Tree Position

R-P312/S116 > Z40481 > ZZ11 > U152/S28 > L2/S139 > ZZ48 > FGC5301 > FGC5306

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFGC
910MK
18925314-T-G 16813434-T-G S782 Y+
6985619-G-A 7117578-G-A FGC5296 YY+
7115859-T-C 7247818-T-C FGC5299 Y+
7390278-CG-C 7522237-CG-C +
9034891-C-T 9197282-C-T FGC7986 Y*
13329890-A-G 11174214-A-G FGC5305 *
58845839-CATTCGAGTCCATTCG-C 56745015-TTCGAATGGACTCGAA-T **
58880691-C-T 56710180-G-A **
13519831-A-T 11364155-A-T **
9950862-T-G 10113253-T-G **
7008109-T-A 7140068-T-A Y21276 YFS071008 **
22695790-T-C 20533904-T-C YFS071072 **
4389597-CTTT-C 4521556-CTTT-C 15×T**
13611988-G-GTTTT 11456312-G-GTTTT 19×T**
16860780-A-AAAAAG 14748900-A-AAAAAG 9×AAAG**
26902286-C-CAAAAAAA 24756139-C-CAAAAAAA P1_r3 34×A**
22435760-A-T 20273874-A-T DYZ19 ***
14491214-T-TAAAC ***
22232065-G-A 20070179-G-A DYZ19 ***
25736792-C-A 23590645-C-A P1_b3 ***
58843537-T-G 56747334-A-C ***
58843539-T-C 56747332-A-G ***
58872971-C-T 56717900-G-A ***
58872977-A-C 56717894-T-G ***
58875234-G-T 56715637-C-A ***
13129514-TAGGTTC-ATGGTAA 10619000-TAGGTTC-ATGGTAA ***
22366638-ATCCTT-TTTCTG 20204752-ATCCTT-TTTCTG DYZ19 ***
25444404-CTATTTC-TTTTTTT 23298257-CTATTTC-TTTTTTT P2_r2 ***
58981976-TTTCCAC-T 56835829-TTTCCAC-T ***
22268348-A-G 20106462-A-G DYZ19 ***
10067037-A-G 10229428-A-G ***
22252916-G-T 20091030-G-T DYZ19 ***
22360717-C-A 20198831-C-A DYZ19 ***
22365657-A-T 20203771-A-T DYZ19 ***
22450095-C-G 20288209-C-G DYZ19 ***
27424163-C-T 25278016-C-T P1_g3 17×T***
13535700-TAC-T 11380024-TAC-T ***
13708403-AAC-GAG 11552727-AAC-GAG ***
20326007-C-CTTTTTT 18164121-C-CTTTTTT P5_Dst 29×T***
9956830-T-C 10119221-T-C ***
13465768-C-A 11310092-C-A F18170 ***
13476035-A-T 11320359-A-T ***
19656658-A-C 17544778-A-C P5_Prx ***
19656670-A-C 17544790-A-C P5_Prx ***
19656671-A-T 17544791-A-T P5_Prx ***
19656678-C-T 17544798-C-T P5_Prx ***
22268318-T-G 20106432-T-G DYZ19 ***
22268320-T-G 20106434-T-G DYZ19 ***
22297109-G-T 20135223-G-T DYZ19 ***
22297476-T-G 20135590-T-G DYZ19 ***
22341154-C-T 20179268-C-T DYZ19 ***
22421004-A-T 20259118-A-T DYZ19 ***
58846314-G-A 56744557-C-T ***
58875042-G-T 56715829-C-A ***
22353019-GT-TC 20191133-GT-TC DYZ19 ***
22341149-CTTCT-GCTCA 20179263-CTTCT-GCTCA DYZ19 ***
58910658-GCATTCCATTC-G 56680183-AAATGGAATGG-A 5×CATTC***
13411421-A-G 11255745-A-G ***
9950542-G-A 10112933-G-A ZS1361 ***
13411435-T-G 11255759-T-G ***
9940915-G-A 10103306-G-A ***
22337532-A-G 20175646-A-G DYZ19 ***
13842533-A-G 11721827-A-G ***
7395139-G-T 7527098-G-T A16889 ***
13483645-T-A 11327969-T-A ***
22481031-G-T 20319145-G-T DYZ19 ***
22488436-T-A 20326550-T-A DYZ19 ***
58838991-A-T 56751880-T-A ***
58909220-G-C 56681651-C-G ***
22229322-A-AG 20067436-A-AG DYZ19 ***
9940906-CTG-TTA 10103297-CTG-TTA ***
13129498-GTGCT-CTGCC 10618984-GTGCT-CTGCC ***
25592898-CTC-ATA 23446751-CTC-ATA P1_gr1 ***
59027562-CC-TG 56881415-CC-TG ***
20540838-G-T 18378952-G-T P5_Dst ***
22281896-TCT-GTC 20120010-TCT-GTC DYZ19 ***
5836034-TGG-T 5967993-TGG-T 12×G***
58829066-TTCCC-GTCCA 56761801-GGGAA-TGGAC ***
9962327-T-C 10124718-T-C ***
13485041-G-C 11329365-G-C ***
22232094-A-C 20070208-A-C DYZ19 ***
14696023-CAGAAAG-AAAAAAA 12584089-CAGAAAG-AAAAAAA ***
22252925-CACT-GACC 20091039-CACT-GACC DYZ19 ***
13460530-TC-CCT 11304854-TC-CCT ***
22293342-TT-GG 20131456-TT-GG DYZ19 ***
21154603-A-C 18992717-A-C ***
22341617-A-T 20179731-A-T DYZ19 ***
22352961-A-G 20191075-A-G DYZ19 ***
58872476-C-T 56718395-G-A ***
9952770-TG-CA 10115161-TG-CA ***
22353012-GG-AA 20191126-GG-AA DYZ19 ***
13253393-TCGG-CCAGTTTT 11097717-TCGG-CCAGTTTT ***
13701958-CAAAAGGAATT-GAAATATAATA 11546282-CAAAAGGAATT-GAAATATAATA ***
58844918-ATG-TTC 56745951-CAT-GAA ***
58872945-CGTTC-AGTT 56717922-GAACG-AACT ***
9939619-T-C 10102010-T-C ***
22366935-G-C 20205049-G-C DYZ19 ***
58833092-T-G 56757779-A-C ***
22263779-GGTGT-TACGG 20101893-GGTGT-TACGG DYZ19 ***
22252860-ATCC-GTCA 20090974-ATCC-GTCA DYZ19 ***
22236357-T-A 20074471-T-A DYZ19 ***
9932720-A-C 10095111-A-C ***
9932756-T-G 10095147-T-G ***
22349435-C-G 20187549-C-G FGC15913 DYZ19 ***
22282156-TCTTC-CCTTT 20120270-TCTTC-CCTTT DYZ19 ***
22341580-CATTATG-TGTTAAGT 20179694-CATTATG-TGTTAAGT DYZ19 ***
13473522-T-C 11317846-T-C ***
13476072-C-G 11320396-C-G ***
13436306-A-T 11280630-A-T ***
13476078-A-C 11320402-A-C ***
22420840-G-A 20258954-G-A DYZ19 ***
22420903-T-A 20259017-T-A DYZ19 ***
13476064-ATGT-CTGG 11320388-ATGT-CTGG ***
22420853-TAGT-GTGA 20258967-TAGT-GTGA DYZ19 ***
22420867-TGATG-AGATA 20258981-TGATG-AGATA DYZ19 ***
22420877-AAAA-GTAG 20258991-AAAA-GTAG DYZ19 ***
58909203-AG-TC 56681667-CT-GA ***
19025741-CAAG-GAAA 16913861-CAAG-GAAA ***
27617980-C-CAAAA 25471833-C-CAAAA P1_Y2 29×A***
24142558-A-AT 21996411-A-AT P3_b1 11×T***
22252925-C-G 20091039-C-G DYZ19 ***
22252928-T-C 20091042-T-C DYZ19 ***
22421053-A-G 20259167-A-G DYZ19 ***
9930025-AC-GG 10092416-AC-GG ***
22236345-AAGT-GATG 20074459-AAGT-GATG DYZ19 ***
10015017-A-G 10177408-A-G ***
58823275-CCCATTCCATCTCATTCCATTCCATT-C 56767561-AATGGAATGGAATGGAATGGAATGAG-A ***
58909164-AG-A 56681705-GC-G ***
58909170-C-TG 56681701-G-CA ***
22343835-C-G 20181949-C-G DYZ19 ***
58837572-C-A 56753299-G-T ***
13292702-C-T 11137026-C-T ***
58872394-A-T 56718477-T-A ***
58873002-C-T 56717869-G-A ***
13461950-TGGT-AGGC 11306274-TGGT-AGGC ***
28253491-C-CAAAAAAA 26107344-C-CAAAAAAA P1_b4 32×A***
22349422-C-A 20187536-C-A DYZ19 ***
22435997-A-T 20274111-A-T DYZ19 ***
13262767-CCT-GCC 11107091-CCT-GCC ***
22366823-AG-GC 20204937-AG-GC DYZ19 ***
22252892-G-T 20091006-G-T DYZ19 ***
22252894-T-G 20091008-T-G DYZ19 ***
22420643-G-T 20258757-G-T DYZ19 ***
22420672-G-C 20258786-G-C DYZ19 ***
22420691-G-C 20258805-G-C DYZ19 ***
22420710-G-C 20258824-G-C DYZ19 ***
22420627-CAGA-TAGG 20258741-CAGA-TAGG DYZ19 ***
8660574-G-A 8792533-G-A ***
13486287-A-G 11330611-A-G ***
13488372-C-A 11332696-C-A ***
58868742-C-G 56722129-G-C ***
20540857-GGGTC-AGGTG 18378971-GGGTC-AGGTG P5_Dst ***
13444645-C-T 11288969-C-T ***
22366505-ACAA-GGAG 20204619-ACAA-GGAG DYZ19 ***
13483807-C-T 11328131-C-T ***
13483814-T-A 11328138-T-A ***
22361553-A-T 20199667-A-T DYZ19 ***
13503524-TATAT-C 11347848-TATAT-C ***
58877133-GT-TC 56713737-AC-GA ***
13476089-A-T 11320413-A-T ***
58872996-C-A 56717875-G-T ***
58873001-T-C 56717870-A-G ***
58895414-T-C 56695457-A-G ***
19377435-GAAGG-AAAGA 17265555-GAAGG-AAAGA ***
58843694-GCATTCC-CCATACG 56747171-GGAATGC-CGTATGG ***
22420922-A-G 20259036-A-G DYZ19 ***
13605055-C-T 11449379-C-T ***
10006373-A-G 10168764-A-G ***
10006376-C-T 10168767-C-T BY82731 ***
13438765-G-T 11283089-G-T ***
10006373-ACCC-GCCT 10168764-ACCC-GCCT ***
13441082-G-T 11285406-G-T ***
13486249-A-C 11330573-A-C BY86168 ***
22488400-C-T 20326514-C-T DYZ19 ***
58877025-T-C 56713846-A-G ***
13142443-GCCAGTC-TG 10631929-GCCAGTC-TG ***
58869893-T-A 56720978-A-T ***
7395162-C-A 7527121-C-A A16890 ***
9945513-A-ATAAATAATAT 10107904-A-ATAAATAATAT ***
13277992-G-A 11122316-G-A ***
13423850-C-T 11268174-C-T ***
16321779-C-CAA 14209899-C-CAA 38×A***
17284532-C-T 15172652-C-T M9208 21×T***
17998689-C-T 15886809-C-T P7_Gap ***
58877145-G-C 56713726-C-G ***
10031930-CGGCA-GGGCG 10194321-CGGCA-GGGCG ***
13441449-A-G 11285773-A-G ***
15638198-G-A 13526318-G-A ***
58877047-A-G 56713824-T-C ***
58877050-C-G 56713821-G-C ***
58840601-G-C 56750270-C-G ***
13542828-G-C 11387152-G-C ***
58857104-C-T 56733767-G-A 4×TCCAT***
13465807-T-C 11310131-T-C ***
13529792-AAAAAAA-T 11374116-AAAAAAA-T ***
22292095-G-T 20130209-G-T BY192398 DYZ19 ***
22344153-G-T 20182267-G-T DYZ19 ***
17998681-GAC-CAA 15886801-GAC-CAA P7_Gap ***
58909235-GATGT-CATTC 56681632-ACATC-GAATG ***
16768619-G-T 14656739-G-T A16892 ***
9962310-A-G 10124701-A-G ***
13476067-T-G 11320391-T-G ***
13476064-A-C 11320388-A-C ***
19487511-T-C 17375631-T-C FTB18002 ***
2803716-G-A 2935675-G-A A16888 ***
3313465-G-A 3445424-G-A ***
6365667-C-A 6497626-C-A ***
6591213-T-C 6723172-T-C ***
7443461-C-G 7575420-C-G ***
9033865-T-C 9196256-T-C ***
9204041-C-T 9366432-C-T ***
9413421-C-A 9575812-C-A ***
9962320-T-C 10124711-T-C ***
10006346-A-C 10168737-A-C ***
13329894-A-G 11174218-A-G A8254 ***
13353860-G-C 11198184-G-C FGC49070 ***
13411399-C-T 11255723-C-T ***
13464367-A-G 11308691-A-G ***
13485841-G-A 11330165-G-A ***
13486294-G-C 11330618-G-C ***
13486323-G-C 11330647-G-C ***
13486327-A-T 11330651-A-T ***
13531556-G-A 11375880-G-A ***
14051589-G-T 11930883-G-T A16891 ***
14610554-T-C 12498756-T-C A17989 ***
18544676-T-C 16432796-T-C ***
19487558-C-G 17375678-C-G ***
19561815-G-A 17449935-G-A ***
21535982-T-C 19374096-T-C ***
22236506-A-G 20074620-A-G DYZ19 ***
22252848-T-A 20090962-T-A DYZ19 ***
22282118-T-G 20120232-T-G DYZ19 ***
22292065-G-T 20130179-G-T DYZ19 ***
22292076-A-T 20130190-A-T DYZ19 ***
22335509-C-A 20173623-C-A DYZ19 ***
22341180-G-C 20179294-G-C DYZ19 ***
22349447-G-A 20187561-G-A DYZ19 ***
22420700-T-G 20258814-T-G DYZ19 ***
22421047-A-G 20259161-A-G DYZ19 ***
22488383-T-G 20326497-T-G DYZ19 ***
24487702-T-C 22341555-T-C ***
24602334-G-A 22456187-G-A P3_t2 ***
25964715-G-T 23818568-G-T P1_Y1 ***
27525532-G-A 25379385-G-A P1_Y2 ***
58823348-A-C 56767523-T-G ***
58838945-C-T 56751926-G-A ***
58839952-A-T 56750919-T-A ***
58839967-A-T 56750904-T-A ***
58844863-T-G 56746008-A-C ***
58876840-T-C 56714031-A-G ***
58909235-G-C 56681636-C-G ***
58909569-G-C 56681302-C-G ***
58909610-T-A 56681261-A-T ***
58909631-G-C 56681240-C-G ***
58910924-C-A 56679947-G-T ***
58913139-G-C 56677732-C-G ***
5308778-C-CTATA 5440737-C-CTATA 11×TA***
17562008-G-TT 15450128-G-TT ***
13514189-ATG-GTT 11358513-ATG-GTT ***
28571566-AT-A 26425419-AT-A 14×T***
2840099-CAAAAAAAAA-C 2972058-CAAAAAAAAA-C 20×A***
2888870-C-CAAA 3020829-C-CAAA 32×A***
4289901-TAGAC-AAGAG 4421860-TAGAC-AAGAG ***
5062473-C-CAAAAAA 5194432-C-CAAAAAA 21×A***
6226042-ATC-TCT 6358001-ATC-TCT IR3_Dst ***
9991636-CC-TCA 10154027-CC-TCA ***
13329890-ATATA-GTATG 11174214-ATATA-GTATG ***
13441437-G-GT 11285761-G-GT ***
13465301-CAAAACCCC-GAATTCCCG 11309625-CAAAACCCC-GAATTCCCG ***
13470151-CTCCCAGAGG-GTCCCAGGTC 11314475-CTCCCAGAGG-GTCCCAGGTC ***
13476003-TAGTTG-GACTTT 11320327-TAGTTG-GACTTT ***
13476046-GC-TT 11320370-GC-TT ***
13476662-AAACC-GAATG 11320986-AAACC-GAATG ***
13478133-ATC-A 11322457-ATC-A ***
13479698-AAAGAGTTCCCTCCCCA-CAAGGGTTACATCACCT 11324022-AAAGAGTTCCCTCCCCA-CAAGGGTTACATCACCT ***
13481425-GGTGATC-CGAGATA 11325749-GGTGATC-CGAGATA ***
13483827-CGGAGAT-TGAAGAA 11328151-CGGAGAT-TGAAGAA ***
13485060-TTTATA-AATATG 11329384-TTTATA-AATATG ***
13485803-GCGGAGAA-AAATAGAT 11330127-GCGGAGAA-AAATAGAT ***
13485843-TC-CA 11330167-TC-CA ***
13531506-AA-G 11375830-AA-G ***
13531536-GTG-ATT 11375860-GTG-ATT ***
13542837-CGAG-GGAA 11387161-CGAG-GGAA ***
13659351-TGAAT-GGAAA 11503675-TGAAT-GGAAA ***
13726449-TGAAT-CGAAC 11570773-TGAAT-CGAAC ***
17385419-TAC-AAA 15273539-TAC-AAA ***
19656650-CTT-TTC 17544770-CTT-TTC P5_Prx ***
19948125-TCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC-T 17836245-TCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC-T P5_Prx 14×CCTC***
20425803-CAA-C 18263917-CAA-C P5_Dst 15×A***
21639038-T-TAA 19477152-T-TAA 25×A***
22236717-ACT-A 20074831-ACT-A DYZ19 ***
22236749-CAAG-TAAC 20074863-CAAG-TAAC DYZ19 ***
22435835-GGTTA-TGTTC 20273949-GGTTA-TGTTC DYZ19 ***
27232193-TC-CTT 25086046-TC-CTT P1_g3 ***
58822961-CC-GA 56767909-GG-TC ***
58840808-TTCGATTCCATTTCTTTATATTCCATG-GTCGATTCCATTTCTTTATATTCCATT 56750037-CATGGAATATAAAGAAATGGAATCGAA-AATGGAATATAAAGAAATGGAATCGAC ***
58844870-CAAT-ACTA 56745998-ATTG-TAGT ***
58874594-AAT-CAG 56716275-ATT-CTG ***
58874636-TTT-GTC 56716233-AAA-GAC ***
58909637-TT-CC 56681233-AA-GG ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.