Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > ZZ10 > CTS3386 > S19268

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
227117
BigY2
227117
22231549-G-C 20069663-G-C DYZ19 ***A*
19792957-C-G 17681077-C-G P5_Prx ***A*
26142862-G-A 23996715-G-A P1_Y1 A*
19712624-G-A 17600744-G-A P5_Prx ***A*
6392390-C-A 6524349-C-A ***A*
24282790-C-T 22136643-C-T P3_t1 A*
19875340-G-A 17763460-G-A P5_Prx ***A*
19442873-G-C 17330993-G-C FGC40148 YY++
19483753-C-CCA 17371873-C-CCA +*
19468963-G-T 17357083-G-T YY++
14720-G-T +
18163911-C-A 16052031-C-A FGC40146 YY++
17816060-ATT-A 15704180-ATT-A +
28804166-G-A 26658019-G-A +
17571047-G-T 15459167-G-T FGC40144 YY++
18712715-C-T 16600835-C-T FGC40147 YY+
17120053-T-C 15008173-T-C FGC40143 YY++
15713502-G-A 13601622-G-A Y18848 FGC40131 YY++
17971607-C-T 15859727-C-T FGC40145 YY++
10059834-G-C 10222225-G-C +
15336776-C-A 13224894-C-A FGC40141 YY++
22271294-G-T 20109408-G-T FGC40149 DYZ19 ++
28461208-G-C 26315061-G-C FGC40156 ++
22459564-G-T 20297678-G-T DYZ19 ***+
22469616-G-T 20307730-G-T DYZ19 ++
22476962-T-A 20315076-T-A FGC40150 DYZ19 ++
22525479-T-C 20363593-T-C FGC40151 Y++
22751613-T-G 20589727-T-G FGC40152 YY++
22815603-G-C 20653717-G-C FGC40153 YY++
23040818-A-AT 20878932-A-AT ++
23992544-G-A 21846397-G-A FGC40154 ++
24449571-A-T 22303424-A-T Y++
24521589-G-A 22375442-G-A FGC40155 ++
15373188-T-A 13261308-T-A FGC40142 YY++
17424804-C-T 15312924-C-T Z13760 YY++
14836635-G-A 12724702-G-A YY++
14217553-G-T 12096847-G-T FGC40140 YY++
16641821-GTA-G 14529941-GTA-G +
2807024-TTATATATATATATATATATATATATA-T 2938983-TTATATATATATATATATATATATATA-T 20×TA++
2877789-G-A 3009748-G-A FGC40132 YY++
4925615-T-C 5057574-T-C ++
6593928-G-C 6725887-G-C FGC40134 ++
6931120-G-C 7063079-G-C YY++
7216931-T-G 7348890-T-G FGC40135 YY++
7222426-T-C 7354385-T-C Y**+
7583951-T-C 7715910-T-C FGC40136 YY++
8381040-T-A 8512999-T-A FGC40137 YY++
9056177-G-C 9218568-G-C FGC40138 Y++
9880983-T-A 10043374-T-A FGC40139 YY++
6967864-CT-C 7099823-CT-C +
13888070-C-A 11767364-C-A YY++
13689935-G-A 11534259-G-A +
7172070-C-T 7304029-C-T YY+
22480375-C-A 20318489-C-A DYZ19 +
22320064-T-A 20158178-T-A DYZ19 ****
6867824-C-CCCCCT 6999783-C-CCCCCT *
22302835-A-T 20140949-A-T DYZ19 ****
14598630-A-T 12486830-A-T **
15060585-C-T 12948677-C-T **
15050039-A-G 12938130-A-G **
14803016-A-C 12691087-A-C **
14681332-G-T 12569398-G-T **
14671151-C-A 12559217-C-A **
14667865-C-A 12555931-C-A **
14361924-C-A 12241219-C-A **
14490779-C-A 12370048-C-A **
15050023-T-C 12938114-T-C **
14471794-C-A 12351063-C-A **
14909481-C-A 12797548-C-A **
15034933-G-T 12923021-G-T **
14584696-C-T 12472896-C-T **
14539394-A-T 12427595-A-T **
15011770-G-A 12899858-G-A **
14539182-C-A 12427383-C-A **
14385219-A-G 12264515-A-G **
14911934-C-A 12800001-C-A **
14911795-G-A 12799862-G-A **
14404865-G-C 12284162-G-C **
14427373-C-A 12306648-C-A **
14432156-TA-T 12311429-TA-T **
14926461-TCAAAAA-T 12814526-TCAAAAA-T **
15732864-T-C 13620984-T-C **
15171384-C-A 13059470-C-A **
15842773-G-T 13730893-G-T **
16147890-A-AG 14036010-A-AG P8_Dst **
16147495-AG-A 14035615-AG-A P8_Dst **
16075881-C-A 13964001-C-A **
16059018-A-T 13947138-A-T **
16059014-G-T 13947134-G-T **
16059011-A-C 13947131-A-C **
16046833-C-A 13934953-C-A **
16039115-C-A 13927235-C-A **
16007992-A-C 13896112-A-C **
16002277-G-A 13890397-G-A **
15909380-C-A 13797500-C-A **
15842794-C-G 13730914-C-G **
15842774-A-G 13730894-A-G **
15842644-C-T 13730764-C-T **
15286025-C-A 13174124-C-A **
15841879-C-A 13729999-C-A **
15834971-G-T 13723091-G-T **
15821453-G-A 13709573-G-A **
15821452-T-C 13709572-T-C **
15788161-T-A 13676281-T-A **
15785914-C-T 13674034-C-T **
15743136-A-G 13631256-A-G **
14193048-T-A 12072342-T-A **
15677224-T-C 13565344-T-C **
15653635-T-A 13541755-T-A **
15495390-C-A 13383510-C-A **
15386392-C-A 13274512-C-A **
15321368-C-T 13209486-C-T **
14284818-A-G 12164112-A-G **
13598479-C-A 11442803-C-A **
14184411-G-A 12063705-G-A **
10969743-C-T **
13295298-C-A 11139622-C-A **
13257406-G-T 11101730-G-T **
13254571-T-C 11098895-T-C **
13218677-A-G 11063001-A-G **
13202731-C-A 11047055-C-A **
11025820-C-A **
10988682-T-C **
10984121-C-A **
10983947-CTCCATTCCATTCCAT-C **
10971002-A-C **
10969961-T-C **
10969951-T-C **
10948671-C-A **
13311756-C-A 11156080-C-A **
10948327-A-G **
10943031-G-A **
10938654-C-A **
10934093-C-A **
10932925-C-A **
10932511-A-T **
10932459-T-A **
10932458-C-T **
10932456-G-T **
10932437-G-C **
10925346-C-A **
10918303-A-T **
10914704-G-T **
13295305-G-A 11139629-G-A 11×A**
13394839-C-T 11239163-C-T 13×G**
14147046-A-G 12026340-A-G **
11670172-GA-G **
14077091-C-A 11956385-C-A **
14077085-C-G 11956379-C-G **
14054054-C-A 11933348-C-A **
14051738-G-T 11931032-G-T **
14021222-C-A 11900516-C-A **
13940321-C-A 11819615-C-A **
13901940-C-G 11781234-C-G **
13899078-G-T 11778372-G-T **
13898787-G-T 11778081-G-T **
13893389-A-G 11772683-A-G **
13880116-C-A 11759410-C-A **
13861036-A-G 11740330-A-G **
13858346-A-G 11737640-A-G **
11657468-G-T **
13446153-C-A 11290477-C-A **
11648452-A-G **
13630872-C-A 11475196-C-A **
13606636-T-C 11450960-T-C **
13601149-C-A 11445473-C-A **
16465889-C-T 14354009-C-T **
13596458-C-A 11440782-C-A **
13574202-G-T 11418526-G-T **
13544862-T-A 11389186-T-A **
13521171-C-A 11365495-C-A **
13512399-T-C 11356723-T-C **
13494099-C-A 11338423-C-A **
13460474-T-C 11304798-T-C **
13457716-GATTCCATTCCATTCCATTCCATTCCATTCCATTCC-G 11302040-GATTCCATTCCATTCCATTCCATTCCATTCCATTCC-G 12×ATTCC**
16336935-C-A 14225055-C-A **
17995024-G-A 15883144-G-A P7_Prx **
16492474-C-A 14380594-C-A **
22851672-C-A 20689786-C-A **
23875213-A-G 21713327-A-G **
23808796-C-A 21646910-C-A **
23801658-A-G 21639772-A-G **
23602163-C-T 21440277-C-T **
23522584-C-A 21360698-C-A **
23512380-A-C 21350494-A-C **
23434444-C-A 21272558-C-A **
23411310-C-A 21249424-C-A **
23293619-T-G 21131733-T-G **
23293596-GTGTATATATATA-G 21131710-GTGTATATATATA-G **
23261276-T-G 21099390-T-G **
22997463-C-T 20835577-C-T **
22602304-C-A 20440418-C-A **
23981912-C-A 21835765-C-A **
22215008-T-A 20053122-T-A **
22170294-A-T 20008408-A-T **
22134025-C-A 19972139-C-A **
22132410-C-A 19970524-C-A **
22055238-T-C 19893352-T-C **
21996235-G-T 19834349-G-T **
21983997-C-A 19822111-C-A **
21949120-C-T 19787234-C-T **
21850254-G-T 19688368-G-T **
21807042-T-A 19645156-T-A **
21738744-T-C 19576858-T-C **
21603933-C-A 19442047-C-A **
21554334-G-A 19392448-G-A **
23875282-G-C 21713396-G-C **
23997265-C-A 21851118-C-A FGC44757 **
21462609-C-G 19300723-C-G **
28147159-CA-C 26001012-CA-C P1_b4 **
56863043-T-A **
56823337-C-A **
56823322-A-G **
28745111-C-A 26598964-C-A **
28725983-C-A 26579836-C-A **
28724194-TG-T 26578047-TG-T **
28716402-C-A 26570255-C-A **
28640447-C-A 26494300-C-A **
28609589-C-T 26463442-C-T **
28609587-G-T 26463440-G-T **
28609570-GA-G 26463423-GA-G **
28605954-C-A 26459807-C-A **
28369966-T-C 26223819-T-C P1_gr2 **
27971701-C-A 25825554-C-A P1_Y2 **
24127453-A-C 21981306-A-C P3_b1 **
27952138-CAT-C 25805991-CAT-C P1_Y2 **
27636256-G-T 25490109-G-T P1_Y2 **
27595818-C-T 25449671-C-T P1_Y2 **
27576128-T-C 25429981-T-C P1_Y2 **
27521992-G-T 25375845-G-T P1_Y2 **
26415676-CAAAAA-C 24269529-CAAAAA-C P1_Y1 20×A**
26415627-A-G 24269480-A-G P1_Y1 **
26391572-T-C 24245425-T-C P1_Y1 **
26355498-C-A 24209351-C-A P1_Y1 **
26060204-A-G 23914057-A-G P1_Y1 **
24910931-T-A 22764784-T-A g1 **
24475088-C-A 22328941-C-A **
24298896-C-CAA 22152749-C-CAA P3_t1 **
21476473-C-A 19314587-C-A **
21459604-C-A 19297718-C-A **
16539739-C-A 14427859-C-A **
17177126-C-A 15065246-C-A **
18483398-AAAAT-C 16371518-AAAAT-C P6_Dst **
18071643-T-A 15959763-T-A **
18059776-T-C 15947896-T-C **
18007174-C-A 15895294-C-A P7_Gap **
10914652-T-C **
17903458-C-A 15791578-C-A **
17753817-T-C 15641937-T-C **
17702284-A-T 15590404-A-T **
17702273-C-T 15590393-C-T **
17492035-C-T 15380155-C-T **
17470842-T-C 15358962-T-C **
17375707-G-T 15263827-G-T **
17369368-T-C 15257488-T-C **
17164229-T-A 15052349-T-A **
18630815-C-T 16518935-C-T **
17158989-TTTTTTG-T 15047109-TTTTTTG-T **
17042817-C-A 14930937-C-A **
16997562-A-T 14885682-A-T **
16993369-A-G 14881489-A-G **
16987198-T-A 14875318-T-A **
16987172-G-A 14875292-G-A **
16938219-T-C 14826339-T-C **
16938210-T-C 14826330-T-C **
16738638-T-A 14626758-T-A **
16704406-C-A 14592526-C-A **
16688357-G-T 14576477-G-T **
16648155-C-A 14536275-C-A **
16551074-T-C 14439194-T-C **
18611783-C-A 16499903-C-A **
18630825-T-C 16518945-T-C **
21427201-C-A 19265315-C-A **
19299432-C-A 17187552-C-A **
21352928-C-A 19191042-C-A **
21253889-C-A 19092003-C-A **
21238268-C-T 19076382-C-T **
21138629-C-G 18976743-C-G **
21014998-T-C 18853112-T-C P4_Dst **
20640930-G-GAA 18479044-G-GAA P4_Prx 14×A**
20569381-C-A 18407495-C-A P5_Dst **
20376806-CT-C 18214920-CT-C P5_Dst **
20376731-C-A 18214845-C-A P5_Dst **
19963832-A-ATATT 17851952-A-ATATT P5_Prx **
19799989-C-A 17688109-C-A P5_Prx **
19449301-C-A 17337421-C-A **
19304673-C-A 17192793-C-A **
19155981-C-A 17044101-C-A **
18630829-T-C 16518949-T-C **
19125689-CGT-C 17013809-CGT-C **
19078935-C-A 16967055-C-A **
19053232-C-T 16941352-C-T **
19052403-A-C 16940523-A-C **
18976520-C-A 16864640-C-A **
18955852-C-A 16843972-C-A **
18955801-G-A 16843921-G-A **
18838826-G-A 16726946-G-A **
18796627-A-C 16684747-A-C **
18780465-C-A 16668585-C-A **
18768432-T-A 16656552-T-A **
18737634-C-A 16625754-C-A **
18630831-A-G 16518951-A-G **
10914697-T-A **
10844598-C-T **
10914648-C-T **
4215534-G-T 4347493-G-T **
4918305-T-C 5050264-T-C **
4888464-A-G 5020423-A-G **
4873823-G-A 5005782-G-A **
4872599-G-T 5004558-G-T **
4788904-G-T 4920863-G-T **
4672253-A-T 4804212-A-T **
4351429-C-A 4483388-C-A **
4316766-C-A 4448725-C-A **
4262392-C-A 4394351-C-A **
4032206-C-A 4164165-C-A **
4996135-T-G 5128094-T-G **
4022071-C-T 4154030-C-T **
3889711-C-A 4021670-C-A **
3862212-C-A 3994171-C-A **
3850201-C-T 3982160-C-T **
3835101-G-T 3967060-G-T **
3833474-T-C 3965433-T-C **
3833473-C-T 3965432-C-T **
3695987-T-C 3827946-T-C **
3681363-T-A 3813322-T-A **
3591554-A-G 3723513-A-G **
4970087-C-A 5102046-C-A **
5059550-C-A 5191509-C-A **
3559556-C-A 3691515-C-A **
5587070-T-A 5719029-T-A **
5980376-T-C 6112335-T-C **
5937242-C-CTATATA 6069201-C-CTATATA 18×TA**
5814592-C-A 5946551-C-A **
5778187-A-C 5910146-A-C **
5772971-G-T 5904930-G-T **
5727957-C-A 5859916-C-A **
5690188-C-A 5822147-C-A **
5687572-C-A 5819531-C-A **
5674649-G-A 5806608-G-A **
5609332-A-G 5741291-A-G **
5542103-G-T 5674062-G-T **
10914642-A-G **
5503280-G-T 5635239-G-T **
5495270-A-T 5627229-A-T **
5445561-T-A 5577520-T-A **
5445447-G-T 5577406-G-T **
5393566-C-A 5525525-C-A **
5369609-T-C 5501568-T-C **
5221065-C-A 5353024-C-A **
5215800-C-A 5347759-C-A **
5125400-T-C 5257359-T-C **
5081078-T-A 5213037-T-A **
3559604-C-A 3691563-C-A **
3545910-G-T 3677869-G-T **
6100464-C-A 6232423-C-A **
28635218-C-A 26489071-C-A **
9926741-C-A 10089132-C-A **
9125516-G-T **
25592761-C-A 23446614-C-A P1_gr1 **
17369376-C-A 15257496-C-A **
4540739-C-A 4672698-C-A **
10764574-C-CCCCT **
7650583-C-A 7782542-C-A **
21299189-C-A 19137303-C-A **
16968149-T-C 14856269-T-C **
10686671-C-T **
2909260-G-T 3041219-G-T **
10824051-C-A **
28369970-A-T 26223823-A-T P1_gr2 **
10020171-C-A 10182562-C-A **
3345585-C-A 3477544-C-A **
7110518-ATT-A 7242477-ATT-A 12×T**
15146742-C-A 13034829-C-A **
25207997-G-A 23061850-G-A P2_r1 **
15050043-T-C 12938134-T-C **
15050033-C-G 12938124-C-G **
7038432-C-A 7170391-C-A **
25207822-C-CAAA 23061675-C-CAAA P2_r1 51×A**
14267111-CA-C 12146405-CA-C **
11018762-C-A **
3399735-G-T 3531694-G-T **
2773869-A-G 2905828-A-G **
3279498-C-A 3411457-C-A **
3272763-G-A 3404722-G-A **
3170504-G-T 3302463-G-T **
3131714-G-T 3263673-G-T **
3103109-T-G 3235068-T-G **
3103028-C-A 3234987-C-A **
3073177-A-T 3205136-A-T **
3032588-T-A 3164547-T-A **
2926679-C-A 3058638-C-A **
2914987-G-T 3046946-G-T FGC40133 **
2770780-T-A 2902739-T-A **
17310907-C-T 15199027-C-T **
2770714-G-A 2902673-G-A **
2770699-T-G 2902658-T-G **
2759731-C-A 2891690-C-A **
2730069-T-A 2862028-T-A **
2729948-C-G 2861907-C-G **
2718924-G-C 2850883-G-C **
2685567-C-T 2817526-C-T **
15770634-C-A 13658754-C-A **
7270305-A-C 7402264-A-C **
5358621-C-A 5490580-C-A **
6028229-A-G 6160188-A-G **
5691323-G-T 5823282-G-T **
6149664-G-T 6281623-G-T IR3_Dst **
10671619-C-A **
10802183-C-T **
10802156-C-G **
10786538-C-G **
10781237-C-A **
10773267-C-A **
10762890-C-A **
10748411-C-A **
10748384-G-T **
10686662-T-C **
10659174-C-A **
10826721-C-A **
10617629-C-A **
10031183-CCCTAAAATTTAAA-C 10193574-CCCTAAAATTTAAA-C **
6404815-G-T 6536774-G-T **
9700691-C-A 9863082-C-A IR3_Prx **
9482389-G-A 9644780-G-A **
9437287-T-A 9599678-T-A **
9416743-T-G 9579134-T-G **
9385072-C-A 9547463-C-A **
9117027-TA-T 9279418-TA-T **
10810918-A-T **
10828828-C-T **
9040257-G-A 9202648-G-A **
10890381-C-A **
10914620-A-T **
10914619-C-G **
10904615-A-G **
10904614-A-G **
10904596-G-C **
10904592-A-C **
10904585-A-C **
10898899-G-T **
10894701-C-A **
10890320-C-A **
10828838-C-A **
10873462-C-A **
10867841-A-T **
10865863-C-A **
10857665-C-T **
7443490-A-G 7575449-A-G **
10842539-C-A **
10837865-C-G **
10836666-T-C **
10831811-C-A **
10831803-C-A **
9077274-G-T 9239665-G-T **
9700803-ATG-A 9863194-ATG-A IR3_Prx **
9034668-G-A 9197059-G-A **
7063802-C-A 7195761-C-A **
7256128-C-T 7388087-C-T **
7248570-C-A 7380529-C-A **
7201542-T-G 7333501-T-G **
7188264-C-A 7320223-C-A **
7180136-A-G 7312095-A-G **
7166237-G-T 7298196-G-T **
7165450-G-T 7297409-G-T **
7140638-C-G 7272597-C-G **
7110503-T-C 7242462-T-C **
7063392-C-A 7195351-C-A **
7319806-C-A 7451765-C-A **
7039292-G-A 7171251-G-A **
6978243-C-A 7110202-C-A **
6828600-T-C 6960559-T-C **
6827782-C-A 6959741-C-A **
6769937-C-A 6901896-C-A **
6682281-T-C 6814240-T-C **
6582304-T-A 6714263-T-A **
6523917-C-T 6655876-C-T **
6491404-C-A 6623363-C-A **
7270309-A-C 7402268-A-C **
7152793-C-A 7284752-C-A **
7363915-A-T 7495874-A-T **
9025440-A-C 9187831-A-C **
8854374-C-A 8986333-C-A **
8698679-T-C 8830638-T-C **
7489129-C-G 7621088-C-G IR1_L **
8698037-A-T 8829996-A-T **
8697722-C-A 8829681-C-A **
8296798-C-A 8428757-C-A **
8293792-C-A 8425751-C-A **
8002071-G-A 8134030-G-A **
8856755-T-A 8988714-T-A **
8002017-T-C 8133976-T-C **
13819953-AGGAATTGAAT-A 11699247-AGGAATTGAAT-A **
7861480-A-C 7993439-A-C **
7829185-C-A 7961144-C-A **
7996864-C-A 8128823-C-A **
7774147-C-A 7906106-C-A **
13830229-G-T 11709523-G-T ***
24100709-T-C 21954562-T-C P3_b1 ***
24095697-T-A 21949550-T-A P3_b1 ***
13830225-GA-G 11709519-GA-G ***
13860122-A-T 11739416-A-T ***
22451768-C-T 20289882-C-T DYZ19 ***
22244796-T-A 20082910-T-A DYZ19 ***
13714341-A-G 11558665-A-G ***
22244809-A-T 20082923-A-T BY38900 DYZ19 ***
22313402-C-G 20151516-C-G DYZ19 ***
22244822-T-C 20082936-T-C DYZ19 ***
22244790-T-G 20082904-T-G FGC71298 DYZ19 ***
22244863-T-A 20082977-T-A DYZ19 ***
22284220-C-G 20122334-C-G DYZ19 ***
22296760-G-A 20134874-G-A DYZ19 ***
22244859-G-C 20082973-G-C DYZ19 ***
56832841-TGCCAG-T,TGCCAC ***
18982584-AAAG-A,AAAA 16870704-AAAG-A,AAAA ***
13860121-A-G 11739415-A-G ***
13459103-T-TTCCCC 11303427-T-TTCCCC ***
13860129-G-A 11739423-G-A ***
13450176-CCATTG-C,CCATTC 11294500-CCATTG-C,CCATTC ***
17802196-AG-A 15690316-AG-A ***
13860119-T-C 11739413-T-C ***
13737177-TCGAAC-T 11581501-TCGAAC-T ***
13447090-ACCATTCTATTACTTT-A 11291414-ACCATTCTATTACTTT-A ***
13714333-ATTGAT-A 11558657-ATTGAT-A ***
10025922-G-A 10188313-G-A ***
10025908-A-G 10188299-A-G ***
13845541-A-AAATGGAATGG,G 11724835-A-AAATGGAATGG,G 8×AATGG***
56828189-C-T ***
13700464-T-G 11544788-T-G ***
24138899-A-G 21992752-A-G P3_b1 ***
27791947-T-G 25645800-T-G P1_Y2 ***
21754394-G-T ***
16702028-T-C 14590148-T-C ***
24834707-T-C 22688560-T-C P3_b2 ***
10791092-G-T ***
5864663-C-A 5996622-C-A ***
7704481-C-A 7836440-C-A ***
14324921-GA-G 12204215-GA-G ***
9014283-C-A 9176674-C-A ***
9385062-C-A 9547453-C-A ***
11672626-G-A ***
13435136-C-A 11279460-C-A ***
5644733-T-C 5776692-T-C ***
10838980-C-A ***
10841009-CTCCATTCCAT-C ***
10842499-C-A ***
25472735-C-A 23326588-C-A P2_r2 23×A***
10949492-C-A ***
10940601-A-T ***
10892631-T-C ***
5864496-C-A 5996455-C-A ***
5449442-G-T 5581401-G-T ***
23838957-G-A 21677071-G-A ***
13455784-AAGTCCATTCT-A,C 11300108-AAGTCCATTCT-A,C ***
24914282-A-G 22768135-A-G g1 ***
24953782-T-A 22807635-T-A g1 ***
23759112-CT-A 21597226-CT-A ***
23625448-A-G 21463562-A-G ***
25250508-T-C 23104361-T-C P2_r1 ***
26991333-T-TAAAA 24845186-T-TAAAA P1_r4 33×A***
58973226-G-T 56827079-G-T ***
13856276-A-AGGAAT 11735570-A-AGGAAT ***
17885853-G-T 15773973-G-T ***
13455624-CACTCGGGTTG-C 11299948-CACTCGGGTTG-C ***
13457973-CTCCGT-C 11302297-CTCCGT-C 7×TCCGT***
13864550-T-A,G 11743844-T-A,G ***
13686912-C-A,CGAATG 11531236-C-A,CGAATG 10×GAATG***
2718901-TTG-T 2850860-TTG-T ***
2833178-CTTTT-C,CTTT 2965137-CTTTT-C,CTTT 19×T***
17996127-TACAC-T,TAC 15884247-TACAC-T,TAC P7_Gap 20×AC***
58980228-G-C 56834081-G-C ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

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