Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > Z195/S355 > Z198 > CTS4188 > S14445 > BY3254

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
174609
BigY2
174609
20644036-C-G 18482150-C-G P4_Prx ***A*
20015239-T-C 17903359-T-C P5_Prx ***A*
24290487-G-A 22144340-G-A P3_t1 ***A*
20000823-A-C 17888943-A-C P5_Prx ***A*
22290124-C-G 20128238-C-G DYZ19 ***A*
17337420-T-C 15225540-T-C YY++
17863864-C-A 15751984-C-A YY++
17921807-A-G 15809927-A-G YY++
18162373-T-A 16050493-T-A YY++
18162374-C-A 16050494-C-A PR2742 YY++
19435907-C-T 17324027-C-T YY++
22120450-T-C 19958564-T-C YY++
21593990-T-C 19432104-T-C YY++
16391435-C-G 14279555-C-G YY++
22444596-A-T 20282710-A-T DYZ19 ++
22471590-G-T 20309704-G-T DYZ19 ++
22749237-T-G 20587351-T-G Y132819 YY++
22998129-G-T 20836243-G-T YY++
23156133-C-T 20994247-C-T Y++
23380826-A-C 21218940-A-C YY++
23980435-G-A 21834288-G-A Y112560 Y++
16411542-T-A 14299662-T-A YY++
22749236-T-G 20587350-T-G Y132908 YY++
16350365-C-T 14238485-C-T YY++
6932657-A-G 7064616-A-G YY++
8482549-G-C 8614508-G-C BY12743 Z41210 YY++
8688236-A-T 8820195-A-T YY++
7633915-A-G 7765874-A-G YY++
15744305-G-A 13632425-G-A YY++
8966505-GGCAACATTTCT-G 9128896-GGCAACATTTCT-G +
13659971-G-A 11504295-G-A ++
14032781-T-C 11912075-T-C YY++
8297550-A-C 8429509-A-C YY++
14419294-T-G 12298569-T-G YY++
14766792-G-A 12654861-G-A YY+**
2852759-G-A 2984718-G-A YY++
14877541-C-T 12765611-C-T YY++
15013376-C-T 12901464-C-T YY++
15085479-A-G 12973569-A-G YY++
22340422-C-T 20178536-C-T DYZ19 ****
22227367-C-T 20065481-C-T DYZ19 ****
13927155-C-A 11806449-C-A **
14721665-G-C 12609733-G-C **
14715894-A-C 12603961-A-C **
14686745-A-G 12574811-A-G **
14668246-C-A 12556312-C-A **
15080921-C-A 12969011-C-A **
15191233-C-A 13079319-C-A **
15424282-AAG-A 13312402-AAG-A **
14630404-G-A 12518473-G-A **
11658166-T-C **
14533407-C-A 12421608-C-A **
13866197-C-G 11745491-C-G **
15424591-C-G 13312711-C-G **
13902909-C-A 11782203-C-A **
14279603-C-A 12158897-C-A **
14007583-C-A 11886877-C-A **
14520952-C-A 12409153-C-A **
14518570-C-G 12406771-C-G **
14500022-C-A 12388227-C-A **
14358345-C-A 12237640-C-A **
14292635-A-G 12171929-A-G **
14278711-C-A 12158005-C-A **
14267058-T-C 12146352-T-C **
14247340-A-G 12126634-A-G **
14178159-C-A 12057453-C-A **
14168129-T-C 12047423-T-C **
15468448-G-T 13356568-G-T **
14168098-G-A 12047392-G-A **
14168091-G-C 12047385-G-C **
15432893-A-T 13321013-A-T **
56848664-G-T **
15536283-C-A 13424403-C-A **
16425710-C-A 14313830-C-A **
17224359-T-G 15112479-T-G **
17165412-C-A 15053532-C-A **
17088968-G-T 14977088-G-T **
16952581-C-A 14840701-C-A **
16828960-TGTCTACCAAAATACAAAAATTAACCAG-T 14717080-TGTCTACCAAAATACAAAAATTAACCAG-T **
16827448-A-T 14715568-A-T **
16784404-CAAAAA-C 14672524-CAAAAA-C 18×A**
16705614-T-C 14593734-T-C **
16702822-T-G 14590942-T-G **
16673188-C-A 14561308-C-A **
16533233-TG-T 14421353-TG-T **
16522852-T-G 14410972-T-G **
16522779-C-T 14410899-C-T **
16336324-T-C 14224444-T-C **
15760725-C-G 13648845-C-G **
16272903-C-A 14161023-C-A **
13617582-GTCC-G 11461906-GTCC-G **
16266172-C-A 14154292-C-A **
16172038-A-AACAG 14060158-A-AACAG **
16121398-T-A 14009518-T-A P8_Prx **
16121379-G-C 14009499-G-C P8_Prx **
16121353-A-T 14009473-A-T P8_Prx **
16050014-C-T 13938134-C-T **
16047091-C-A 13935211-C-A **
16046663-C-A 13934783-C-A **
16015782-T-C 13903902-T-C **
15798103-C-A 13686223-C-A **
15773456-T-A 13661576-T-A **
15761583-C-A 13649703-C-A **
13617588-G-A 11461912-G-A **
10937668-T-A **
13617572-C-T 11461896-C-T **
9591887-G-T 9754278-G-T IR3_Prx **
10791675-C-A **
10778195-C-A **
10754741-AC-A **
10652568-C-A **
10624474-G-A **
10624446-C-T **
10059327-A-T 10221718-A-T **
10041067-C-A 10203458-C-A **
9998046-G-A 10160437-G-A **
9965884-C-A 10128275-C-A **
9953137-G-A 10115528-G-A **
9926724-C-A 10089115-C-A **
9824136-A-G 9986527-A-G **
9482443-G-T 9644834-G-T **
10799458-C-T **
9469754-A-T 9632145-A-T **
9462064-C-A 9624455-C-A **
9424597-GGAAAA-G 9586988-GGAAAA-G **
9040925-A-ACTATAT 9203316-A-ACTATAT 17×AT**
8977029-C-T 9139420-C-T 16×A**
8977002-G-C 9139393-G-C **
8913771-C-A 9045730-C-A **
8852088-C-A 8984047-C-A **
8811113-T-C 8943072-T-C **
8811104-C-T 8943063-C-T **
8790161-G-T 8922120-G-T **
8660300-T-G 8792259-T-G **
8214198-A-G 8346157-A-G **
10798887-C-A **
10799535-C-CGATCT **
13610806-C-A 11455130-C-A **
10952357-C-T **
13587554-C-A 11431878-C-A **
13576152-C-A 11420476-C-A **
13503938-G-A 11348262-G-A **
13463608-TGCCTC-T 11307932-TGCCTC-T **
13323491-C-A 11167815-C-A **
13297260-C-A 11141584-C-A **
13272696-A-G 11117020-A-G **
13272683-C-A 11117007-C-A **
13229867-C-A 11074191-C-A **
13228253-C-A 11072577-C-A **
10996788-C-A **
10963487-C-A **
10958260-A-G **
10950055-C-A **
10809469-T-A **
10949647-C-T **
10944813-A-AT **
10944812-C-G **
10944809-C-T **
17382330-C-A 15270450-C-A **
10890396-C-T **
10876975-C-A **
10868913-C-A **
10868381-TTCCACTCCAC-T **
10863023-A-G **
10831601-C-CTCCTG **
10823996-C-A **
10823179-C-T **
10815686-C-A **
17260278-C-A 15148398-C-A **
18933638-T-C 16821758-T-C **
17479068-A-G 15367188-A-G **
22972662-G-C 20810776-G-C **
24543319-A-AAGAGAC 22397172-A-AAGAGAC P3_t2 **
24296457-A-ACAG 22150310-A-ACAG P3_t1 **
24080286-A-G 21934139-A-G P3_b1 **
23953013-G-T 21806866-G-T **
23882006-G-T 21720120-G-T **
23848527-C-A 21686641-C-A **
23364283-T-C 21202397-T-C **
23198774-T-C 21036888-T-C **
23062800-T-C 20900914-T-C **
22972690-T-A 20810804-T-A **
22972689-A-G 20810803-A-G **
22972673-G-C 20810787-G-C **
22972671-T-G 20810785-T-G **
22972661-C-G 20810775-C-G **
25959311-G-GGTCT 23813164-G-GGTCT P1_Y1 **
22972652-G-A 20810766-G-A **
22972651-T-C 20810765-T-C **
22972646-A-C 20810760-A-C **
22972639-T-A 20810753-T-A **
22972623-A-G 20810737-A-G **
22972612-A-T 20810726-A-T **
22972604-G-A 20810718-G-A **
22972603-G-T 20810717-G-T **
22871552-A-G 20709666-A-G **
22810064-C-A 20648178-C-A **
22787060-C-A 20625174-C-A **
22766711-C-A 20604825-C-A **
22651123-C-A 20489237-C-A **
24579624-T-TTCTG 22433477-T-TTCTG P3_t2 **
25985066-C-A 23838919-C-A P1_Y1 **
22644802-C-T 20482916-C-T **
28542402-G-C 26396255-G-C **
56847157-C-G **
56835700-A-ATCCAC **
56706676-A-T **
56706664-C-A **
28802786-G-C 26656639-G-C **
28775416-C-A 26629269-C-A **
28755824-C-A 26609677-C-A **
28719948-A-G 26573801-A-G **
28645895-G-A 26499748-G-A **
28609439-C-A 26463292-C-A **
28607830-TG-T 26461683-TG-T **
28597917-A-C 26451770-A-C **
28555633-C-A 26409486-C-A **
28522004-C-A 26375857-C-A **
26206057-A-T 24059910-A-T P1_Y1 **
28519773-T-C 26373626-T-C **
28484419-G-A 26338272-G-A **
28469560-C-A 26323413-C-A **
28426171-T-TAA 26280024-T-TAA P1_gr2 **
28426168-TC-T 26280021-TC-T P1_gr2 **
28426165-T-A 26280018-T-A P1_gr2 **
28426164-C-T 26280017-C-T P1_gr2 **
27971710-G-T 25825563-G-T P1_Y2 **
27943887-C-CTCTG 25797740-C-CTCTG P1_Y2 **
27807053-T-TACAG 25660906-T-TACAG P1_Y2 **
27654063-G-T 25507916-G-T P1_Y2 **
27603428-T-TTCTG 25457281-T-TTCTG P1_Y2 **
26355346-C-A 24209199-C-A P1_Y1 **
22644812-A-G 20482926-A-G **
22624492-T-C 20462606-T-C **
17534918-C-A 15423038-C-A **
18241904-A-T 16130024-A-T **
19759663-T-TACAG 17647783-T-TACAG P5_Prx **
19429424-T-C 17317544-T-C **
19409964-GAATAAAAATATTT-G 17298084-GAATAAAAATATTT-G **
19376237-C-G 17264357-C-G **
19318155-T-G 17206275-T-G **
19302882-C-A 17191002-C-A **
19143163-C-T 17031283-C-T **
19138594-A-G 17026714-A-G **
19098142-A-G 16986262-A-G **
7990786-C-A 8122745-C-A **
18793680-G-T 16681800-G-T **
18792728-C-A 16680848-C-A **
18646411-T-A 16534531-T-A **
18189422-C-A 16077542-C-A **
20323889-T-TCTGTC 18162003-T-TCTGTC P5_Dst **
18185356-C-A 16073476-C-A **
18185244-C-A 16073364-C-A **
18134745-A-C 16022865-A-C **
18134719-C-T 16022839-C-T **
18039397-G-TT 15927517-G-TT **
18036537-C-G 15924657-C-G **
17953791-T-C 15841911-T-C **
17946965-G-A 15835085-G-A **
17923474-T-A 15811594-T-A **
17914490-T-G 15802610-T-G **
17884661-T-C 15772781-T-C **
17804429-G-C 15692549-G-C **
17634590-G-T 15522710-G-T **
19982154-A-AAG 17870274-A-AAG P5_Prx **
20454629-G-T 18292743-G-T P5_Dst **
22624474-A-T 20462588-A-T **
21336374-A-T 19174488-A-T **
22613770-G-A 20451884-G-A **
22269220-C-G 20107334-C-G DYZ19 **
22079834-T-C 19917948-T-C **
21991428-G-C 19829542-G-C **
21991415-C-T 19829529-C-T **
21991412-C-G 19829526-C-G **
21949823-C-A 19787937-C-A **
21949380-C-A 19787494-C-A **
21852573-G-T 19690687-G-T **
21791758-TC-T 19629872-TC-T **
21678096-G-T 19516210-G-T **
21624653-C-A 19462767-C-A **
21368572-T-A 19206686-T-A **
21296852-C-A 19134966-C-A **
20645525-A-G 18483639-A-G P4_Prx **
21238210-T-C 19076324-T-C **
21225004-T-A 19063118-T-A **
21172072-A-G 19010186-A-G **
21172070-C-A 19010184-C-A **
21151887-C-A 18990001-C-A **
21078693-A-T 18916807-A-T **
21042463-G-T 18880577-G-T **
20969366-A-AGACAG 18807480-A-AGACAG P4_Dst **
20969322-C-A 18807436-C-A P4_Dst **
20952058-A-AGACAG 18790172-A-AGACAG P4_Dst **
20778781-T-TTGTGTGTG 18616895-T-TTGTGTGTG P4_Prx 18×TG**
20658346-T-TC 18496460-T-TC P4_Prx **
20655122-C-A 18493236-C-A P4_Prx **
20645549-T-A 18483663-T-A P4_Prx **
8140539-CT-C 8272498-CT-C **
7248269-C-A 7380228-C-A **
7986061-T-TA 8118020-T-TA 8×A**
16886984-C-A 14775104-C-A **
15761908-G-T 13650028-G-T **
15324089-C-A 13212207-C-A **
15636052-G-A 13524172-G-A **
10956705-G-A **
19449161-C-A 17337281-C-A **
8085359-G-T 8217318-G-T **
19155093-C-A 17043213-C-A **
28687936-A-G 26541789-A-G **
17014396-C-A 14902516-C-A **
14557418-C-A 12445619-C-A **
5190784-C-A 5322743-C-A **
10662146-G-C **
10887750-C-A **
5935750-C-A 6067709-C-A **
10799505-G-T **
14495709-C-A 12383906-C-A **
10673983-C-A **
13302359-G-A 11146683-G-A **
16490624-C-A 14378744-C-A **
7028584-C-A 7160543-C-A **
6097045-C-A 6229004-C-A **
10799488-C-A **
18242024-C-A 16130144-C-A **
5799779-C-A 5931738-C-A **
6125117-C-A 6257076-C-A **
22113700-C-A 19951814-C-A **
28699828-C-A 26553681-C-A **
6604340-G-T 6736299-G-T **
17014615-C-A 14902735-C-A **
10780879-G-T **
21211482-G-T 19049596-G-T Y56332 **
10662934-C-A **
15011573-C-T 12899661-C-T **
4503174-G-T 4635133-G-T **
56847154-G-T **
10028331-C-A 10190722-C-A **
15044327-C-A 12932417-C-A **
4293578-C-A 4425537-C-A **
7645300-C-A 7777259-C-A **
16351944-G-T 14240064-G-T **
17884603-C-A 15772723-C-A **
16091268-C-A 13979388-C-A **
21409460-C-CA 19247574-C-CA 30×A**
28574445-C-A 26428298-C-A **
15844716-C-A 13732836-C-A **
5535149-CTATA-C 5667108-CTATA-C 10×TA**
14225710-C-A 12105004-C-A **
10992336-A-ACCCCG **
10653713-C-A **
7964806-C-A 8096765-C-A **
11001499-G-T **
14568056-C-A 12456256-C-A **
5605857-C-A 5737816-C-A **
20648582-GA-G 18486696-GA-G P4_Prx **
7237929-C-T 7369888-C-T **
13576166-C-A 11420490-C-A **
21757335-A-G **
13487711-C-A 11332035-C-A **
10768542-C-T **
14539253-C-A 12427454-C-A **
16679430-C-A 14567550-C-A **
13255714-C-A 11100038-C-A **
15733645-C-A 13621765-C-A **
19155166-C-A 17043286-C-A **
10851143-T-G **
14562368-G-A 12450568-G-A **
6461561-C-A 6593520-C-A **
16052888-C-A 13941008-C-A **
15748058-G-T 13636178-G-T **
6916257-C-A 7048216-C-A **
56847156-A-C **
28519698-C-A 26373551-C-A **
10799534-C-T **
11658072-C-A **
10768578-G-A **
7160894-CTTT-C 7292853-CTTT-C 16×T**
23476122-TA-T 21314236-TA-T **
7132045-C-A 7264004-C-A **
22765777-C-A 20603891-C-A ****
21068407-C-A 18906521-C-A **
28545210-C-A 26399063-C-A **
26386281-C-T 24240134-C-T P1_Y1 **
17321175-T-G 15209295-T-G **
15114770-C-A 13002857-C-A **
19547529-A-G 17435649-A-G **
10684263-C-A **
9063627-C-A 9226018-C-A **
19831762-A-T 17719882-A-T P5_Prx **
14914672-CTTTTTT-C 12802739-CTTTTTT-C 17×T**
7252293-A-G 7384252-A-G **
18929969-C-A 16818089-C-A **
10624482-G-C **
7141962-C-G 7273921-C-G **
21602745-C-A 19440859-C-A **
16115541-T-G 14003661-T-G P8_Prx **
5172158-C-A 5304117-C-A **
15740878-C-A 13628998-C-A **
10836568-C-A **
10799506-G-A **
23065304-C-A 20903418-C-A **
16516405-C-A 14404525-C-A **
10031300-C-A 10193691-C-A **
56847205-C-A **
7252301-C-CT 7384260-C-CT **
17446804-G-TT 15334924-G-TT **
5755182-C-A 5887141-C-A **
4351429-C-A 4483388-C-A **
18554356-C-A 16442476-C-A **
10992721-C-A **
13888589-G-T 11767883-G-T **
10799523-G-T **
19686890-G-GT 17575010-G-GT P5_Prx **
8713119-C-A 8845078-C-A **
19318150-C-A 17206270-C-A BY34204 **
21757341-C-G **
4840164-T-C 4972123-T-C **
5543134-A-G 5675093-A-G **
5542969-G-T 5674928-G-T **
5426571-C-G 5558530-C-G **
5266974-A-G 5398933-A-G **
5266894-C-A 5398853-C-A **
5264214-G-T 5396173-G-T **
5235804-C-T 5367763-C-T **
5235794-C-A 5367753-C-A **
5215584-C-A 5347543-C-A **
21757343-A-C **
5126413-T-G 5258372-T-G **
4777358-G-A 4909317-G-A **
5557389-A-ACAG 5689348-A-ACAG **
4634702-C-A 4766661-C-A **
4591551-C-A 4723510-C-A **
4554885-C-A 4686844-C-A **
4537539-G-T 4669498-G-T **
4469787-C-A 4601746-C-A **
4442880-T-C 4574839-T-C **
4328209-TA-T 4460168-TA-T **
4274671-C-T 4406630-C-T **
4244473-C-A 4376432-C-A **
4172475-C-T 4304434-C-T **
4172455-T-A 4304414-T-A **
4107855-G-A 4239814-G-A **
5554828-G-T 5686787-G-T **
5577496-C-A 5709455-C-A **
4066277-C-A 4198236-C-A **
6911288-T-G 7043247-T-G **
7886271-C-A 8018230-C-A **
7460990-A-G 7592949-A-G IR1_L **
7418658-G-T 7550617-G-T **
7400199-G-C 7532158-G-C **
7288123-C-A 7420082-C-A **
7254035-G-A 7385994-G-A **
7252292-C-T 7384251-C-T **
7140888-TA-T 7272847-TA-T **
7098740-C-A 7230699-C-A **
7093692-C-A 7225651-C-A **
6984058-C-A 7116017-C-A **
6765857-A-C 6897816-A-C **
5610280-G-T 5742239-G-T **
6712701-G-T 6844660-G-T **
6663339-C-A 6795298-C-A **
6606515-G-T 6738474-G-T **
6596389-C-A 6728348-C-A **
6579773-T-C 6711732-T-C **
6559241-G-T 6691200-G-T **
6490662-G-A 6622621-G-A **
6460204-C-A 6592163-C-A **
6395052-C-T 6527011-C-T **
6368141-C-A 6500100-C-A **
5957676-T-C 6089635-T-C **
5635282-T-C 5767241-T-C **
4094187-A-G 4226146-A-G **
5170684-T-C 5302643-T-C **
13472213-C-CTCTT 11316537-C-CTCTT **
2758341-A-G 2890300-A-G **
3012565-T-A 3144524-T-A **
3012501-C-T 3144460-C-T **
2986498-AT-A 3118457-AT-A **
23066386-T-A 20904500-T-A **
2962350-G-A 3094309-G-A **
2960711-C-A 3092670-C-A **
3223286-C-A 3355245-C-A **
2950548-A-G 3082507-A-G **
2856710-C-A 2988669-C-A **
2788821-C-T 2920780-C-T **
17250946-C-A 15139066-C-A **
3110373-TCTCA-T 3242332-TCTCA-T **
22165164-C-A 20003278-C-A **
9764264-C-A 9926655-C-A **
7256215-G-T 7388174-G-T **
4889309-AATTG-A 5021268-AATTG-A **
21238218-C-A 19076332-C-A **
17013231-C-A 14901351-C-A **
11660228-G-A **
28460800-C-A 26314653-C-A **
18196052-C-T 16084172-C-T **
28774582-C-A 26628435-C-A **
3032459-C-A 3164418-C-A **
2962423-T-G 3094382-T-G **
3131916-C-A 3263875-C-A **
10862977-C-A **
3598888-T-A 3730847-T-A **
3517575-C-A 3649534-C-A **
3827326-C-A 3959285-C-A **
3388445-C-A 3520404-C-A **
3345788-T-TACAG 3477747-T-TACAG **
3616386-C-A 3748345-C-A **
3990930-G-A 4122889-G-A **
3829151-C-A 3961110-C-A **
28635044-C-A 26488897-C-A **
3286380-A-G 3418339-A-G **
3275631-C-A 3407590-C-A **
3219129-C-A 3351088-C-A **
3165503-G-T 3297462-G-T **
3625850-C-A 3757809-C-A **
27570822-C-A 25424675-C-A P1_Y2 ***
14286784-CTTTTTTT-C 12166078-CTTTTTTT-C 22×T***
9963409-C-T 10125800-C-T ***
26794872-G-A 24648725-G-A P1_g2 ***
26281700-A-G 24135553-A-G P1_Y1 ***
26162960-T-G 24016813-T-G P1_Y1 ***
25818023-C-T 23671876-C-T P1_b3 ***
25345556-C-G 23199409-C-G P2_r1 ***
25300616-G-A 23154469-G-A P2_r1 ***
26314753-GC-G 24168606-GC-G P1_Y1 ***
8215077-C-A 8347036-C-A ***
25161130-G-A 23014983-G-A g1 ***
22511049-C-A 20349163-C-A DYZ19 ***
22433561-C-G 20271675-C-G DYZ19 ******
22448030-T-G 20286144-T-G DYZ19 ***
22368310-C-G 20206424-C-G DYZ19 ***
22365185-C-G 20203299-C-G DYZ19 ***
22511001-T-G 20349115-T-G DYZ19 ***
22511027-C-T 20349141-C-T DYZ19 ***
19939191-G-T 17827311-G-T P5_Prx ***
25061953-A-G 22915806-A-G g1 ***
18060338-A-C 15948458-A-C ******
8568465-G-GTT 8700424-G-GTT 22×T***
58975363-G-C 56829216-G-C ***
24166442-A-G 22020295-A-G P3_b1 ***
24712242-T-C 22566095-T-C P3_b2 ***
22419995-C-A 20258109-C-A DYZ19 ***
56833017-C-A ***
13478208-C-G 11322532-C-G ***
14717647-G-T 12605715-G-T ***
15404329-GAA-G 13292449-GAA-G 13×A***
9702833-C-A 9865224-C-A IR3_Prx ***
10889308-C-CATTAGTGTTT ***
10889297-C-CCGTT ***
16929563-C-A 14817683-C-A ***
18893398-T-C 16781518-T-C ***
18893378-TTATC-T 16781498-TTATC-T ***
56832012-C-CCACTG ***
18893382-C-G 16781502-C-G ***
8760517-CTTTTTTTT-C,CTTTTTTT 8892476-CTTTTTTTT-C,CTTTTTTT 20×T***
13866204-A-T 11745498-A-T ***
13866217-A-T 11745511-A-T ***
10940380-C-A ***
16912545-C-A 14800665-C-A ***
18060349-TATATGTAC-T 15948469-TATATGTAC-T ***
22280993-T-G 20119107-T-G DYZ19 ***
13478196-G-T 11322520-G-T ***
18838590-C-A 16726710-C-A ***
17755835-C-A 15643955-C-A ***
10776008-T-A ***
10889299-A-AG ***
10773635-C-A ***
13478217-G-T 11322541-G-T ***
9931725-G-A 10094116-G-A ***
6714749-C-A 6846708-C-A ***
56826262-C-A ***
58976197-C-T 56830050-C-T ***
15279032-AGGGATTGTGAGTGGAGATGCCCCTGATCTTTGACAAATCTCCTATTGGTGCTTGGAACC-A 13167131-AGGGATTGTGAGTGGAGATGCCCCTGATCTTTGACAAATCTCCTATTGGTGCTTGGAACC-A ***
23373458-C-A 21211572-C-A ***
23475512-C-T 21313626-C-T ***
10934798-GG-G,GA ***
22283604-G-C 20121718-G-C DYZ19 ***
22450271-GT-G 20288385-GT-G DYZ19 ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

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