Lyons
FTDNA: 174609, BigY2: 174609Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | FTDNA 174609 | BigY2 174609 |
---|---|---|---|---|---|---|---|---|---|
20644036-C-G | 18482150-C-G | P4_Prx | *** | A* | |||||
20015239-T-C | 17903359-T-C | P5_Prx | *** | A* | |||||
24290487-G-A | 22144340-G-A | P3_t1 | *** | A* | |||||
20000823-A-C | 17888943-A-C | P5_Prx | *** | A* | |||||
22290124-C-G | 20128238-C-G | DYZ19 | *** | A* | |||||
17337420-T-C | 15225540-T-C | Y | Y | + | + | ||||
17863864-C-A | 15751984-C-A | Y | Y | + | + | ||||
17921807-A-G | 15809927-A-G | Y | Y | + | + | ||||
18162373-T-A | 16050493-T-A | Y | Y | + | + | ||||
18162374-C-A | 16050494-C-A | PR2742 | Y | Y | + | + | |||
19435907-C-T | 17324027-C-T | Y | Y | + | + | ||||
22120450-T-C | 19958564-T-C | Y | Y | + | + | ||||
21593990-T-C | 19432104-T-C | Y | Y | + | + | ||||
16391435-C-G | 14279555-C-G | Y | Y | + | + | ||||
22444596-A-T | 20282710-A-T | DYZ19 | + | + | |||||
22471590-G-T | 20309704-G-T | DYZ19 | + | + | |||||
22749237-T-G | 20587351-T-G | Y132819 | Y | Y | + | + | |||
22998129-G-T | 20836243-G-T | Y | Y | + | + | ||||
23156133-C-T | 20994247-C-T | Y | + | + | |||||
23380826-A-C | 21218940-A-C | Y | Y | + | + | ||||
23980435-G-A | 21834288-G-A | Y112560 | Y | + | + | ||||
16411542-T-A | 14299662-T-A | Y | Y | + | + | ||||
22749236-T-G | 20587350-T-G | Y132908 | Y | Y | + | + | |||
16350365-C-T | 14238485-C-T | Y | Y | + | + | ||||
6932657-A-G | 7064616-A-G | Y | Y | + | + | ||||
8482549-G-C | 8614508-G-C | BY12743 Z41210 | Y | Y | + | + | |||
8688236-A-T | 8820195-A-T | Y | Y | + | + | ||||
7633915-A-G | 7765874-A-G | Y | Y | + | + | ||||
15744305-G-A | 13632425-G-A | Y | Y | + | + | ||||
8966505-GGCAACATTTCT-G | 9128896-GGCAACATTTCT-G | + | |||||||
13659971-G-A | 11504295-G-A | + | + | ||||||
14032781-T-C | 11912075-T-C | Y | Y | + | + | ||||
8297550-A-C | 8429509-A-C | Y | Y | + | + | ||||
14419294-T-G | 12298569-T-G | Y | Y | + | + | ||||
14766792-G-A | 12654861-G-A | Y | Y | + | ** | ||||
2852759-G-A | 2984718-G-A | Y | Y | + | + | ||||
14877541-C-T | 12765611-C-T | Y | Y | + | + | ||||
15013376-C-T | 12901464-C-T | Y | Y | + | + | ||||
15085479-A-G | 12973569-A-G | Y | Y | + | + | ||||
22340422-C-T | 20178536-C-T | DYZ19 | *** | * | |||||
22227367-C-T | 20065481-C-T | DYZ19 | *** | * | |||||
13927155-C-A | 11806449-C-A | ** | |||||||
14721665-G-C | 12609733-G-C | ** | |||||||
14715894-A-C | 12603961-A-C | ** | |||||||
14686745-A-G | 12574811-A-G | ** | |||||||
14668246-C-A | 12556312-C-A | ** | |||||||
15080921-C-A | 12969011-C-A | ** | |||||||
15191233-C-A | 13079319-C-A | ** | |||||||
15424282-AAG-A | 13312402-AAG-A | ** | |||||||
14630404-G-A | 12518473-G-A | ** | |||||||
11658166-T-C | ** | ||||||||
14533407-C-A | 12421608-C-A | ** | |||||||
13866197-C-G | 11745491-C-G | ** | |||||||
15424591-C-G | 13312711-C-G | ** | |||||||
13902909-C-A | 11782203-C-A | ** | |||||||
14279603-C-A | 12158897-C-A | ** | |||||||
14007583-C-A | 11886877-C-A | ** | |||||||
14520952-C-A | 12409153-C-A | ** | |||||||
14518570-C-G | 12406771-C-G | ** | |||||||
14500022-C-A | 12388227-C-A | ** | |||||||
14358345-C-A | 12237640-C-A | ** | |||||||
14292635-A-G | 12171929-A-G | ** | |||||||
14278711-C-A | 12158005-C-A | ** | |||||||
14267058-T-C | 12146352-T-C | ** | |||||||
14247340-A-G | 12126634-A-G | ** | |||||||
14178159-C-A | 12057453-C-A | ** | |||||||
14168129-T-C | 12047423-T-C | ** | |||||||
15468448-G-T | 13356568-G-T | ** | |||||||
14168098-G-A | 12047392-G-A | ** | |||||||
14168091-G-C | 12047385-G-C | ** | |||||||
15432893-A-T | 13321013-A-T | ** | |||||||
56848664-G-T | ** | ||||||||
15536283-C-A | 13424403-C-A | ** | |||||||
16425710-C-A | 14313830-C-A | ** | |||||||
17224359-T-G | 15112479-T-G | ** | |||||||
17165412-C-A | 15053532-C-A | ** | |||||||
17088968-G-T | 14977088-G-T | ** | |||||||
16952581-C-A | 14840701-C-A | ** | |||||||
16828960-TGTCTACCAAAATACAAAAATTAACCAG-T | 14717080-TGTCTACCAAAATACAAAAATTAACCAG-T | ** | |||||||
16827448-A-T | 14715568-A-T | ** | |||||||
16784404-CAAAAA-C | 14672524-CAAAAA-C | 18×A | ** | ||||||
16705614-T-C | 14593734-T-C | ** | |||||||
16702822-T-G | 14590942-T-G | ** | |||||||
16673188-C-A | 14561308-C-A | ** | |||||||
16533233-TG-T | 14421353-TG-T | ** | |||||||
16522852-T-G | 14410972-T-G | ** | |||||||
16522779-C-T | 14410899-C-T | ** | |||||||
16336324-T-C | 14224444-T-C | ** | |||||||
15760725-C-G | 13648845-C-G | ** | |||||||
16272903-C-A | 14161023-C-A | ** | |||||||
13617582-GTCC-G | 11461906-GTCC-G | ** | |||||||
16266172-C-A | 14154292-C-A | ** | |||||||
16172038-A-AACAG | 14060158-A-AACAG | ** | |||||||
16121398-T-A | 14009518-T-A | P8_Prx | ** | ||||||
16121379-G-C | 14009499-G-C | P8_Prx | ** | ||||||
16121353-A-T | 14009473-A-T | P8_Prx | ** | ||||||
16050014-C-T | 13938134-C-T | ** | |||||||
16047091-C-A | 13935211-C-A | ** | |||||||
16046663-C-A | 13934783-C-A | ** | |||||||
16015782-T-C | 13903902-T-C | ** | |||||||
15798103-C-A | 13686223-C-A | ** | |||||||
15773456-T-A | 13661576-T-A | ** | |||||||
15761583-C-A | 13649703-C-A | ** | |||||||
13617588-G-A | 11461912-G-A | ** | |||||||
10937668-T-A | ** | ||||||||
13617572-C-T | 11461896-C-T | ** | |||||||
9591887-G-T | 9754278-G-T | IR3_Prx | ** | ||||||
10791675-C-A | ** | ||||||||
10778195-C-A | ** | ||||||||
10754741-AC-A | ** | ||||||||
10652568-C-A | ** | ||||||||
10624474-G-A | ** | ||||||||
10624446-C-T | ** | ||||||||
10059327-A-T | 10221718-A-T | ** | |||||||
10041067-C-A | 10203458-C-A | ** | |||||||
9998046-G-A | 10160437-G-A | ** | |||||||
9965884-C-A | 10128275-C-A | ** | |||||||
9953137-G-A | 10115528-G-A | ** | |||||||
9926724-C-A | 10089115-C-A | ** | |||||||
9824136-A-G | 9986527-A-G | ** | |||||||
9482443-G-T | 9644834-G-T | ** | |||||||
10799458-C-T | ** | ||||||||
9469754-A-T | 9632145-A-T | ** | |||||||
9462064-C-A | 9624455-C-A | ** | |||||||
9424597-GGAAAA-G | 9586988-GGAAAA-G | ** | |||||||
9040925-A-ACTATAT | 9203316-A-ACTATAT | 17×AT | ** | ||||||
8977029-C-T | 9139420-C-T | 16×A | ** | ||||||
8977002-G-C | 9139393-G-C | ** | |||||||
8913771-C-A | 9045730-C-A | ** | |||||||
8852088-C-A | 8984047-C-A | ** | |||||||
8811113-T-C | 8943072-T-C | ** | |||||||
8811104-C-T | 8943063-C-T | ** | |||||||
8790161-G-T | 8922120-G-T | ** | |||||||
8660300-T-G | 8792259-T-G | ** | |||||||
8214198-A-G | 8346157-A-G | ** | |||||||
10798887-C-A | ** | ||||||||
10799535-C-CGATCT | ** | ||||||||
13610806-C-A | 11455130-C-A | ** | |||||||
10952357-C-T | ** | ||||||||
13587554-C-A | 11431878-C-A | ** | |||||||
13576152-C-A | 11420476-C-A | ** | |||||||
13503938-G-A | 11348262-G-A | ** | |||||||
13463608-TGCCTC-T | 11307932-TGCCTC-T | ** | |||||||
13323491-C-A | 11167815-C-A | ** | |||||||
13297260-C-A | 11141584-C-A | ** | |||||||
13272696-A-G | 11117020-A-G | ** | |||||||
13272683-C-A | 11117007-C-A | ** | |||||||
13229867-C-A | 11074191-C-A | ** | |||||||
13228253-C-A | 11072577-C-A | ** | |||||||
10996788-C-A | ** | ||||||||
10963487-C-A | ** | ||||||||
10958260-A-G | ** | ||||||||
10950055-C-A | ** | ||||||||
10809469-T-A | ** | ||||||||
10949647-C-T | ** | ||||||||
10944813-A-AT | ** | ||||||||
10944812-C-G | ** | ||||||||
10944809-C-T | ** | ||||||||
17382330-C-A | 15270450-C-A | ** | |||||||
10890396-C-T | ** | ||||||||
10876975-C-A | ** | ||||||||
10868913-C-A | ** | ||||||||
10868381-TTCCACTCCAC-T | ** | ||||||||
10863023-A-G | ** | ||||||||
10831601-C-CTCCTG | ** | ||||||||
10823996-C-A | ** | ||||||||
10823179-C-T | ** | ||||||||
10815686-C-A | ** | ||||||||
17260278-C-A | 15148398-C-A | ** | |||||||
18933638-T-C | 16821758-T-C | ** | |||||||
17479068-A-G | 15367188-A-G | ** | |||||||
22972662-G-C | 20810776-G-C | ** | |||||||
24543319-A-AAGAGAC | 22397172-A-AAGAGAC | P3_t2 | ** | ||||||
24296457-A-ACAG | 22150310-A-ACAG | P3_t1 | ** | ||||||
24080286-A-G | 21934139-A-G | P3_b1 | ** | ||||||
23953013-G-T | 21806866-G-T | ** | |||||||
23882006-G-T | 21720120-G-T | ** | |||||||
23848527-C-A | 21686641-C-A | ** | |||||||
23364283-T-C | 21202397-T-C | ** | |||||||
23198774-T-C | 21036888-T-C | ** | |||||||
23062800-T-C | 20900914-T-C | ** | |||||||
22972690-T-A | 20810804-T-A | ** | |||||||
22972689-A-G | 20810803-A-G | ** | |||||||
22972673-G-C | 20810787-G-C | ** | |||||||
22972671-T-G | 20810785-T-G | ** | |||||||
22972661-C-G | 20810775-C-G | ** | |||||||
25959311-G-GGTCT | 23813164-G-GGTCT | P1_Y1 | ** | ||||||
22972652-G-A | 20810766-G-A | ** | |||||||
22972651-T-C | 20810765-T-C | ** | |||||||
22972646-A-C | 20810760-A-C | ** | |||||||
22972639-T-A | 20810753-T-A | ** | |||||||
22972623-A-G | 20810737-A-G | ** | |||||||
22972612-A-T | 20810726-A-T | ** | |||||||
22972604-G-A | 20810718-G-A | ** | |||||||
22972603-G-T | 20810717-G-T | ** | |||||||
22871552-A-G | 20709666-A-G | ** | |||||||
22810064-C-A | 20648178-C-A | ** | |||||||
22787060-C-A | 20625174-C-A | ** | |||||||
22766711-C-A | 20604825-C-A | ** | |||||||
22651123-C-A | 20489237-C-A | ** | |||||||
24579624-T-TTCTG | 22433477-T-TTCTG | P3_t2 | ** | ||||||
25985066-C-A | 23838919-C-A | P1_Y1 | ** | ||||||
22644802-C-T | 20482916-C-T | ** | |||||||
28542402-G-C | 26396255-G-C | ** | |||||||
56847157-C-G | ** | ||||||||
56835700-A-ATCCAC | ** | ||||||||
56706676-A-T | ** | ||||||||
56706664-C-A | ** | ||||||||
28802786-G-C | 26656639-G-C | ** | |||||||
28775416-C-A | 26629269-C-A | ** | |||||||
28755824-C-A | 26609677-C-A | ** | |||||||
28719948-A-G | 26573801-A-G | ** | |||||||
28645895-G-A | 26499748-G-A | ** | |||||||
28609439-C-A | 26463292-C-A | ** | |||||||
28607830-TG-T | 26461683-TG-T | ** | |||||||
28597917-A-C | 26451770-A-C | ** | |||||||
28555633-C-A | 26409486-C-A | ** | |||||||
28522004-C-A | 26375857-C-A | ** | |||||||
26206057-A-T | 24059910-A-T | P1_Y1 | ** | ||||||
28519773-T-C | 26373626-T-C | ** | |||||||
28484419-G-A | 26338272-G-A | ** | |||||||
28469560-C-A | 26323413-C-A | ** | |||||||
28426171-T-TAA | 26280024-T-TAA | P1_gr2 | ** | ||||||
28426168-TC-T | 26280021-TC-T | P1_gr2 | ** | ||||||
28426165-T-A | 26280018-T-A | P1_gr2 | ** | ||||||
28426164-C-T | 26280017-C-T | P1_gr2 | ** | ||||||
27971710-G-T | 25825563-G-T | P1_Y2 | ** | ||||||
27943887-C-CTCTG | 25797740-C-CTCTG | P1_Y2 | ** | ||||||
27807053-T-TACAG | 25660906-T-TACAG | P1_Y2 | ** | ||||||
27654063-G-T | 25507916-G-T | P1_Y2 | ** | ||||||
27603428-T-TTCTG | 25457281-T-TTCTG | P1_Y2 | ** | ||||||
26355346-C-A | 24209199-C-A | P1_Y1 | ** | ||||||
22644812-A-G | 20482926-A-G | ** | |||||||
22624492-T-C | 20462606-T-C | ** | |||||||
17534918-C-A | 15423038-C-A | ** | |||||||
18241904-A-T | 16130024-A-T | ** | |||||||
19759663-T-TACAG | 17647783-T-TACAG | P5_Prx | ** | ||||||
19429424-T-C | 17317544-T-C | ** | |||||||
19409964-GAATAAAAATATTT-G | 17298084-GAATAAAAATATTT-G | ** | |||||||
19376237-C-G | 17264357-C-G | ** | |||||||
19318155-T-G | 17206275-T-G | ** | |||||||
19302882-C-A | 17191002-C-A | ** | |||||||
19143163-C-T | 17031283-C-T | ** | |||||||
19138594-A-G | 17026714-A-G | ** | |||||||
19098142-A-G | 16986262-A-G | ** | |||||||
7990786-C-A | 8122745-C-A | ** | |||||||
18793680-G-T | 16681800-G-T | ** | |||||||
18792728-C-A | 16680848-C-A | ** | |||||||
18646411-T-A | 16534531-T-A | ** | |||||||
18189422-C-A | 16077542-C-A | ** | |||||||
20323889-T-TCTGTC | 18162003-T-TCTGTC | P5_Dst | ** | ||||||
18185356-C-A | 16073476-C-A | ** | |||||||
18185244-C-A | 16073364-C-A | ** | |||||||
18134745-A-C | 16022865-A-C | ** | |||||||
18134719-C-T | 16022839-C-T | ** | |||||||
18039397-G-TT | 15927517-G-TT | ** | |||||||
18036537-C-G | 15924657-C-G | ** | |||||||
17953791-T-C | 15841911-T-C | ** | |||||||
17946965-G-A | 15835085-G-A | ** | |||||||
17923474-T-A | 15811594-T-A | ** | |||||||
17914490-T-G | 15802610-T-G | ** | |||||||
17884661-T-C | 15772781-T-C | ** | |||||||
17804429-G-C | 15692549-G-C | ** | |||||||
17634590-G-T | 15522710-G-T | ** | |||||||
19982154-A-AAG | 17870274-A-AAG | P5_Prx | ** | ||||||
20454629-G-T | 18292743-G-T | P5_Dst | ** | ||||||
22624474-A-T | 20462588-A-T | ** | |||||||
21336374-A-T | 19174488-A-T | ** | |||||||
22613770-G-A | 20451884-G-A | ** | |||||||
22269220-C-G | 20107334-C-G | DYZ19 | ** | ||||||
22079834-T-C | 19917948-T-C | ** | |||||||
21991428-G-C | 19829542-G-C | ** | |||||||
21991415-C-T | 19829529-C-T | ** | |||||||
21991412-C-G | 19829526-C-G | ** | |||||||
21949823-C-A | 19787937-C-A | ** | |||||||
21949380-C-A | 19787494-C-A | ** | |||||||
21852573-G-T | 19690687-G-T | ** | |||||||
21791758-TC-T | 19629872-TC-T | ** | |||||||
21678096-G-T | 19516210-G-T | ** | |||||||
21624653-C-A | 19462767-C-A | ** | |||||||
21368572-T-A | 19206686-T-A | ** | |||||||
21296852-C-A | 19134966-C-A | ** | |||||||
20645525-A-G | 18483639-A-G | P4_Prx | ** | ||||||
21238210-T-C | 19076324-T-C | ** | |||||||
21225004-T-A | 19063118-T-A | ** | |||||||
21172072-A-G | 19010186-A-G | ** | |||||||
21172070-C-A | 19010184-C-A | ** | |||||||
21151887-C-A | 18990001-C-A | ** | |||||||
21078693-A-T | 18916807-A-T | ** | |||||||
21042463-G-T | 18880577-G-T | ** | |||||||
20969366-A-AGACAG | 18807480-A-AGACAG | P4_Dst | ** | ||||||
20969322-C-A | 18807436-C-A | P4_Dst | ** | ||||||
20952058-A-AGACAG | 18790172-A-AGACAG | P4_Dst | ** | ||||||
20778781-T-TTGTGTGTG | 18616895-T-TTGTGTGTG | P4_Prx | 18×TG | ** | |||||
20658346-T-TC | 18496460-T-TC | P4_Prx | ** | ||||||
20655122-C-A | 18493236-C-A | P4_Prx | ** | ||||||
20645549-T-A | 18483663-T-A | P4_Prx | ** | ||||||
8140539-CT-C | 8272498-CT-C | ** | |||||||
7248269-C-A | 7380228-C-A | ** | |||||||
7986061-T-TA | 8118020-T-TA | 8×A | ** | ||||||
16886984-C-A | 14775104-C-A | ** | |||||||
15761908-G-T | 13650028-G-T | ** | |||||||
15324089-C-A | 13212207-C-A | ** | |||||||
15636052-G-A | 13524172-G-A | ** | |||||||
10956705-G-A | ** | ||||||||
19449161-C-A | 17337281-C-A | ** | |||||||
8085359-G-T | 8217318-G-T | ** | |||||||
19155093-C-A | 17043213-C-A | ** | |||||||
28687936-A-G | 26541789-A-G | ** | |||||||
17014396-C-A | 14902516-C-A | ** | |||||||
14557418-C-A | 12445619-C-A | ** | |||||||
5190784-C-A | 5322743-C-A | ** | |||||||
10662146-G-C | ** | ||||||||
10887750-C-A | ** | ||||||||
5935750-C-A | 6067709-C-A | ** | |||||||
10799505-G-T | ** | ||||||||
14495709-C-A | 12383906-C-A | ** | |||||||
10673983-C-A | ** | ||||||||
13302359-G-A | 11146683-G-A | ** | |||||||
16490624-C-A | 14378744-C-A | ** | |||||||
7028584-C-A | 7160543-C-A | ** | |||||||
6097045-C-A | 6229004-C-A | ** | |||||||
10799488-C-A | ** | ||||||||
18242024-C-A | 16130144-C-A | ** | |||||||
5799779-C-A | 5931738-C-A | ** | |||||||
6125117-C-A | 6257076-C-A | ** | |||||||
22113700-C-A | 19951814-C-A | ** | |||||||
28699828-C-A | 26553681-C-A | ** | |||||||
6604340-G-T | 6736299-G-T | ** | |||||||
17014615-C-A | 14902735-C-A | ** | |||||||
10780879-G-T | ** | ||||||||
21211482-G-T | 19049596-G-T | Y56332 | ** | ||||||
10662934-C-A | ** | ||||||||
15011573-C-T | 12899661-C-T | ** | |||||||
4503174-G-T | 4635133-G-T | ** | |||||||
56847154-G-T | ** | ||||||||
10028331-C-A | 10190722-C-A | ** | |||||||
15044327-C-A | 12932417-C-A | ** | |||||||
4293578-C-A | 4425537-C-A | ** | |||||||
7645300-C-A | 7777259-C-A | ** | |||||||
16351944-G-T | 14240064-G-T | ** | |||||||
17884603-C-A | 15772723-C-A | ** | |||||||
16091268-C-A | 13979388-C-A | ** | |||||||
21409460-C-CA | 19247574-C-CA | 30×A | ** | ||||||
28574445-C-A | 26428298-C-A | ** | |||||||
15844716-C-A | 13732836-C-A | ** | |||||||
5535149-CTATA-C | 5667108-CTATA-C | 10×TA | ** | ||||||
14225710-C-A | 12105004-C-A | ** | |||||||
10992336-A-ACCCCG | ** | ||||||||
10653713-C-A | ** | ||||||||
7964806-C-A | 8096765-C-A | ** | |||||||
11001499-G-T | ** | ||||||||
14568056-C-A | 12456256-C-A | ** | |||||||
5605857-C-A | 5737816-C-A | ** | |||||||
20648582-GA-G | 18486696-GA-G | P4_Prx | ** | ||||||
7237929-C-T | 7369888-C-T | ** | |||||||
13576166-C-A | 11420490-C-A | ** | |||||||
21757335-A-G | ** | ||||||||
13487711-C-A | 11332035-C-A | ** | |||||||
10768542-C-T | ** | ||||||||
14539253-C-A | 12427454-C-A | ** | |||||||
16679430-C-A | 14567550-C-A | ** | |||||||
13255714-C-A | 11100038-C-A | ** | |||||||
15733645-C-A | 13621765-C-A | ** | |||||||
19155166-C-A | 17043286-C-A | ** | |||||||
10851143-T-G | ** | ||||||||
14562368-G-A | 12450568-G-A | ** | |||||||
6461561-C-A | 6593520-C-A | ** | |||||||
16052888-C-A | 13941008-C-A | ** | |||||||
15748058-G-T | 13636178-G-T | ** | |||||||
6916257-C-A | 7048216-C-A | ** | |||||||
56847156-A-C | ** | ||||||||
28519698-C-A | 26373551-C-A | ** | |||||||
10799534-C-T | ** | ||||||||
11658072-C-A | ** | ||||||||
10768578-G-A | ** | ||||||||
7160894-CTTT-C | 7292853-CTTT-C | 16×T | ** | ||||||
23476122-TA-T | 21314236-TA-T | ** | |||||||
7132045-C-A | 7264004-C-A | ** | |||||||
22765777-C-A | 20603891-C-A | ** | ** | ||||||
21068407-C-A | 18906521-C-A | ** | |||||||
28545210-C-A | 26399063-C-A | ** | |||||||
26386281-C-T | 24240134-C-T | P1_Y1 | ** | ||||||
17321175-T-G | 15209295-T-G | ** | |||||||
15114770-C-A | 13002857-C-A | ** | |||||||
19547529-A-G | 17435649-A-G | ** | |||||||
10684263-C-A | ** | ||||||||
9063627-C-A | 9226018-C-A | ** | |||||||
19831762-A-T | 17719882-A-T | P5_Prx | ** | ||||||
14914672-CTTTTTT-C | 12802739-CTTTTTT-C | 17×T | ** | ||||||
7252293-A-G | 7384252-A-G | ** | |||||||
18929969-C-A | 16818089-C-A | ** | |||||||
10624482-G-C | ** | ||||||||
7141962-C-G | 7273921-C-G | ** | |||||||
21602745-C-A | 19440859-C-A | ** | |||||||
16115541-T-G | 14003661-T-G | P8_Prx | ** | ||||||
5172158-C-A | 5304117-C-A | ** | |||||||
15740878-C-A | 13628998-C-A | ** | |||||||
10836568-C-A | ** | ||||||||
10799506-G-A | ** | ||||||||
23065304-C-A | 20903418-C-A | ** | |||||||
16516405-C-A | 14404525-C-A | ** | |||||||
10031300-C-A | 10193691-C-A | ** | |||||||
56847205-C-A | ** | ||||||||
7252301-C-CT | 7384260-C-CT | ** | |||||||
17446804-G-TT | 15334924-G-TT | ** | |||||||
5755182-C-A | 5887141-C-A | ** | |||||||
4351429-C-A | 4483388-C-A | ** | |||||||
18554356-C-A | 16442476-C-A | ** | |||||||
10992721-C-A | ** | ||||||||
13888589-G-T | 11767883-G-T | ** | |||||||
10799523-G-T | ** | ||||||||
19686890-G-GT | 17575010-G-GT | P5_Prx | ** | ||||||
8713119-C-A | 8845078-C-A | ** | |||||||
19318150-C-A | 17206270-C-A | BY34204 | ** | ||||||
21757341-C-G | ** | ||||||||
4840164-T-C | 4972123-T-C | ** | |||||||
5543134-A-G | 5675093-A-G | ** | |||||||
5542969-G-T | 5674928-G-T | ** | |||||||
5426571-C-G | 5558530-C-G | ** | |||||||
5266974-A-G | 5398933-A-G | ** | |||||||
5266894-C-A | 5398853-C-A | ** | |||||||
5264214-G-T | 5396173-G-T | ** | |||||||
5235804-C-T | 5367763-C-T | ** | |||||||
5235794-C-A | 5367753-C-A | ** | |||||||
5215584-C-A | 5347543-C-A | ** | |||||||
21757343-A-C | ** | ||||||||
5126413-T-G | 5258372-T-G | ** | |||||||
4777358-G-A | 4909317-G-A | ** | |||||||
5557389-A-ACAG | 5689348-A-ACAG | ** | |||||||
4634702-C-A | 4766661-C-A | ** | |||||||
4591551-C-A | 4723510-C-A | ** | |||||||
4554885-C-A | 4686844-C-A | ** | |||||||
4537539-G-T | 4669498-G-T | ** | |||||||
4469787-C-A | 4601746-C-A | ** | |||||||
4442880-T-C | 4574839-T-C | ** | |||||||
4328209-TA-T | 4460168-TA-T | ** | |||||||
4274671-C-T | 4406630-C-T | ** | |||||||
4244473-C-A | 4376432-C-A | ** | |||||||
4172475-C-T | 4304434-C-T | ** | |||||||
4172455-T-A | 4304414-T-A | ** | |||||||
4107855-G-A | 4239814-G-A | ** | |||||||
5554828-G-T | 5686787-G-T | ** | |||||||
5577496-C-A | 5709455-C-A | ** | |||||||
4066277-C-A | 4198236-C-A | ** | |||||||
6911288-T-G | 7043247-T-G | ** | |||||||
7886271-C-A | 8018230-C-A | ** | |||||||
7460990-A-G | 7592949-A-G | IR1_L | ** | ||||||
7418658-G-T | 7550617-G-T | ** | |||||||
7400199-G-C | 7532158-G-C | ** | |||||||
7288123-C-A | 7420082-C-A | ** | |||||||
7254035-G-A | 7385994-G-A | ** | |||||||
7252292-C-T | 7384251-C-T | ** | |||||||
7140888-TA-T | 7272847-TA-T | ** | |||||||
7098740-C-A | 7230699-C-A | ** | |||||||
7093692-C-A | 7225651-C-A | ** | |||||||
6984058-C-A | 7116017-C-A | ** | |||||||
6765857-A-C | 6897816-A-C | ** | |||||||
5610280-G-T | 5742239-G-T | ** | |||||||
6712701-G-T | 6844660-G-T | ** | |||||||
6663339-C-A | 6795298-C-A | ** | |||||||
6606515-G-T | 6738474-G-T | ** | |||||||
6596389-C-A | 6728348-C-A | ** | |||||||
6579773-T-C | 6711732-T-C | ** | |||||||
6559241-G-T | 6691200-G-T | ** | |||||||
6490662-G-A | 6622621-G-A | ** | |||||||
6460204-C-A | 6592163-C-A | ** | |||||||
6395052-C-T | 6527011-C-T | ** | |||||||
6368141-C-A | 6500100-C-A | ** | |||||||
5957676-T-C | 6089635-T-C | ** | |||||||
5635282-T-C | 5767241-T-C | ** | |||||||
4094187-A-G | 4226146-A-G | ** | |||||||
5170684-T-C | 5302643-T-C | ** | |||||||
13472213-C-CTCTT | 11316537-C-CTCTT | ** | |||||||
2758341-A-G | 2890300-A-G | ** | |||||||
3012565-T-A | 3144524-T-A | ** | |||||||
3012501-C-T | 3144460-C-T | ** | |||||||
2986498-AT-A | 3118457-AT-A | ** | |||||||
23066386-T-A | 20904500-T-A | ** | |||||||
2962350-G-A | 3094309-G-A | ** | |||||||
2960711-C-A | 3092670-C-A | ** | |||||||
3223286-C-A | 3355245-C-A | ** | |||||||
2950548-A-G | 3082507-A-G | ** | |||||||
2856710-C-A | 2988669-C-A | ** | |||||||
2788821-C-T | 2920780-C-T | ** | |||||||
17250946-C-A | 15139066-C-A | ** | |||||||
3110373-TCTCA-T | 3242332-TCTCA-T | ** | |||||||
22165164-C-A | 20003278-C-A | ** | |||||||
9764264-C-A | 9926655-C-A | ** | |||||||
7256215-G-T | 7388174-G-T | ** | |||||||
4889309-AATTG-A | 5021268-AATTG-A | ** | |||||||
21238218-C-A | 19076332-C-A | ** | |||||||
17013231-C-A | 14901351-C-A | ** | |||||||
11660228-G-A | ** | ||||||||
28460800-C-A | 26314653-C-A | ** | |||||||
18196052-C-T | 16084172-C-T | ** | |||||||
28774582-C-A | 26628435-C-A | ** | |||||||
3032459-C-A | 3164418-C-A | ** | |||||||
2962423-T-G | 3094382-T-G | ** | |||||||
3131916-C-A | 3263875-C-A | ** | |||||||
10862977-C-A | ** | ||||||||
3598888-T-A | 3730847-T-A | ** | |||||||
3517575-C-A | 3649534-C-A | ** | |||||||
3827326-C-A | 3959285-C-A | ** | |||||||
3388445-C-A | 3520404-C-A | ** | |||||||
3345788-T-TACAG | 3477747-T-TACAG | ** | |||||||
3616386-C-A | 3748345-C-A | ** | |||||||
3990930-G-A | 4122889-G-A | ** | |||||||
3829151-C-A | 3961110-C-A | ** | |||||||
28635044-C-A | 26488897-C-A | ** | |||||||
3286380-A-G | 3418339-A-G | ** | |||||||
3275631-C-A | 3407590-C-A | ** | |||||||
3219129-C-A | 3351088-C-A | ** | |||||||
3165503-G-T | 3297462-G-T | ** | |||||||
3625850-C-A | 3757809-C-A | ** | |||||||
27570822-C-A | 25424675-C-A | P1_Y2 | *** | ||||||
14286784-CTTTTTTT-C | 12166078-CTTTTTTT-C | 22×T | *** | ||||||
9963409-C-T | 10125800-C-T | *** | |||||||
26794872-G-A | 24648725-G-A | P1_g2 | *** | ||||||
26281700-A-G | 24135553-A-G | P1_Y1 | *** | ||||||
26162960-T-G | 24016813-T-G | P1_Y1 | *** | ||||||
25818023-C-T | 23671876-C-T | P1_b3 | *** | ||||||
25345556-C-G | 23199409-C-G | P2_r1 | *** | ||||||
25300616-G-A | 23154469-G-A | P2_r1 | *** | ||||||
26314753-GC-G | 24168606-GC-G | P1_Y1 | *** | ||||||
8215077-C-A | 8347036-C-A | *** | |||||||
25161130-G-A | 23014983-G-A | g1 | *** | ||||||
22511049-C-A | 20349163-C-A | DYZ19 | *** | ||||||
22433561-C-G | 20271675-C-G | DYZ19 | *** | *** | |||||
22448030-T-G | 20286144-T-G | DYZ19 | *** | ||||||
22368310-C-G | 20206424-C-G | DYZ19 | *** | ||||||
22365185-C-G | 20203299-C-G | DYZ19 | *** | ||||||
22511001-T-G | 20349115-T-G | DYZ19 | *** | ||||||
22511027-C-T | 20349141-C-T | DYZ19 | *** | ||||||
19939191-G-T | 17827311-G-T | P5_Prx | *** | ||||||
25061953-A-G | 22915806-A-G | g1 | *** | ||||||
18060338-A-C | 15948458-A-C | *** | *** | ||||||
8568465-G-GTT | 8700424-G-GTT | 22×T | *** | ||||||
58975363-G-C | 56829216-G-C | *** | |||||||
24166442-A-G | 22020295-A-G | P3_b1 | *** | ||||||
24712242-T-C | 22566095-T-C | P3_b2 | *** | ||||||
22419995-C-A | 20258109-C-A | DYZ19 | *** | ||||||
56833017-C-A | *** | ||||||||
13478208-C-G | 11322532-C-G | *** | |||||||
14717647-G-T | 12605715-G-T | *** | |||||||
15404329-GAA-G | 13292449-GAA-G | 13×A | *** | ||||||
9702833-C-A | 9865224-C-A | IR3_Prx | *** | ||||||
10889308-C-CATTAGTGTTT | *** | ||||||||
10889297-C-CCGTT | *** | ||||||||
16929563-C-A | 14817683-C-A | *** | |||||||
18893398-T-C | 16781518-T-C | *** | |||||||
18893378-TTATC-T | 16781498-TTATC-T | *** | |||||||
56832012-C-CCACTG | *** | ||||||||
18893382-C-G | 16781502-C-G | *** | |||||||
8760517-CTTTTTTTT-C,CTTTTTTT | 8892476-CTTTTTTTT-C,CTTTTTTT | 20×T | *** | ||||||
13866204-A-T | 11745498-A-T | *** | |||||||
13866217-A-T | 11745511-A-T | *** | |||||||
10940380-C-A | *** | ||||||||
16912545-C-A | 14800665-C-A | *** | |||||||
18060349-TATATGTAC-T | 15948469-TATATGTAC-T | *** | |||||||
22280993-T-G | 20119107-T-G | DYZ19 | *** | ||||||
13478196-G-T | 11322520-G-T | *** | |||||||
18838590-C-A | 16726710-C-A | *** | |||||||
17755835-C-A | 15643955-C-A | *** | |||||||
10776008-T-A | *** | ||||||||
10889299-A-AG | *** | ||||||||
10773635-C-A | *** | ||||||||
13478217-G-T | 11322541-G-T | *** | |||||||
9931725-G-A | 10094116-G-A | *** | |||||||
6714749-C-A | 6846708-C-A | *** | |||||||
56826262-C-A | *** | ||||||||
58976197-C-T | 56830050-C-T | *** | |||||||
15279032-AGGGATTGTGAGTGGAGATGCCCCTGATCTTTGACAAATCTCCTATTGGTGCTTGGAACC-A | 13167131-AGGGATTGTGAGTGGAGATGCCCCTGATCTTTGACAAATCTCCTATTGGTGCTTGGAACC-A | *** | |||||||
23373458-C-A | 21211572-C-A | *** | |||||||
23475512-C-T | 21313626-C-T | *** | |||||||
10934798-GG-G,GA | *** | ||||||||
22283604-G-C | 20121718-G-C | DYZ19 | *** | ||||||
22450271-GT-G | 20288385-GT-G | DYZ19 | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.
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