G-T ***
19210282-C-A 17098402-C-A ***
59004519-G-GTTTAT 56858372-G-GTTTAT ***
10065680-GG-TA 10228071-GG-TA ***
22360528-A-T 20198642-A-T DYZ19 ***
58995119-AGGCA-GGGCG 56848972-AGGCA-GGGCG ***
19845917-AT-A 17734037-AT-A P5_Prx 23×T***
5066184-C-CT 5198143-C-CT 22×T***
59002815-ACG-GCT 56856668-ACG-GCT ***
14658026-CTTTTT-C 12546091-CTTTTT-C 16×T***
58840526-T-C 56750345-A-G ***
13302551-ACAG-CCAA 11146875-ACAG-CCAA ***
58904051-C-A 56686820-G-T ***
58872982-A-T 56717889-T-A ***
22236450-G-T 20074564-G-T DYZ19 ***
23900952-A-T 21739066-A-T ***
22504528-AG-CT 20342642-AG-CT DYZ19 ***
58971672-CGT-TGC 56825525-CGT-TGC ***
28582685-C-A 26436538-C-A ***
13140115-CATTAAA-C 10629601-CATTAAA-C ***
16860788-G-A 14748908-G-A ***
13864680-A-G 11743974-A-G ***
13819943-TTGCATCTAAA-T 11699237-TTGCATCTAAA-T ***
13476003-T-G 11320327-T-G ***
58831567-T-C 56759304-A-G ***
13286655-C-G 11130979-C-G ***
4026253-AT-A 4158212-AT-A 18×T***
13423125-T-C 11267449-T-C Z8981 ***
28434828-C-T 26288681-C-T P1_gr2 ***
13262766-CCCT-TGCC 11107090-CCCT-TGCC ***
5785698-G-C 5917657-G-C ***
13430807-G-A 11275131-G-A ***
22488419-G-A 20326533-G-A DYZ19 ***
59006823-AAAAT-CACAC 56860676-AAAAT-CACAC ***
2850858-C-CT 2982817-C-CT 13×T***
22756990-T-C 20595104-T-C ***
58831496-CCGTTCGAT-TGATTCCAC 56759367-ATCGAACGG-GTGGAATCA ***
10018817-CTGTTG-TTTTA 10181208-CTGTTG-TTTTA ***
26499950-G-T 24353803-G-T P1_Y1 ***
58831512-CATT-TATG 56759356-AATG-CATA ***
16301002-GA-G 14189122-GA-G 18×A***
19709167-G-T 17597287-G-T P5_Prx ***
58831547-CATTT-GATGA 56759320-AAATG-TCATC ***
28721499-CA-C 26575352-CA-C 18×A***
58831521-G-T 56759350-C-A ***
13484500-C-T 11328824-C-T ***
22292697-GGT-TGA 20130811-GGT-TGA DYZ19 ***
15542658-C-CA 13430778-C-CA 16×A***
9951897-C-T 10114288-C-T ***
9985498-C-T 10147889-C-T ***
17467008-G-A 15355128-G-A ***
13445393-C-T 11289717-C-T ***
13489801-G-A 11334125-G-A ***
13481296-G-A 11325620-G-A ***
13481106-A-T 11325430-A-T ***
13481096-G-A 11325420-G-A ***
13481042-T-C 11325366-T-C ***
13480911-T-G 11325235-T-G ***
13470570-G-T 11314894-G-T ***
13465475-C-T 11309799-C-T ***
13463890-G-A 11308214-G-A ***
13406080-G-T 11250404-G-T ***
13538047-T-C 11382371-T-C ***
13373449-A-G 11217773-A-G ***
13332919-G-T 11177243-G-T ***
13298598-T-C 11142922-T-C ***
13246431-C-T 11090755-C-T ***
13222315-G-A 11066639-G-A ***
13222314-G-A 11066638-G-A ***
13222308-G-A 11066632-G-A ***
13222275-G-A 11066599-G-A ***
13134921-C-G 10624407-C-G ***
13133198-C-T 10622684-C-T ***
13489965-A-T 11334289-A-T ***
13540881-G-A 11385205-G-A ***
13110928-T-C 10600414-T-C ***
13862558-A-T 11741852-A-T ***
17247644-G-A 15135764-G-A ***
16860792-G-A 14748912-G-A ***
16612636-C-T 14500756-C-T 15×T***
16313205-A-G 14201325-A-G ***
16237239-A-G 14125359-A-G ***
15999570-A-T 13887690-A-T ***
15684675-A-G 13572795-A-G ***
15066019-T-A 12954111-T-A ***
21651669-CA-C 19489783-CA-C 10×A***
13845800-T-G 11725094-T-G ***
13654592-T-G 11498916-T-G ***
13730334-G-A 11574658-G-A ***
13728322-A-G 11572646-A-G ***
13725328-A-G 11569652-A-G ***
13720062-G-T 11564386-G-T ***
13716407-T-C 11560731-T-C ***
13716372-G-T 11560696-G-T ***
13657848-A-G 11502172-A-G ***
13654630-G-A 11498954-G-A ***
13654625-A-C 11498949-A-C ***
13654611-T-C 11498935-T-C ***
13110952-C-T 10600438-C-T ***
13110904-G-T 10600390-G-T ***
9988314-T-G 10150705-T-G ***
3581180-A-G 3713139-A-G ***
5135265-G-T 5267224-G-T ***
5083952-C-T 5215911-C-T 17×T***
4291267-C-T 4423226-C-T ***
4144039-T-C 4275998-T-C ***
3995249-T-C 4127208-T-C ***
3922818-T-A 4054777-T-A ***
3922813-G-A 4054772-G-A ***
3757137-G-T 3889096-G-T ***
3661230-T-C 3793189-T-C ***
3055151-T-C 3187110-T-C ***
6195864-T-G 6327823-T-G IR3_Dst ***
2868940-C-A 3000899-C-A ***
2786756-C-T 2918715-C-T ***
2686468-C-T 2818427-C-T ***
3605698-C-T 3737657-C-T ***
13818999-C-A 11698293-C-A ***
10050178-T-C 10212569-T-C ***
10050177-T-C 10212568-T-C ***
13133197-C-A 10622683-C-A ***
22289393-T-C 20127507-T-C DYZ19 ***
2898631-C-A 3030590-C-A ***
5761354-T-A 5893313-T-A ***
6640549-G-T 6772508-G-T ***
13110881-C-G 10600367-C-G ***
9943321-A-T 10105712-A-T ***
10095022-T-A 10257413-T-A ***
10095007-G-T 10257398-G-T ***
10095006-A-T 10257397-A-T ***
10058053-A-G 10220444-A-G ***
10028227-T-A 10190618-T-A ***
10009862-G-A 10172253-G-A ***
9996952-T-G 10159343-T-G ***
9963776-A-G 10126167-A-G ***
9963766-A-G 10126157-A-G ***
9935715-C-T 10098106-C-T ***
6765641-T-G 6897600-T-G ***
9935703-A-G 10098094-A-G ***
9935692-A-C 10098083-A-C ***
9697713-T-G 9860104-T-G IR3_Prx ***
9552186-C-T 9714577-C-T IR3_Prx ***
9552154-T-A 9714545-T-A IR3_Prx ***
9552131-C-A 9714522-C-A IR3_Prx ***
9552121-G-A 9714512-G-A IR3_Prx ***
9372501-A-G 9534892-A-G ***
8064607-A-G 8196566-A-G ***
7423084-A-C 7555043-A-C ***
58999106-TGACA-AGACG 56852959-TGACA-AGACG ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: WHYDW*16000000100000008300000
Used in age calculations16000000100000008300000
Counts of SNPs2014
Variant counts last updated 2017-11-05 23:08:28.

* BED data not available. Using default values.


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