Tree Position

R-U106/S21 > Z2265 > Z381/S263 > Z301/S499 > L48 > Z9 > Z30/S271 > Z349 > Z2 > ~22277095-G-A > FGC19759 > FGC19766

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
N125396
FGC
NGXTX
9131518-A-G 9293909-A-G FGC9656 YP4158 Y+**
5851688-A-G 5983647-A-G FGC19757 ++
7268474-T-C 7400433-T-C FGC19758 YY++
15782380-T-C 13670500-T-C FGC19770 YY++
16852703-T-C 14740823-T-C FGC19772 YY++
17141862-C-T 15029982-C-T FGC19773 YY++
17275463-C-T 15163583-C-T A1140 PR2371 YY++
21969835-C-A 19807949-C-A FGC19778 YY++
22239358-G-T 20077472-G-T BY42596FGC19779 DYZ19 +**
28480011-G-C 26333864-G-C FGC19781 **+
5937074-A-G 6069033-A-G FGC31499 +
6028966-C-T 6160925-C-T YFS233465 FGC31502 +
6499535-C-A 6631494-C-A FGC31503 +
7016501-A-G 7148460-A-G FGC31505 Y+
16232248-T-C 14120368-T-C FGC31510 YY+
18968155-C-T 16856275-C-T FGC31511 Y+
20839015-G-T 18677129-G-T YFS233549 FGC31515 P4_Gap +
21885831-C-T 19723945-C-T FGC19777 YY+
17381651-C-T 15269771-C-T FGC31492 Y*
9736500-T-C 9898891-T-C FGC31506 YFS233488 IR3_Prx ***
3510250-A-G 3642209-A-G FGC31497 *
4777787-T-A 4909746-T-A FGC31498 *
14910979-G-T 12799046-G-T FGC31509 YY*
18990950-A-G 16879070-A-G FGC31512 YY*
9131450-G-A 9293841-G-A Z8908ZS350 **
21337651-G-A 19175765-G-A PF3560 **
9131437-T-G 9293828-T-G Z8908Z8908 Z4436 **
9131459-C-G 9293850-C-G Z8908ZS351 YP5308 **
13319855-T-C 11164179-T-C **
22236606-C-T 20074720-C-T DYZ19 **
9131474-A-C 9293865-A-C **
9131475-T-C 9293866-T-C **
14319551-ATG-A 12198845-ATG-A **
18002074-A-G 15890194-A-G FGC7494 P7_Gap **
7723814-G-A 7855773-G-A YFS233475 ****
15167971-C-A 13056057-C-A PF7500 **
13287250-G-A 11131574-G-A **
15255769-GGTGTGTGTGTGTGT-G 13143855-GGTGTGTGTGTGT-G 24×GT**
20569614-C-CAAAAA 18407728-C-CAAAAA P5_Dst 33×A**
19965303-C-CT 17853423-C-CT P5_Prx 10×T***
25524693-C-CTTTT 23378546-C-CTTTT P1_gr1 33×T***
58975202-A-T 56829055-A-T ***
22361657-C-T 20199771-C-T DYZ19 ***
9198340-C-A 9360731-C-A ***
13256791-A-C 11101115-A-C ***
13256773-T-C 11101097-T-C ***
27432937-C-A 25286790-C-A P1_g3 ***
58843537-T-G 56747334-A-C ***
58898602-T-G 56692269-A-C ***
20332111-C-CAAAAAAAAAAAAAAAAA 18170225-C-CAAAAAAAAAAAAAAAAA P5_Dst 30×A***
58987211-ATCAC-TTCAT 56841064-ATCAC-TTCAT ***
13319782-A-T 11164106-A-T ***
22257118-C-G 20095232-C-G DYZ19 ***
27151331-A-T 25005184-A-T P1_g3 ***
58893231-G-C 56697640-C-G ***
22341971-AGA-TGG 20180085-AGA-TGG DYZ19 ***
22235093-G-T 20073207-G-T DYZ19 ***
22252915-T-A 20091029-T-A DYZ19 ***
22353019-GT-TC 20191133-GT-TC DYZ19 ***
9429667-C-CAAAA 9592058-C-CAAAA 25×A***
25472022-TCTTC-T 23325875-TCTTC-T P2_r2 ***
22232040-C-A 20070154-C-A BY10784 DYZ19 ***
58909150-G-C 56681721-C-G ***
58870586-TAATTCGAGCCAC-T 56720272-GGTGGCTCGAATT-G ***
22226503-G-T 20064617-G-T DYZ19 ***
22496111-T-G 20334225-T-G DYZ19 ***
27151329-G-T 25005182-G-T P1_g3 ***
22496118-TC-GT 20334232-TC-GT DYZ19 ***
58907314-CTATTCCATT-C 56683547-GAATGGAATA-G ***
13485089-A-C 11329413-A-C ***
22292695-G-T 20130809-G-T DYZ19 ***
58829070-C-A 56761801-G-T ***
58872240-C-T 56718631-G-A ***
13482969-TA-CC 11327293-TA-CC ***
13256068-G-T 11100392-G-T ***
13460188-C-G 11304512-C-G ***
13474828-A-G 11319152-A-G ***
13716396-T-A 11560720-T-A ***
58876306-A-T 56714565-T-A ***
22263779-G-A 20101893-G-A DYZ19 ***
10090635-G-C 10253026-G-C ***
23801733-C-CAAAA 21639847-C-CAAAA 31×A***
13256715-G-A 11101039-G-A ***
58831498-GTTC-ATTT 56759370-GAAC-AAAT ***
20537954-G-C 18376068-G-C P5_Dst ***
20537986-C-A 18376100-C-A P5_Dst ***
22226524-TG-AC 20064638-TG-AC DYZ19 ***
22491021-C-G 20329135-C-G DYZ19 ***
13253705-TTCA-CTCT 11098029-TTCA-CTCT ***
19937284-G-GCCCCCC 17825404-G-GCCCCCC P5_Prx 13×C***
58823275-CCCATTCCATCTCATTCCATTCCATT-C 56767561-AATGGAATGGAATGGAATGGAATGAG-A ***
59004624-GAAAGAAAG-G,GAAAGAAAC 56858477-GAAAGAAAG-G,GAAAGAAAC ***
20127904-T-C 18016024-T-C P5_Dst ***
58840403-A-T 56750468-T-A ***
13461950-TGGT-AGGC 11306274-TGGT-AGGC ***
13483214-GATACT-AATATG 11327538-GATACT-AATATG ***
13492973-TCCTG-CCTTA 11337297-TCCTG-CCTTA ***
22366009-GTTG-TTTT 20204123-GTTG-TTTT DYZ19 ***
22495815-A-C 20333929-A-C DYZ19 ***
59030791-G-GAA 56884644-G-GAA 10×A***
59013640-TTTTTT-ATATATA 56867493-TTTTTT-ATATATA ***
58872331-A-C 56718540-T-G ***
13480008-CA-TG 11324332-CA-TG ***
58838389-A-C 56752482-T-G ***
58877129-T-C 56713742-A-G ***
22359920-C-A 20198034-C-A DYZ19 ***
13734082-T-G 11578406-T-G ***
58872258-G-T 56718613-C-A ***
58882818-A-C 56708053-T-G ***
10066965-CCAAC-TCAAT 10229356-CCAAC-TCAAT ***
58830741-ATG-TTC 56760128-CAT-GAA ***
13483807-C-T 11328131-C-T ***
10084308-TA-T 10246699-TA-T ***
28491339-A-ACACCCCCAT 26345192-A-ACACCCCCAT ***
10090758-G-T 10253149-G-T ***
22504362-G-T 20342476-G-T DYZ19 ***
13503675-ATG-TTA 11347999-ATG-TTA ***
58829066-TTCCCTTCCG-ATCCCTTCCA 56761796-CGGAAGGGAA-TGGAAGGGAT ***
20541680-T-C 18379794-T-C P5_Dst ***
13488843-TG-CC 11333167-TG-CC ***
19377435-GAAGG-AAAGA 17265555-GAAGG-AAAGA ***
13475480-C-G 11319804-C-G ***
6162272-T-G 6294231-T-G IR3_Dst ***
6162229-A-T 6294188-A-T IR3_Dst ***
58843581-A-C 56747290-T-G ***
22334409-A-C 20172523-A-C DYZ19 ***
58844865-A-C 56746006-T-G ***
13535673-A-G 11379997-A-G ***
13140070-ACTCGAGTGCGTGTGATTC-A 10629556-ACTCGAGTGCGTGTGATTC-A ***
58891342-ATAGCATTCCATTG-A 56699515-GCAATGGAATGCTA-G ***
22291970-T-G 20130084-T-G DYZ19 ***
58824858-G-T 56766013-C-A ***
58877130-G-C 56713741-C-G ***
22127975-C-CTTTTTTTT 19966089-C-CTTTTTTTT 20×T***
27432945-C-A 25286798-C-A P1_g3 ***
13294189-T-C 11138513-T-C ***
3481514-C-A 3613473-C-A 12×A***
3663397-G-A 3795356-G-A ***
6684205-C-CAAAAAA 6816164-C-CAAAAAA 31×A***
13256963-A-C 11101287-A-C ***
13351208-T-A 11195532-T-A ***
22048695-A-AAAT 19886809-A-AAAT 9×AAT***
58843242-T-G 56747629-A-C ***
4090893-A-G 4222852-A-G ***
13463860-CACGCGGGA-GACGTGGGG 11308184-CACGCGGGA-GACGTGGGG ***
22495758-C-TG 20333872-C-TG DYZ19 ***
59024004-AAAAAAAAAAAAAAAA-CAAAAAAAAAG 56877857-AAAAAAAAAAAAAAAA-CAAAAAAAAAG ***
22449750-A-C 20287864-A-C DYZ19 ***
22449757-T-G 20287871-T-G DYZ19 ***
58876391-C-A 56714480-G-T ***
58876402-A-T 56714469-T-A ***
13258855-T-C 11103179-T-C ***
22255114-G-A 20093228-G-A DYZ19 ***
24658495-C-T 22512348-C-T P3_b2 ***
10034792-T-C 10197183-T-C ***
6162207-C-G 6294166-C-G IR3_Dst ***
22456686-A-G 20294800-A-G DYZ19 ***
6162228-GA-AT 6294187-GA-AT IR3_Dst ***
10023123-G-C 10185514-G-C ***
58843642-G-T 56747229-C-A ***
58862541-C-T 56728330-G-A ***
13287270-T-A 11131594-T-A ***
58843642-GC-TT 56747228-GC-AA ***
58828933-A-C 56761938-T-G ***
58874490-T-A 56716381-A-T ***
13140079-CGTGTGATTCCATTAAATCAGA-C 10629565-CGTGTGATTCCATTAAATCAGA-C ***
58843990-CATTCCATTCGATTTAGTTCGATTCTATTCACTTCCATTTCCATTCG-C 56746825-GGAATGGAATCGAATGGAAATGGAAGTGAATAGAATCGAACTAAATC-G ***
58861617-A-G 56729254-T-C ***
22256553-G-T 20094667-G-T BY214425 DYZ19 ******
22274427-G-C 20112541-G-C DYZ19 ***
22284119-G-A 20122233-G-A DYZ19 ***
22288803-A-T 20126917-A-T DYZ19 ***
22291277-G-A 20129391-G-A DYZ19 ***
22363438-G-A 20201552-G-A DYZ19 ***
22467145-C-A 20305259-C-A BY43937 DYZ19 ******
25932916-C-T 23786769-C-T P1_Y1 ***
13481879-A-G 11326203-A-G ***
22491722-T-C 20329836-T-C DYZ19 ***
58870601-A-T 56720270-T-A ***
28206234-A-T 26060087-A-T Z21561 P1_b4 ***
58869873-T-C 56720998-A-G ***
3006930-T-C 3138889-T-C ***
3548103-T-C 3680062-T-C ***
4712646-T-A 4844605-T-A ***
6162228-G-A 6294187-G-A IR3_Dst ***
7026698-T-C 7158657-T-C ***
7120151-T-C 7252110-T-C ***
7536057-A-G 7668016-A-G ***
9562011-C-T 9724402-C-T IR3_Prx ***
9589929-C-A 9752320-C-A IR3_Prx ***
9589930-T-A 9752321-T-A IR3_Prx ***
9589935-C-T 9752326-C-T IR3_Prx 9×T***
9611329-A-T 9773720-A-T IR3_Prx ***
9986928-G-A 10149319-G-A ***
10034757-A-G 10197148-A-G ***
10034760-T-C 10197151-T-C ***
10034781-A-T 10197172-A-T ***
10034782-C-A 10197173-C-A ***
10034788-T-C 10197179-T-C ***
10090641-G-A 10253032-G-A ***
10090650-C-G 10253041-C-G ***
10090657-C-A 10253048-C-A ***
13105751-T-A 10595237-T-A ***
13245619-G-A 11089943-G-A ***
13310740-G-A 11155064-G-A ***
13319762-A-G 11164086-A-G ***
13328979-G-T 11173303-G-T ***
13373097-C-A 11217421-C-A ***
13390782-C-A 11235106-C-A ***
13390788-T-C 11235112-T-C ***
13392034-A-G 11236358-A-G ***
13481883-C-A 11326207-C-A ***
13483789-T-A 11328113-T-A ***
13535701-A-G 11380025-A-G ***
13696877-A-C 11541201-A-C ***
13708410-T-G 11552734-T-G ***
13734071-A-G 11578395-A-G ***
13735770-G-T 11580094-G-T ***
14985044-A-C 12873112-A-C ***
15294098-A-T 13182197-A-T ***
18274698-G-A 16162818-G-A P6_Prx ***
18342931-A-T 16231051-A-T P6_Prx ***
18454668-T-C 16342788-T-C P6_Dst ***
18537223-T-G 16425343-T-G P6_Dst ***
19740566-A-T 17628686-A-T P5_Prx ***
19757139-A-T 17645259-A-T P5_Prx ***
19759512-G-T 17647632-G-T P5_Prx ***
19759520-T-G 17647640-T-G P5_Prx ***
19759525-T-C 17647645-T-C P5_Prx ***
19759530-G-C 17647650-G-C P5_Prx ***
19762116-G-C 17650236-G-C P5_Prx ***
19762117-A-T 17650237-A-T P5_Prx ***
19762118-G-C 17650238-G-C P5_Prx ***
20261655-A-T 18099769-A-T P5_Dst ***
20333196-A-G 18171310-A-G P5_Dst ***
20333200-A-G 18171314-A-G P5_Dst ***
20333204-A-G 18171318-A-G P5_Dst ***
20459067-C-A 18297181-C-A P5_Dst ***
20461526-A-G 18299640-A-G P5_Dst ***
20461530-A-G 18299644-A-G P5_Dst ***
20461550-C-T 18299664-C-T P5_Dst ***
20461561-T-G 18299675-T-G P5_Dst ***
20461563-T-G 18299677-T-G P5_Dst ***
20526465-A-T 18364579-A-T P5_Dst ***
20526670-C-T 18364784-C-T P5_Dst ***
20541627-T-G 18379741-T-G P5_Dst ***
22245029-T-C 20083143-T-C DYZ19 ***
22273636-C-T 20111750-C-T DYZ19 ***
22354389-A-T 20192503-A-T DYZ19 ***
22361651-G-T 20199765-G-T DYZ19 ***
22420940-T-A 20259054-T-A DYZ19 ***
22431789-A-G 20269903-A-G DYZ19 ***
22431824-T-A 20269938-T-A DYZ19 ***
22449732-C-G 20287846-C-G DYZ19 ***
22491364-G-T 20329478-G-T DYZ19 ***
25207942-G-T 23061795-G-T P2_r1 ***
25207949-C-A 23061802-C-A P2_r1 ***
25526589-C-T 23380442-C-T P1_gr1 ***
25526592-C-T 23380445-C-T P1_gr1 ***
25536772-A-T 23390625-A-T P1_gr1 ***
25715045-G-A 23568898-G-A P1_b3 ***
25854911-A-G 23708764-A-G P1_Y1 ***
27395198-G-T 25249051-G-T P1_g3 ***
27591032-T-A 25444885-T-A P1_Y2 ***
27591040-T-G 25444893-T-G P1_Y2 ***
27591056-A-G 25444909-A-G P1_Y2 ***
27591095-T-G 25444948-T-G P1_Y2 ***
27827081-C-T 25680934-C-T P1_Y2 ***
27940342-A-G 25794195-A-G P1_Y2 ***
27940356-C-T 25794209-C-T P1_Y2 ***
28066354-G-A 25920207-G-A P1_Y2 ***
28206885-T-A 26060738-T-A P1_b4 ***
58829060-G-A 56761811-C-T ***
58832568-C-G 56758303-G-C ***
58839585-C-G 56751286-G-C ***
58843675-C-G 56747196-G-C ***
58843741-T-C 56747130-A-G ***
58848311-T-A 56742560-A-T ***
58849290-A-G 56741581-T-C ***
58850462-A-T 56740409-T-A ***
58861606-A-C 56729265-T-G ***
58862544-T-C 56728327-A-G ***
58872237-T-G 56718634-A-C ***
58872238-T-G 56718633-A-C ***
58872346-A-C 56718525-T-G ***
58874476-A-C 56716395-T-G ***
58879391-G-A 56711480-C-T ***
58882813-C-G 56708058-G-C ***
58893239-C-A 56697632-G-T ***
58895463-T-A 56695408-A-T ***
58909146-A-T 56681725-T-A ***
58911366-T-C 56679505-A-G ***
13476914-GCA-CCC 11321238-GCA-CCC ***
13256068-GTG-TTA 11100392-GTG-TTA ***
5204641-C-CAGGAAAACAA 5336600-C-CAGGAAAACAA 22×A***
7287987-GA-TG 7419946-GA-TG ***
9131474-AT-CC 9293865-AT-CC ***
9929943-CGCAGT-TGGGGG 10092334-CGCAGT-TGGGGG ***
10034800-CAT-TGG 10197191-CAT-TGG ***
13267779-C-CACT 11112103-C-CACT ***
13474805-TATTTGA-AATATGT 11319129-TATTTGA-AATATGT ***
13481856-GGTCT-AGTCA 11326180-GGTCT-AGTCA ***
13483789-TATTCCTGAC-AATCCTTGAG 11328113-TATTCCTGAC-AATCCTTGAG ***
13483824-GTGCGG-TTGTGA 11328148-GTGCGG-TTGTGA ***
14425195-C-CAAAAAAA 12304470-C-CAAAAAAA 15×A***
15179986-C-CAA 13068072-C-CAA 15×A***
15340383-C-CTTTTTTT 13228501-C-CTTTTTT 18×T***
15865549-C-CTTTTT 13753669-C-CTTTTT 22×T***
18447621-G-GTTTTTTTTTTTTT 16335741-G-GTTTTTTTTTTTTT P6_Dst 18×T***
18454674-TC-T 16342794-TC-T P6_Dst ***
18738825-ATG-GTA 16626945-ATG-GTA ***
19128805-G-GAAAAAAAA 17016925-G-GAAAAAAAA 18×A***
19759517-T-TGG 17647637-T-TGG P5_Prx ***
19762116-GAG-CTC 17650236-GAG-CTC P5_Prx ***
20461551-TCTCC-T 18299665-TCTCC-T P5_Dst ***
22360154-GGGTTTCTG-TTGTGTCT 20198268-GGGTTTCTG-TTGTGTCT DYZ19 ***
22480996-TC-GT 20319110-TC-GT DYZ19 ***
22802868-A-ATTTTTTTTTTTTTT 20640982-A-ATTTTTTTTTTTTTT 32×T***
23761608-A-AGAAG 21599722-A-AGAAG 23×AAG***
24425337-A-ATGCC 22279190-A-ATGCC ***
24472421-G-GAAAATTT 22326274-G-GAAAATTT 25×T***
25472012-TTTCC-CTTCT 23325865-TTTCC-CTTCT P2_r2 ***
25845074-GTTTTTTTTT-G 23698927-GTTTTTTTTT-G P1_b3 24×T***
26416274-C-CCCAA 24270127-C-CCCAA P1_Y1 24×A***
27398510-C-CAAAAAAAAAAA 25252363-C-CAAAAAAAAAAA P1_g3 23×A***
27432950-CAAC-AAAA 25286803-CAAC-AAAA P1_g3 ***
27591013-ACATTTCTTT-CTGTTTATTC 25444866-ACATTTCTTT-CTGTTTATTC P1_Y2 ***
27940333-T-TA 25794186-T-TA P1_Y2 ***
28206234-ACT-TAC 26060087-ACT-TAC P1_b4 ***
28491337-A-ACAAACACCCCC 26345190-A-ACAAACACCCCC ***
28491340-A-ACACCCCCATC 26345193-A-ACACCCCCATC ***
28784274-CA-TG 26638127-CA-TG ***
28798940-TAT-AAG 26652793-TAT-AAG ***
58838356-GTCT-TTCC 56752512-AGAC-GGAA ***
58870599-C-CGAT 56720271-G-GATC ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.