Tree Position

R-P312/S116 > Z40481 > ZZ11 > U152/S28 > ZZ45 > Z36/S206 > 6864992-A-G

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
411683
BigY2
411683
17992095-T-C 15880215-T-C P7_Prx Y***A*
26505626-C-G 24359479-C-G P1_Y1 ***A*
6221840-C-T 6353799-C-T IR3_Dst ***A*
19581935-C-T 17470055-C-T P5_Prx Y***A*
13490782-G-GA 11335106-G-GA 9×A+**
2799993-T-C 2931952-T-C Y44864 YY++
13868959-C-T 11748253-C-T 4×GAATG***+
18248688-T-C 16136808-T-C Y54462 Y++
13230023-A-G 11074347-A-G ++
9643647-A-T 9806038-A-T Y48443 IR3_Prx ++
9640615-G-C 9803006-G-C Y48437 IR3_Prx ++
18842415-G-T 16730535-G-T Y54968 YY++
9037080-C-G 9199471-C-G Y++
8141730-C-T 8273689-C-T Y46873 YY++
8068849-C-G 8200808-C-G Y46785 YY++
6894088-A-T 7026047-A-T Y45421 YY++
6834007-T-C 6965966-T-C YY++
19663-C-T +
2805858-A-G 2937817-A-G Y44871 YY++
18884515-C-T 16772635-C-T Y55007 YY++
24396696-G-T 22250549-G-T Y59751 Y++
19107852-TAG-T 16995972-TAG-T ++
15690804-T-C 13578924-T-C Y50999 YY++
21570332-C-T 19408446-C-T Y56927 YY++
21853455-C-T 19691569-C-T Y57289 YY++
22138670-C-T 19976784-C-T YY++
8203194-A-C 8335153-A-C Z35909 YY++
22460123-AG-A 20298237-AG-A DYZ19 ++
22487926-C-T 20326040-C-T DYZ19 ***+
22888594-G-A 20726708-G-A Y58413 YY++
22256640-G-T 20094754-G-T DYZ19 ++
21464187-G-GGAAA,GGAAAGAAAGAAA 19302301-G-GGAAA,GGAAAGAAAGAAA 12×GAAA*
22274824-T-G 20112938-T-G DYZ19 ****
15558466-A-G 13446586-A-G YY*
22312644-A-G 20150758-A-G DYZ19 ****
15558466-A-ATAGATAGG 13446586-A-ATAGATAGG ****
21397457-A-G 19235571-A-G M2336 Z4940 E475 YY****
21532835-G-A 19370949-G-A M2338 Z4944 F588 E477 YY****
21456883-A-G 19294997-A-G YY****
21533405-G-T 19371519-G-T M2097 Z1971 YY****
21389240-A-G 19227354-A-G Y3138 FGC13364 YY****
21333667-G-T 19171781-G-T Z4939 FGC14166 YY****
21223243-G-A 19061357-G-A M2091 YY****
13237635-C-T 11081959-C-T **
13194205-G-C 11038529-G-C **
10983416-C-T **
13550668-C-G 11394992-C-G **
13249287-A-T 11093611-A-T **
13271024-C-A 11115348-C-A **
13466495-T-C 11310819-T-C **
13474161-G-C 11318485-G-C **
13494056-A-T 11338380-A-T **
13520744-T-C 11365068-T-C **
10949593-C-A **
11037797-C-A **
10999889-C-CATTG **
11011420-G-T **
10999898-C-CGTG **
11027934-C-A **
11020273-C-T **
10999899-C-CTG **
11020107-A-T **
10999912-T-A **
10999913-C-A **
10999923-C-A **
10999945-A-C **
11004502-CA-C **
13542238-A-T 11386562-A-T **
35499-A-T **
13575598-C-T 11419922-C-T **
14050149-C-A 11929443-C-A **
14458201-C-A 12337474-C-A **
14421999-A-AC 12301274-A-AC **
14355179-C-A 12234474-C-A **
14293529-C-T 12172823-C-T Y49306 **
14273614-A-T 12152908-A-T **
14251689-C-A 12130983-C-A **
14188044-A-C 12067338-A-C **
14159653-A-G 12038947-A-G **
14146847-C-A 12026141-C-A **
14101266-T-C 11980560-T-C **
14067120-T-C 11946414-T-C **
14017399-T-C 11896693-T-C **
13601016-A-C 11445340-A-C **
13944559-G-T 11823853-G-T **
10949534-A-C **
13936130-A-T 11815424-A-T **
13935019-C-A 11814313-C-A **
13934068-C-A 11813362-C-A **
13887516-C-A 11766810-C-A **
13860016-A-T 11739310-A-T **
13859923-T-A 11739217-T-A **
13859914-G-GTTAGC 11739208-G-GTTAGC **
11671510-C-A **
11649030-G-A **
10949542-C-CCACTT **
10746705-C-A **
10937599-C-A **
8725202-T-C 8857161-T-C **
10059417-A-G 10221808-A-G **
10031302-C-A 10193693-C-A **
10023069-C-A 10185460-C-A **
10012929-C-A 10175320-C-A **
9990133-C-A 10152524-C-A **
9951062-CA-C 10113453-CA-C 9×A**
9907498-G-A 10069889-G-A **
9075996-C-A 9238387-C-A **
9032226-AT-A 9194617-AT-A **
9030279-G-A 9192670-G-A **
8978470-A-G 9140861-A-G F17609 **
8385279-C-A 8517238-C-A **
10627564-C-A **
8369915-G-T 8501874-G-T **
8369906-A-G 8501865-A-G **
8369879-A-G 8501838-A-G **
8214183-A-G 8346142-A-G **
8077594-A-G 8209553-A-G Y63077 **
7985888-T-A 8117847-T-A **
7861550-A-G 7993509-A-G **
7774922-A-T 7906881-A-T **
7753164-T-A 7885123-T-A **
7717747-T-C 7849706-T-C **
7705071-C-A 7837030-C-A **
10627551-C-A **
10660245-C-A **
10925840-C-A **
10814254-T-C **
10916269-T-A **
10904961-G-C **
10904109-T-G **
10882246-A-T **
10874170-C-A **
10866337-C-A **
10862883-A-G **
10835485-C-T **
10828214-T-C **
10827988-T-C **
10827039-CACTCT-C **
10813076-C-T **
10660282-C-A **
10784014-C-A **
10779731-T-C **
10777803-C-T **
10776769-T-A **
10767047-C-A **
14490978-C-A 12370247-C-A **
10686649-T-A **
10679061-C-A **
10677258-A-G **
10671048-T-A **
10671018-T-TCCCTTTTCATTTCACACCAC **
14467777-A-T 12347046-A-T **
15975255-C-G 13863375-C-G **
14492826-G-T 12381023-G-T **
21634824-C-A 19472938-C-A **
22836728-C-A 20674842-C-A **
22803985-T-A 20642099-T-A **
22782911-CA-C 20621025-CA-C **
22690145-G-C 20528259-G-C **
22642999-A-G 20481113-A-G **
22236239-T-G 20074353-T-G DYZ19 **
22188890-A-G 20027004-A-G **
22173559-C-A 20011673-C-A **
22173522-T-A 20011636-T-A **
21880886-CT-C 19719000-CT-C **
21435275-C-A 19273389-C-A **
23415308-GTA-G 21253422-GTA-G **
21382047-A-G 19220161-A-G **
21363090-CAAAAAA-C 19201204-CAAAAAA-C 16×A**
21022740-A-G 18860854-A-G P4_Dst **
20641712-C-A 18479826-C-A P4_Prx **
20641693-T-C 18479807-T-C P4_Prx **
20242383-A-G 18080497-A-G P5_Dst **
19894076-T-G 17782196-T-G P5_Prx **
19884482-A-G 17772602-A-G P5_Prx **
19663399-A-C 17551519-A-C P5_Prx **
19418325-A-G 17306445-A-G **
19393267-C-A 17281387-C-A **
23097066-A-T 20935180-A-T **
23418981-C-G 21257095-C-G **
18951407-C-A 16839527-C-A **
28672689-C-A 26526542-C-A **
56848361-G-T **
56847325-G-T **
56846827-G-C **
56844233-TA-T **
56842489-G-T **
56840477-C-A **
56827943-CCATTAAATTT-C **
56827938-C-A **
28815135-A-C 26668988-A-C **
28729361-C-A 26583214-C-A **
28725057-T-C 26578910-T-C **
28630953-G-C 26484806-G-C **
23569572-G-T 21407686-G-T **
28624542-C-A 26478395-C-A **
28620218-C-A 26474071-C-A **
28609344-C-CT 26463197-C-CT 10×T**
28608711-T-C 26462564-T-C **
28607721-C-A 26461574-C-A **
28543047-T-G 26396900-T-G **
28536957-A-T 26390810-A-T **
26565439-G-T 24419292-G-T P1_g2 **
26379433-A-G 24233286-A-G P1_Y1 **
24870045-G-A 22723898-G-A P3_b2 **
24013759-A-G 21867612-A-G **
18976553-C-A 16864673-C-A **
18905406-G-A 16793526-G-A **
14517595-C-A 12405796-C-A **
15400329-C-A 13288449-C-A **
16044541-C-A 13932661-C-A **
16033568-C-A 13921688-C-A **
16031041-G-C 13919161-G-C **
16030926-G-A 13919046-G-A **
7338105-C-A 7470064-C-A **
15870583-C-A 13758703-C-A FGC31259 **
15823730-G-T 13711850-G-T **
15756569-A-G 13644689-A-G **
15686779-T-C 13574899-T-C **
15497356-C-A 13385476-C-A **
15424613-G-T 13312733-G-T **
15290168-C-A 13178267-C-A **
16176787-C-A 14064907-C-A **
15233964-C-T 13122050-C-T **
15220981-A-G 13109067-A-G **
15179292-A-G 13067378-A-G **
15178752-G-T 13066838-G-T **
15173507-A-G 13061593-A-G **
15143504-C-A 13031591-C-A **
15122148-G-A 13010235-G-A **
15049905-C-T 12937996-C-T **
14612835-A-T 12501033-A-T **
14610600-G-A 12498802-G-A **
14550604-A-T 12438805-A-T **
16095296-A-G 13983416-A-G Y51468 **
16270476-G-T 14158596-G-T **
18368469-T-TAA 16256589-T-TAA P6_Prx **
17666893-C-A 15555013-C-A **
18190257-A-T 16078377-A-T **
18157402-C-T 16045522-C-T **
18080330-A-T 15968450-A-T **
18012484-T-A 15900604-T-A P7_Dst **
18012393-AAT-A 15900513-AAT-A P7_Dst **
17932578-G-T 15820698-G-T **
17920925-G-A 15809045-G-A **
17796947-A-C 15685067-A-C **
17796834-A-G 15684954-A-G **
17707396-AAAAG-A 15595516-AAAAG-A **
17702464-T-G 15590584-T-G **
17628357-C-A 15516477-C-A **
16274194-A-G 14162314-A-G **
17628339-T-C 15516459-T-C **
17440686-C-A 15328806-C-A **
17343058-C-T 15231178-C-T **
17030733-G-C 14918853-G-C **
16665639-C-A 14553759-C-A **
16645763-A-T 14533883-A-T **
16635985-T-A 14524105-T-A **
16619780-A-T 14507900-A-T **
16618868-C-A 14506988-C-A **
16592446-C-T 14480566-C-T **
16490876-G-T 14378996-G-T **
7645446-C-A 7777405-C-A **
6757820-CAAA-C 6889779-CAAA-C 13×A**
7294600-C-A 7426559-C-A **
18012483-A-T 15900603-A-T P7_Dst **
22520773-C-A 20358887-C-A **
9063673-C-A 9226064-C-A **
10940286-C-A **
15127828-C-CTT 13015915-C-CTT 11×T**
56828254-G-C **
7138400-T-TAA 7270359-T-TAA 11×A**
14605342-C-A 12493544-C-A **
11018769-C-A **
17831207-CTTTTT-C 15719327-CTTTTT-C 17×T**
10983491-C-G **
10826844-C-A **
10983490-C-A **
19302560-G-T 17190680-G-T **
10951958-C-A **
25963833-C-A 23817686-C-A P1_Y1 **
15533284-C-A 13421404-C-A **
22625032-C-A 20463146-C-A **
17527327-CATAT-C 15415447-CATAT-C 8×AT**
11017614-C-CAGTCA **
14448052-C-A 12327325-C-A **
13474736-G-A 11319060-G-A **
18627852-C-A 16515972-C-A **
13935914-C-A 11815208-C-A **
13461091-A-G 11305415-A-G **
5756102-G-T 5888061-G-T **
2674432-G-A 2806391-G-A **
11676997-C-A **
19293756-G-A 17181876-G-A **
15396535-C-A 13284655-C-A **
10988792-C-A **
22810708-C-A 20648822-C-A **
10909914-C-T **
6916025-C-A 7047984-C-A **
4968849-C-A 5100808-C-A **
10661084-C-A **
20570166-G-A 18408280-G-A P5_Dst **
5426125-C-A 5558084-C-A **
7235085-C-A 7367044-C-A **
5200143-C-A 5332102-C-A **
10794822-G-T **
7258870-T-G 7390829-T-G **
7138426-G-A 7270385-G-A **
6798812-TG-T 6930771-TG-T **
18455378-A-AG 16343498-A-AG P6_Dst **
10987031-C-A **
6918533-C-A 7050492-C-A **
13433230-C-A 11277554-C-A **
10778941-T-C **
16073020-C-A 13961140-C-A **
2683364-AT-A 2815323-AT-A **
22023201-CTTTTTTTTTT-C 19861315-CTTTTTTTTTT-C 20×T**
28620558-C-CA 26474411-C-CA 16×A**
6541012-C-A 6672971-C-A **
10895843-T-TTCAAC **
13394860-C-A 11239184-C-A **
11017588-C-T **
8671298-C-A 8803257-C-A **
4547802-C-A 4679761-C-A **
10691411-C-T **
24435646-TA-T 22289499-TA-T 9×A**
18736430-C-A 16624550-C-A Y54831 **
14076132-C-A 11955426-C-A **
15756247-C-A 13644367-C-A **
11017584-C-T **
14366743-C-A 12246038-C-A **
22236279-C-T 20074393-C-T DYZ19 **
10043125-GA-G 10205516-GA-G **
2817707-TACA-T 2949666-TACA-T **
22449025-G-T 20287139-G-T DYZ19 **
21880893-A-G 19719007-A-G **
10043116-A-G 10205507-A-G **
21427599-A-G 19265713-A-G M2265 Z4941 **
4585284-A-G 4717243-A-G **
7160586-CTT-C 7292545-CTT-C 15×T**
10987778-C-T **
10666747-GCCATT-G **
16786234-TTC-T 14674354-TTC-T **
21206979-C-A 19045093-C-A **
11668576-A-G **
3759272-C-A 3891231-C-A **
8218103-C-A 8350062-C-A **
10946165-G-T **
19071323-C-A 16959443-C-A **
10802345-C-A **
21438285-C-A 19276399-C-A **
9402742-C-A 9565133-C-A **
10985263-C-A **
13198786-C-A 11043110-C-A **
16905870-CAAAAA-C 14793990-CAAAAA-C 25×A**
7053966-C-A 7185925-C-A **
13461072-C-G 11305396-C-G **
14464344-T-A 12343617-T-A **
22884793-TG-T 20722907-TG-T **
6268768-A-AG 6400727-A-AG IR3_Dst **
5524916-C-A 5656875-C-A **
15264725-A-G 13152815-A-G **
10949560-T-A **
10841056-C-A **
10841042-C-T **
2683247-C-A 2815206-C-A **
14908426-C-A 12796493-C-A **
5287264-C-A 5419223-C-A **
5263404-C-G 5395363-C-G **
5713382-T-C 5845341-T-C **
5605750-C-A 5737709-C-A **
5518850-T-C 5650809-T-C **
5397665-T-G 5529624-T-G **
5316639-C-A 5448598-C-A **
5313504-T-C 5445463-T-C **
5313392-C-G 5445351-C-G **
2772738-C-A 2904697-C-A **
5266242-T-C 5398201-T-C **
5262234-C-A 5394193-C-A **
5781007-C-T 5912966-C-T **
5228615-GAT-G 5360574-GAT-G **
5219646-A-C 5351605-A-C **
5190751-A-G 5322710-A-G **
5105207-C-G 5237166-C-G **
5052583-C-A 5184542-C-A **
5034480-C-A 5166439-C-A **
5026885-T-C 5158844-T-C **
4985967-A-T 5117926-A-T **
6756029-A-G 6887988-A-G **
4778086-G-A 4910045-G-A **
5740938-G-T 5872897-G-T **
5781815-T-A 5913774-T-A **
4733938-C-T 4865897-C-T **
6125762-A-T 6257721-A-T **
6585237-T-C 6717196-T-C **
6475638-T-G 6607597-T-G **
6460591-C-A 6592550-C-A **
6367784-C-A 6499743-C-A **
6357913-G-T 6489872-G-T **
13474156-C-G 11318480-C-G **
6354088-T-A 6486047-T-A **
6243168-A-AC 6375127-A-AC IR3_Dst **
6202321-G-T 6334280-G-T IR3_Dst **
6027539-AT-A 6159498-AT-A 10×T**
5800459-C-A 5932418-C-A **
6930774-T-G 7062733-T-G **
6024636-A-T 6156595-A-T **
5977665-C-A 6109624-C-A **
6977470-C-G 7109429-C-G **
5977141-G-A 6109100-G-A **
5977086-A-T 6109045-A-T **
5969039-C-A 6100998-C-A **
5863572-C-A 5995531-C-A **
5818412-C-G 5950371-C-G **
5800693-A-G 5932652-A-G **
4757024-G-A 4888983-G-A **
4908220-C-A 5040179-C-A **
7116808-C-A 7248767-C-A **
3849231-C-G 3981190-C-G **
3178125-C-A 3310084-C-A **
3276123-C-A 3408082-C-A **
7043786-T-G 7175745-T-G **
3893412-T-C 4025371-T-C **
7044756-C-CT 7176715-C-CT **
4553790-C-T 4685749-C-T **
3336938-G-T 3468897-G-T **
3822234-C-A 3954193-C-A **
3345866-C-A 3477825-C-A **
3664003-A-G 3795962-A-G **
3660606-G-T 3792565-G-T **
3643911-G-T 3775870-G-T **
3592785-G-A 3724744-G-A **
3491806-T-A 3623765-T-A **
3346356-C-A 3478315-C-A **
7102427-C-G 7234386-C-G **
7116083-A-C 7248042-A-C **
3920910-G-T 4052869-G-T **
3930570-TA-T 4062529-TA-T **
3987170-C-T 4119129-C-T **
3995248-A-T 4127207-A-T **
2774805-G-C 2906764-G-C **
2792913-C-A 2924872-C-A **
2926600-A-C 3058559-A-C **
4533485-C-T 4665444-C-T **
4533467-T-G 4665426-T-G **
4426311-T-C 4558270-T-C **
4281963-T-A 4413922-T-A **
4277190-C-A 4409149-C-A FGC44278 **
2978478-T-C 3110437-T-C **
7166797-C-T 7298756-C-T **
4123981-A-G 4255940-A-G **
4120592-G-T 4252551-G-T **
4094548-G-T 4226507-G-T **
4088416-C-A 4220375-C-A **
4088378-G-T 4220337-G-T **
4062617-G-A 4194576-G-A **
21394950-G-A 19233064-G-A M2095 Z1970 ******
6832117-C-A 6964076-C-A ***
7250545-G-GGT 7382504-G-GGT 19×GT***
22240937-A-C 20079051-A-C BY28223 DYZ19 ***
22241070-G-A 20079184-G-A DYZ19 ***
26141401-C-G 23995254-C-G BY21468 P1_Y1 ***
22259167-A-T 20097281-A-T PF1841 DYZ19 ***
20641604-TGAGAGAGA-T 18479718-TGAGAGAGA-T P4_Prx 16×GA***
26797816-G-A 24651669-G-A P1_g2 ***
9313665-C-T 9476056-C-T ***
25017057-A-C 22870910-A-C g1 ***
13856359-A-T 11735653-A-T ***
24814194-A-C 22668047-A-C P3_b2 ***
24138710-T-C 21992563-T-C P3_b1 ***
22326864-G-T 20164978-G-T DYZ19 ***
22221486-G-A 20059600-G-A DYZ19 ***
22240572-T-A 20078686-T-A DYZ19 ***
22304013-T-A 20142127-T-A DYZ19 ***
11017613-C-G ***
2768040-A-G 2899999-A-G ***
23034293-CTTT-C,CT 20872407-CTTT-C,CT 15×T***
16424003-A-G 14312123-A-G ***
2840099-CAAAAAAAA-C,CAAAAAAA 2972058-CAAAAAAAA-C,CAAAAAAA 20×A***
2844149-GT-G,GTT 2976108-GT-G,GTT 16×T***
13880994-C-A 11760288-C-A ***
3329071-GCC-G 3461030-GCC-G ***
14529269-C-A 12417470-C-A ***
11643741-A-G ***
11643725-ATTGG-AATGG,T ***
15211106-G-T 13099192-G-T ***
15221442-C-A 13109528-C-A ***
3920803-C-A 4052762-C-A ***
3920803-C-CA 4052762-C-CA ***
4235961-C-A 4367920-C-A ***
16450527-A-AT 14338647-A-AT ***
23009578-A-T 20847692-A-T ***
2772582-C-A 2904541-C-A ***
11017636-A-T ***
16665874-C-A 14553994-C-A ***
16921960-C-A 14810080-C-A ***
13489629-CCACCCA-C,CCAATGA 11333953-CCACCCA-C,CCAATGA ***
18210270-ATTTTTT-A,ATTTTT 16098390-ATTTTTT-A,ATTTTT 18×T***
19073887-CACAT-C,CACAC 16962007-CACAT-C,CACAC ***
19187385-ATTTTTT-A,ATT 17075505-ATTTTTT-A,ATT 28×T***
8970811-G-T 9133202-G-T ***
10024056-G-GTC 10186447-G-GTC ***
21477811-AAAAG-A,AAAAGAAAG 19315925-AAAAG-A,AAAAGAAAG 14×AAAG***
21547859-C-CTGTGTG 19385973-C-CTGTGTG 17×TG***
21592634-TAA-T 19430748-TAA-T 14×A***
9955411-C-T 10117802-C-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

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