Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > ZZ12 > Z2573

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
N8921
BigY2
N8921
Manual
Edits
22232801-A-T 20070915-A-T DYZ19 ***A*
28816685-A-C 26670538-A-C A*
22276035-G-T 20114149-G-T DYZ19 A*
6873469-C-CA 7005428-C-CA 10×AA*
26013961-T-C 23867814-T-C P1_Y1 ***A*
25601850-A-G 23455703-A-G P1_gr1 ***A*
13687226-T-A 11531550-T-A A*
23714711-C-T 21552825-C-T ***A*
22252637-C-T 20090751-C-T DYZ19 ***A*
22282379-T-G 20120493-T-G DYZ19 A*
18952158-G-A 16840278-G-A Y55115 YY++
21257694-T-G 19095808-T-G Y56414 YY++
21318908-G-A 19157022-G-A Y56528 YY++
21846052-A-G 19684166-A-G Y57284 YY++
22041432-ACT-A 19879546-ACT-A ++
22784614-A-G 20622728-A-G Y58274 YY++
22478298-G-T 20316412-G-T DYZ19 ++
22608334-T-A 20446448-T-A YY**+
18126464-A-T 16014584-A-T Y32631 YY++
23074674-G-A 20912788-G-A Y58699 YY++
23525812-C-T 21363926-C-T Y59290 YY++
9628211-CA-C 9790602-CA-C IR3_Prx +
25206650-A-C 23060503-A-C g1 +
16497888-A-AT 14386008-A-AT ++
18633327-T-C 16521447-T-C Y54697 YY++
22698501-A-T 20536615-A-T Y58155 YY++
17122011-G-A 15010131-G-A Y52801 YY++
14829993-C-T 12718060-C-T Y49941 YY++
9131670-C-T 9294061-C-T Y+**
14744400-T-C 12632469-T-C Y49827 YY++
16690399-G-A 14578519-G-A FGC51642 YY++
8817310-G-A 8949269-G-A Y34278 YY++
18911-C-T +
15042383-T-A 12930473-T-A Y50209 YY++
15205030-C-T 13093116-C-T Y50394 YY++
15664999-G-A 13553119-G-A Y50959 YY++
8528516-G-T 8660475-G-T Y47488 YY++
15787428-A-G 13675548-A-G Y51145 YY++
8291239-G-C 8423198-G-C Y47066 YY++
16237161-A-T 14125281-A-T Y51551 YY++
7457387-C-T 7589346-C-T IR1_L ++
14444568-T-C 12323841-T-C Y49542 Y++
22317455-G-A 20155569-G-A DYZ19 ****
22608328-A-AT 20446442-A-AT ****
22340468-T-C 20178582-T-C DYZ19 ****
22300167-TC-T 20138281-TC-T DYZ19 ****
19412012-GAA-G 17300132-GAA-G ****
22294737-G-A 20132851-G-A DYZ19 ****
19412006-GAG-G,GAA 17300126-GAG-G,GAA 14×AGAA****
28793447-A-T 26647300-A-T *
14232067-C-A 12111361-C-A **
12378538-C-G **
14518437-T-G 12406638-T-G **
13229555-C-A 11073879-C-A **
14470255-G-T 12349524-G-T **
14563223-C-A 12451423-C-A **
13317469-C-A 11161793-C-A **
13429761-G-C 11274085-G-C **
14293698-G-A 12172992-G-A **
14240310-A-G 12119604-A-G **
13966867-A-T 11846161-A-T **
13521229-C-T 11365553-C-T **
14203472-T-C 12082766-T-C **
14073291-C-T 11952585-C-T **
14022941-G-T 11902235-G-T **
13601889-A-G 11446213-A-G **
14022921-G-T 11902215-G-T **
13936428-G-C 11815722-G-C **
13871975-T-A 11751269-T-A **
13860354-A-G 11739648-A-G **
11643042-C-A **
14703533-T-G 12591599-T-G **
13709080-A-G 11553404-A-G **
13642282-A-G 11486606-A-G **
14588910-A-C 12477110-A-C **
58976443-T-A 56830296-T-A **
14703597-G-T 12591663-G-T **
15596833-G-C 13484953-G-C **
16605288-T-C 14493408-T-C **
16336923-GC-G 14225043-GC-G **
16244874-A-C 14132994-A-C **
16180899-C-A 14069019-C-A **
16096027-A-C 13984147-A-C **
16095942-T-C 13984062-T-C **
16015026-C-A 13903146-C-A **
15971373-C-A 13859493-C-A **
15785945-C-A 13674065-C-A **
15648793-C-A 13536913-C-A **
15626566-C-T 13514686-C-T **
15556993-C-T 13445113-C-T Y50831 **
14721657-C-A 12609725-C-A **
15541676-G-T 13429796-G-T **
11022874-T-AA **
15439896-T-C 13328016-T-C Y50656 **
15376247-C-A 13264367-C-A **
15320634-A-C 13208740-A-C **
15189560-C-A 13077646-C-A **
15185324-A-G 13073410-A-G **
15109111-T-C 12997198-T-C **
14992735-T-C 12880820-T-C **
14989259-AAAACCACAAT-A 12877344-AAAACCACAAT-A **
14798576-T-C 12686647-T-C **
14735332-C-A 12623400-C-A **
11033165-T-C **
10094044-C-A 10256435-C-A **
11014078-T-C **
8130624-C-A 8262583-C-A **
10003688-T-G 10166079-T-G **
9967423-C-A 10129814-C-A **
9940537-T-A 10102928-T-A **
9733713-C-A 9896104-C-A IR3_Prx **
9689215-G-A 9851606-G-A IR3_Prx **
9689181-T-C 9851572-T-C IR3_Prx **
9689094-G-C 9851485-G-C IR3_Prx **
9618160-A-T 9780551-A-T IR3_Prx **
9575623-T-TG 9738014-T-TG IR3_Prx **
9398048-A-G 9560439-A-G **
8720625-A-G 8852584-A-G **
7862128-C-A 7994087-C-A **
10034156-T-C 10196547-T-C **
7579583-C-T 7711542-C-T Y46142 **
7451918-G-T 7583877-G-T IR1_L **
7436256-C-CAAATAAAT 7568215-C-CAAATAAAT 10×AAAT**
7348886-G-A 7480845-G-A **
7348626-T-C 7480585-T-C **
7348549-G-C 7480508-G-C **
7323003-C-A 7454962-C-A **
7236646-C-A 7368605-C-A **
7218271-G-T 7350230-G-T **
7111951-A-G 7243910-A-G **
7083859-T-G 7215818-T-G **
10029328-C-G 10191719-C-G **
10037855-C-G 10200246-C-G **
11006830-T-C **
10809135-T-C **
11000387-G-T **
10988634-C-G **
10958366-T-A **
10949047-G-A **
10946059-C-A **
10940167-C-A **
10889030-T-G **
10880530-G-T **
10868983-C-A **
10857968-C-T **
10857928-C-T **
10808596-C-T **
10046149-A-T 10208540-A-T **
10808581-C-CACTGA **
10801600-T-C **
10783033-C-A **
10769806-C-T **
10756986-A-T **
10744754-G-T **
10690709-T-A **
10648144-C-A **
16605300-C-T 14493420-C-T **
10059455-CT-C 10221846-CT-C **
10059405-T-G 10221796-T-G **
16605289-G-C 14493409-G-C **
18395776-T-A 16283896-T-A P6_Gap **
16605302-G-C 14493422-G-C **
22608330-C-CAA 20446444-C-CAA **
23569179-G-C 21407293-G-C **
23418907-G-C 21257021-G-C **
23276512-T-C 21114626-T-C **
23204653-G-A 21042767-G-A **
23037248-T-TA 20875362-T-TA **
23007702-G-A 20845816-G-A **
23004567-A-G 20842681-A-G **
22979397-A-G 20817511-A-G **
22951138-C-A 20789252-C-A **
22874113-C-A 20712227-C-A **
22608332-A-AT 20446446-A-AT **
22510122-T-A 20348236-T-A DYZ19 **
23848692-A-G 21686806-A-G **
22430123-G-T 20268237-G-T DYZ19 **
22173654-C-A 20011768-C-A **
22166606-G-A 20004720-G-A **
22124544-C-A 19962658-C-A **
22056364-G-C 19894478-G-C **
21965725-T-C 19803839-T-C **
21948964-C-A 19787078-C-A **
21887237-T-G 19725351-T-G **
21875774-T-C 19713888-T-C **
21863824-G-A 19701938-G-A **
21863775-G-A 19701889-G-A **
23779694-G-T 21617808-G-T **
23886970-C-T 21725084-C-T **
21323512-C-A 19161626-C-A **
28513962-C-A 26367815-C-A **
10525-A-T **
56861811-TCA-T **
56858271-C-T **
56842492-A-G **
56830353-C-CATTCT **
56830273-C-CA **
28774433-A-C 26628286-A-C **
28729011-G-T 26582864-G-T **
28605426-C-G 26459279-C-G **
28581451-A-T 26435304-A-T **
28537076-A-G 26390929-A-G **
28500191-G-A 26354044-G-A **
24518152-C-A 22372005-C-A **
28500182-C-T 26354035-C-T **
28465086-C-A 26318939-C-A **
27712752-T-G 25566605-T-G P1_Y2 **
27576077-G-T 25429930-G-T P1_Y2 **
27535069-C-T 25388922-C-T P1_Y2 **
26928096-C-T 24781949-C-T P1_r3 **
26225747-T-TA 24079600-T-TA P1_Y1 **
25980189-A-ATAG 23834042-A-ATAG P1_Y1 **
25955965-C-T 23809818-C-T P1_Y1 **
25938224-C-A 23792077-C-A P1_Y1 **
25534728-T-C 23388581-T-C P1_gr1 **
24672663-A-G 22526516-A-G P3_b2 **
21353241-C-A 19191355-C-A **
21323468-C-T 19161582-C-T **
16648313-G-A 14536433-G-A **
17337650-G-A 15225770-G-A **
18728762-C-A 16616882-C-A **
18531023-AT-A 16419143-AT-A P6_Dst **
7041939-G-T 7173898-G-T **
18155718-T-C 16043838-T-C **
18155700-G-C 16043820-G-C **
17920849-G-A 15808969-G-A **
17834413-C-G 15722533-C-G **
17770452-TC-T 15658572-TC-T **
17735456-A-T 15623576-A-T **
17481089-G-C 15369209-G-C **
17346389-T-C 15234509-T-C **
17337638-A-G 15225758-A-G **
18901164-C-A 16789284-C-A **
17337622-T-A 15225742-T-A **
17337620-T-A 15225740-T-A **
17301260-AAGAAAAG-A 15189380-AAGAAAAG-A **
17257512-T-C 15145632-T-C **
17213279-T-C 15101399-T-C **
17135863-G-T 15023983-G-T **
17126082-C-T 15014202-C-T **
17081291-A-T 14969411-A-T **
16876956-C-A 14765076-C-A **
16709908-C-A 14598028-C-A **
16702187-C-T 14590307-C-T **
16700316-A-C 14588436-A-C **
18856224-C-T 16744344-C-T **
18984992-C-A 16873112-C-A **
21283191-C-A 19121305-C-A **
19948145-C-G 17836265-C-G P5_Prx **
21263627-C-A 19101741-C-A **
21154622-C-A 18992736-C-A **
20983050-T-A 18821164-T-A P4_Dst **
20759879-A-G 18597993-A-G P4_Prx **
20681593-A-AG 18519707-A-AG P4_Prx **
20579003-C-G 18417117-C-G P5_Dst **
20434760-A-AG 18272874-A-AG P5_Dst **
20391463-AT-A 18229577-AT-A P5_Dst 10×T**
20391410-A-AG 18229524-A-AG P5_Dst **
20334775-T-C 18172889-T-C P5_Dst **
19948158-C-T 17836278-C-T P5_Prx **
19948129-C-CT 17836249-C-CT P5_Prx **
19125225-T-C 17013345-T-C **
19948126-C-CTT 17836246-C-CTT P5_Prx **
19948123-C-T 17836243-C-T P5_Prx **
19948117-TCC-T 17836237-TCC-T P5_Prx **
19948114-C-T 17836234-C-T P5_Prx **
19948106-C-CT 17836226-C-CT P5_Prx **
19781313-T-C 17669433-T-C P5_Prx **
19741879-G-T 17629999-G-T P5_Prx **
19517491-C-A 17405611-C-A **
19496261-G-A 17384381-G-A **
19423702-T-C 17311822-T-C **
19302733-T-G 17190853-T-G **
19129085-C-A 17017205-C-A **
7061921-T-A 7193880-T-A **
5814226-A-T 5946185-A-T **
7039795-A-C 7171754-A-C **
13289062-C-A 11133386-C-A **
10944179-TCATTC-T **
10033906-C-A 10196297-C-A S13031 **
13902297-C-A 11781591-C-A **
28483562-C-A 26337415-C-A **
56841233-C-T **
56841231-G-A **
6881472-C-A 7013431-C-A **
7134702-C-A 7266661-C-A **
13457861-C-A 11302185-C-A **
19302723-G-T 17190843-G-T **
17770389-C-A 15658509-C-A **
22188965-C-A 20027079-C-A **
16481148-G-A 14369268-G-A **
4065178-C-A 4197137-C-A **
6786911-ATTTTT-A 6918870-ATTTTT-A 17×T**
14066967-C-A 11946261-C-A **
8078748-G-T 8210707-G-T **
20983058-A-AG 18821172-A-AG P4_Dst **
18121771-C-A 16009891-C-A **
7235172-G-T 7367131-G-T **
17920835-G-A 15808955-G-A MF1880 **
14000494-C-A 11879788-C-A **
13855608-C-A 11734902-C-A **
18053607-C-A 15941727-C-A **
6464924-C-A 6596883-C-A **
10988583-T-TA **
13527080-A-G 11371404-A-G **
10950484-T-TTCCAC **
10950481-C-G **
23831461-G-C 21669575-G-C **
16952839-C-A 14840959-C-A **
16719798-C-A 14607918-C-A **
6977566-T-C 7109525-T-C **
56858357-AAAG-A **
11670613-G-T **
19496254-A-G 17384374-A-G **
14510012-C-A 12398217-C-A **
7319023-C-A 7450982-C-A **
19168880-C-A 17057000-C-A **
15496935-C-A 13385055-C-A **
6976527-C-T 7108486-C-T **
9440433-C-A 9602824-C-A **
7033377-C-A 7165336-C-A **
17737797-C-T 15625917-C-T **
13195796-C-A 11040120-C-A **
10745245-C-A **
10999191-G-C **
3834286-G-GA 3966245-G-GA 10×A**
19463392-C-A 17351512-C-A **
20761028-A-C 18599142-A-C P4_Prx **
20634988-A-ATG 18473102-A-ATG P4_Prx **
19250721-C-G 17138841-C-G **
13934949-G-A 11814243-G-A **
10898342-C-T **
7534668-T-C 7666627-T-C **
27994689-A-AG 25848542-A-AG P1_Y2 **
9735605-GTTTTT-G 9897996-GTTTTT-G IR3_Prx 30×T**
10683356-G-A **
6434920-G-A 6566879-G-A **
16379172-T-C 14267292-T-C **
15626548-C-T 13514668-C-T **
10986768-A-G **
28545880-C-CA 26399733-C-CA 20×A**
19302771-G-T 17190891-G-T **
7717725-C-T 7849684-C-T A20845 **
22252031-G-A 20090145-G-A DYZ19 *****
16422613-C-A 14310733-C-A ****
23360835-G-T 21198949-G-T ****
18748787-C-A 16636907-C-A **
25533456-G-T 23387309-G-T P1_gr1 **
21553949-C-T 19392063-C-T Z4072 **
13928042-C-A 11807336-C-A Z10522 **
10012860-C-A 10175251-C-A **
19436764-G-GAGAAAGAAAGAA 17324884-G-GAGAAAGAAAGAA 12×AGAA**
22783078-C-A 20621192-C-A **
9440326-C-G 9602717-C-G **
9373571-C-A 9535962-C-A **
4527951-C-A 4659910-C-A **
22122957-C-A 19961071-C-A **
16997983-G-T 14886103-G-T **
21489004-C-A 19327118-C-A **
10986839-CTCCAT-C **
21367238-C-A 19205352-C-A **
10950464-C-T **
17337661-C-T 15225781-C-T **
7432389-C-A 7564348-C-A **
4537758-C-A 4669717-C-A **
13218790-C-A 11063114-C-A **
28479065-C-A 26332918-C-A **
11669594-C-A **
11022862-C-A **
14912987-C-A 12801054-C-A **
17952623-C-CTT 15840743-C-CTT 16×T**
5249700-C-A 5381659-C-A **
8679497-C-A 8811456-C-A **
11659362-C-A **
13860348-A-T 11739642-A-T **
14203430-CAA-C 12082724-CAA-C 23×A**
11027316-C-A **
19496257-T-C 17384377-T-C **
13855978-T-C 11735272-T-C **
3991896-C-A 4123855-C-A **
14040980-C-A 11920274-C-A **
3492024-C-A 3623983-C-A **
3987915-C-A 4119874-C-A **
4327907-C-A 4459866-C-A **
4326486-AT-A 4458445-AT-A **
4326452-G-T 4458411-G-T **
4325713-A-G 4457672-A-G **
4325701-A-G 4457660-A-G **
4235587-CA-C 4367546-CA-C **
4226124-G-T 4358083-G-T **
4197989-C-A 4329948-C-A **
4178101-C-A 4310060-C-A **
4055662-G-T 4187621-G-T **
3853609-C-A 3985568-C-A **
4557522-T-C 4689481-T-C **
3818139-C-A 3950098-C-A **
13804291-C-A 11683585-C-A **
3804339-C-T 3936298-C-T **
3758386-G-T 3890345-G-T **
3751857-A-T 3883816-A-T **
3732614-G-C 3864573-G-C **
3640780-T-C 3772739-T-C **
3622275-C-A 3754234-C-A **
3532283-C-A 3664242-C-A **
3473427-A-T 3605386-A-T **
3269565-G-T 3401524-G-T **
4540721-A-G 4672680-A-G **
4557532-A-G 4689491-A-G **
3219848-G-T 3351807-G-T **
5516483-A-T 5648442-A-T **
6922451-G-T 7054410-G-T **
6491897-C-A 6623856-C-A **
6463549-T-A 6595508-T-A **
6367760-C-T 6499719-C-T **
6191183-C-A 6323142-C-A IR3_Dst **
6144817-C-T 6276776-C-T IR3_Dst **
6139431-C-G 6271390-C-G IR3_Dst **
6066630-T-C 6198589-T-C **
6066613-G-T 6198572-G-T **
5953118-C-A 6085077-C-A **
26834687-AAGAG-A 24688540-AAGAG-A P1_g2 **
5459213-C-A 5591172-C-A **
4557553-T-C 4689512-T-C **
5449494-G-T 5581453-G-T **
5448624-C-T 5580583-C-T **
5426366-T-TC 5558325-T-TC **
5216365-C-A 5348324-C-A **
5205220-A-G 5337179-A-G **
5201109-A-C 5333068-A-C **
4968282-C-A 5100241-C-A **
4949181-G-GTT 5081140-G-GTT 12×T**
4803957-G-T 4935916-G-T **
4700358-C-A 4832317-C-A **
4557655-A-C 4689614-A-C **
3252580-G-A 3384539-G-A **
3818063-T-C 3950022-T-C **
3131835-G-C 3263794-G-C **
9942188-C-T 10104579-C-T **
13487742-C-CCCT 11332066-C-CCCT **
13487737-C-CGT 11332061-C-CGT **
17337651-C-A 15225771-C-A **
3158794-C-A 3290753-C-A **
16605272-A-C 14493392-A-C **
17481215-C-A 15369335-C-A **
3116433-C-A 3248392-C-A **
22783133-C-A 20621247-C-A **
28560230-C-A 26414083-C-A **
19563203-C-A 17451323-C-A **
10950444-C-CTCCAT **
10950386-C-T **
22537116-C-A 20375230-C-A **
10988575-C-T **
10004826-C-A 10167217-C-A **
17589098-C-A 15477218-C-A **
15785938-C-A 13674058-C-A **
19302702-C-T 17190822-C-T **
14992733-T-A 12880818-T-A **
7270310-G-T 7402269-G-T **
10950411-C-T **
14153073-A-G 12032367-A-G **
8399052-G-T 8531011-G-T **
3104984-C-A 3236943-C-A **
3048390-A-T 3180349-A-T **
2788506-C-A 2920465-C-A **
3093308-C-A 3225267-C-A **
17933863-C-A 15821983-C-A **
2697715-A-G 2829674-A-G **
22124147-C-A 19962261-C-A **
19302482-G-T 17190602-G-T **
19077182-A-G 16965302-A-G Y55322 **
22303508-A-G 20141622-A-G DYZ19 ******
25054595-G-A 22908448-G-A g1 ***
25049415-A-G 22903268-A-G g1 ***
25037624-T-C 22891477-T-C g1 ***
15346837-C-A 13234956-C-A ***
25014293-C-T 22868146-C-T g1 ***
24813785-T-C 22667638-T-C P3_b2 ***
24202170-G-A 22056023-G-A P3_b1 ***
24123310-C-A 21977163-C-A P3_b1 ***
22608329-T-TCA 20446443-T-TCA ***
22312887-C-G 20151001-C-G DYZ19 ***
22264496-G-C 20102610-G-C DYZ19 ******
10991351-C-A ***
10988557-T-A ***
22241482-T-A 20079596-T-A DYZ19 ***
20643391-T-C 18481505-T-C P4_Prx ***
25571977-C-A 23425830-C-A P1_gr1 ***
20035532-C-G 17923652-C-G P5_Prx ***
19903883-TC-T 17792003-TC-T P5_Prx ***
9234793-C-T 9397184-C-T ***
14757647-G-T 12645716-G-T ***
10890280-C-A ***
14986616-TTCTCTC-T,TTCTC 12874684-TTCTCTC-T,TTCTC 17×TC***
14986642-C-A 12874710-C-A ***
25736179-C-G 23590032-C-G P1_b3 ***
26699201-G-A 24553054-G-A P1_g2 ***
26058660-GA-G 23912513-GA-G P1_Y1 ***
21367824-C-A 19205938-C-A ***
13871306-C-A 11750600-C-A ***
10821835-T-C ***
22219055-C-A 20057169-C-A DYZ19 ***
17802274-C-T 15690394-C-T ***
16250655-C-CT 14138775-C-CT ***
10808984-ACTCCA-A,ACTCCT ***
22079190-C-A 19917304-C-A ***
56829995-G-A,T ***
14181421-T-C 12060715-T-C ***
14181426-T-A 12060720-T-A ***
4665478-C-A 4797437-C-A ***
18052568-ATTT-A,AT 15940688-ATTT-A,AT 16×T***
13938882-CAAAA-C 11818176-CAAAA-C 13×A***
26223573-A-G 24077426-A-G P1_Y1 ***
19385078-C-A 17273198-C-A ***
7991069-C-A 8123028-C-A ***
14390484-A-T 12269780-A-T ***
13571458-C-G 11415782-C-G ***
14484949-G-T 12364218-G-T ***
3640478-TCTTC-T,TCTTT 3772437-TCTTC-T,TCTTT ***
16428237-C-A 14316357-C-A ***
13474049-G-T 11318373-G-T ***
22179363-CAAA-C 20017477-CAAA-C 13×A***
21285132-G-A 19123246-G-A ***
15278736-T-TTTATA 13166825-T-TTTATA 6×TTATA***
10988544-C-G ***
31690-T-G ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

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