Tree Position

R-P312/S116 > Z40481 > ZZ11 > U152/S28 > Y22447 > Y22450

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFGC
X5ZNK
5180883-AT-A 5312842-AT-A +
21822472-G-A 19660586-G-A Y22177 FGC43776 YY+
16079400-C-G 13967520-C-G FGC43766 Y+
16752935-A-G 14641055-A-G FGC43767 YY+
5605988-A-G 5737947-A-G FGC43744 +
5341424-C-T 5473383-C-T FGC43743 +
5224733-C-A 5356692-C-A FGC43742 +
14159822-A-T 12039116-A-T Y22167 FGC43763 YY+
13532197-G-T 11376521-G-T FGC43758 +
13627996-G-C 11472320-G-C FGC43759 +
13981769-T-G 11861063-T-G FGC43760 Y+
28619384-C-A 26473237-C-A FGC43786 +
28699816-T-C 26553669-T-C FGC43787 Y+
4312658-G-C 4444617-G-C FGC43741 +
24882064-G-T 22735917-G-T FGC43784 g1 *
13619944-G-GTA 11464268-G-GTA **
27315873-G-C 25169726-G-C P1_g3 **
13131005-AT-A 10620491-AT-A **
58900034-A-C 56690837-T-G **
8741166-G-T 8873125-G-T **
3705626-CA-C 3837585-CA-C **
7393719-T-C 7525678-T-C **
19329555-C-T 17217675-C-T **
20106032-G-A 17994152-G-A P5_Dst **
20458443-C-T 18296557-C-T P5_Dst **
17731970-G-GA 15620090-G-GA 11×A**
2941873-A-ATATATAT 3073832-A-ATATATAT 7×TATATAT**
4340666-C-T 4472625-C-T **
3776718-A-AAC 3908677-A-AAC 13×AC**
14022081-T-A 11901375-T-A **
27054124-T-C 24907977-T-C FGC93 P1_r4 **
5129733-C-T 5261692-C-T **
25107071-A-C 22960924-A-C g1 ***
25207713-C-A 23061566-C-A P2_r1 ***
25207678-C-A 23061531-C-A P2_r1 ***
24771056-A-T 22624909-A-T P3_b2 ***
25201756-G-T 23055609-G-T g1 ***
25107070-G-T 22960923-G-T g1 ***
24862232-C-A 22716085-C-A P3_b2 ***
25046528-G-T 22900381-G-T g1 ***
25112916-A-G 22966769-A-G g1 ***
25110294-C-A 22964147-C-A g1 ***
25068260-G-T 22922113-G-T g1 ***
25046667-G-T 22900520-G-T g1 ***
22357841-A-T 20195955-A-T DYZ19 ***
25207714-T-C 23061567-T-C P2_r1 ***
25717399-C-A 23571252-C-A P1_b3 ***
26046506-C-T 23900359-C-T P1_Y1 ***
25945002-G-T 23798855-G-T P1_Y1 16×T***
25939167-C-T 23793020-C-T P1_Y1 ***
25847367-A-C 23701220-A-C P1_b3 ***
25845135-C-A 23698988-C-A P1_b3 ***
25845129-G-A 23698982-G-A P1_b3 ***
25814207-A-G 23668060-A-G P1_b3 ***
25812202-T-G 23666055-T-G P1_b3 ***
25791892-G-T 23645745-G-T P1_b3 ***
25791889-G-T 23645742-G-T P1_b3 ***
25791854-A-T 23645707-A-T P1_b3 15×T***
25779437-A-G 23633290-A-G P1_b3 ***
25700675-A-T 23554528-A-T P1_b3 ***
25207803-A-G 23061656-A-G P2_r1 ***
25626292-A-C 23480145-A-C P1_b3 ***
25561633-T-C 23415486-T-C P1_gr1 ***
25521841-T-C 23375694-T-C P1_gr1 ***
25466510-T-A 23320363-T-A P2_r2 ***
25466509-G-A 23320362-G-A P2_r2 ***
25466178-T-A 23320031-T-A P2_r2 ***
25466167-C-A 23320020-C-A P2_r2 ***
25466164-C-A 23320017-C-A P2_r2 ***
25376608-G-T 23230461-G-T P2_r2 ***
25309000-G-A 23162853-G-A P2_r1 ***
24748043-A-T 22601896-A-T P3_b2 ***
25297708-C-A 23151561-C-A P2_r1 ***
25239855-G-T 23093708-G-T P2_r1 ***
24771049-C-T 22624902-C-T P3_b2 ***
24486195-T-G 22340048-T-G ***
24744504-T-C 22598357-T-C P3_b2 ***
22365329-A-G 20203443-A-G DYZ19 ***
22503620-C-T 20341734-C-T DYZ19 ***
22503605-G-T 20341719-G-T DYZ19 ***
22503528-T-G 20341642-T-G DYZ19 ***
22503527-T-A 20341641-T-A DYZ19 ***
22503088-A-C 20341202-A-C DYZ19 ***
22503077-T-G 20341191-T-G DYZ19 ***
22503069-A-T 20341183-A-T DYZ19 ***
22503066-C-T 20341180-C-T DYZ19 ***
22498817-A-C 20336931-A-C DYZ19 ***
22368063-G-C 20206177-G-C DYZ19 ***
22365429-C-T 20203543-C-T DYZ19 ***
22363435-C-G 20201549-C-G DYZ19 ***
22768913-C-T 20607027-C-T ***
22363427-T-A 20201541-T-A DYZ19 ***
22358796-A-C 20196910-A-C DYZ19 ***
22351157-A-T 20189271-A-T DYZ19 ***
22332314-C-A 20170428-C-A DYZ19 ***
22332085-G-A 20170199-G-A DYZ19 ***
22330231-T-C 20168345-T-C DYZ19 ***
22311133-C-A 20149247-C-A DYZ19 ***
22310833-T-A 20148947-T-A DYZ19 ***
22310831-A-T 20148945-A-T DYZ19 ***
22310825-G-A 20148939-G-A DYZ19 ***
22310803-T-A 20148917-T-A DYZ19 ***
22310797-T-A 20148911-T-A DYZ19 ***
22692882-G-T 20530996-G-T ***
22883403-A-C 20721517-A-C ***
24695813-G-T 22549666-G-T P3_b2 ***
23724236-C-A 21562350-C-A ***
24650444-A-G 22504297-A-G P3_b2 ***
24637658-A-G 22491511-A-G P3_t2 ***
24534603-A-C 22388456-A-C P3_t2 ***
26059663-C-A 23913516-C-A P1_Y1 ***
24486182-C-A 22340035-C-A ***
24304849-C-A 22158702-C-A P3_t1 ***
24304800-C-A 22158653-C-A P3_t1 ***
24278329-A-G 22132182-A-G P3_b1 ***
24187906-C-T 22041759-C-T P3_b1 ***
24175124-T-C 22028977-T-C P3_b1 ***
24111439-A-T 21965292-A-T P3_b1 ***
23722849-G-A 21560963-G-A ***
22984018-C-A 20822132-C-A ***
23657356-T-G 21495470-T-G ***
23521026-G-A 21359140-G-A ***
23229632-C-T 21067746-C-T ***
23210395-G-A 21048509-G-A ***
23210385-G-A 21048499-G-A ***
23210380-C-T 21048494-C-T ***
23210375-T-C 21048489-T-C ***
23180931-G-A 21019045-G-A ***
23100444-A-T 20938558-A-T ***
23076422-G-A 20914536-G-A ***
22988153-G-C 20826267-G-C ***
22984108-C-A 20822222-C-A ***
26047999-C-T 23901852-C-T P1_Y1 ***
26463653-G-T 24317506-G-T P1_Y1 ***
26279004-G-A 24132857-G-A P1_Y1 ***
58908808-T-A 56682063-A-T ***
10024349-T-TTC 10186740-T-TTC ***
8575985-G-TT 8707944-G-TT ***
7927084-A-AT 8059043-A-AT ***
4177137-T-TAC 4309096-T-TAC 18×AC***
3588094-G-GTA 3720053-G-GTA 24×TA***
3477851-GGTGTGTGT-G 3609810-GGTGTGTGT-G 17×GT***
17950825-AATATATATATATAT-A 15838945-AATATATATATATAT-A 27×AT***
19138549-CTA-C 17026669-CTA-C ***
8075936-C-CT 8207895-C-CT 17×T***
13661295-G-GGAATT 11505619-G-GGAATT ***
58908857-T-A 56682014-A-T ***
58899919-A-G 56690952-T-C ***
13486692-TAGAGAT-CAGAAAC 11331016-TAGAGAT-CAGAAAC ***
58887942-A-C 56702929-T-G ***
58874579-G-A 56716292-C-T ***
58861901-G-T 56728970-C-A ***
58859115-T-C 56731756-A-G ***
58856700-C-G 56734171-G-C ***
58856695-T-G 56734176-A-C ***
58854685-T-G 56736186-A-C ***
58851747-T-C 56739124-A-G ***
58846546-A-T 56744325-T-A ***
58845083-T-C 56745788-A-G ***
58844472-A-G 56746399-T-C ***
13257287-ATA-TTT 11101611-ATA-TTT ***
13489330-AGGG-GGGA 11333654-AGGG-GGGA ***
58838190-C-G 56752681-G-C ***
22357298-TG-GT 20195412-TG-GT DYZ19 ***
59019511-A-AACAC 56873364-A-AACAC 20×AC***
58899902-TGAGTCCATTCCAT-CGAG 56690956-ATGGAATGGACTCA-CTCG ***
28792975-TGGAA-T 26646828-TGGAA-T ***
27810273-A-AAAGAAAGAAAGG 25664126-A-AAAGAAAGAAAGG P1_Y2 16×AAGG***
27528849-CAA-C 25382702-CAA-C P1_Y2 19×A***
26810756-GCCA-CCCC 24664609-GCCA-CCCC P1_g2 ***
26170515-A-AGAAGAAGAG 24024368-A-AGAAGAAGAG P1_Y1 ***
25565654-GT-G 23419507-GT-G P1_gr1 20×T***
24425334-C-CACAT 22279187-C-CACAT ***
22420964-AGGTA-TTGTG 20259078-AGGTA-TTGTG DYZ19 ***
22358325-GAAGC-TAAGT 20196439-GAAGC-TAAGT DYZ19 ***
22241281-CAC-AAT 20079395-CAC-AAT DYZ19 ***
13489356-TGCGT-GGCGA 11333680-TGCGT-GGCGA ***
21503994-ATTTTTTT-A 19342108-ATTTTTTT-A 19×T***
20470034-AT-A 18308148-AT-A P5_Dst 29×T***
19372289-G-GATAT 17260409-G-GATAT ***
19372287-T-TAGAG 17260407-T-TAGAG ***
17323311-AAGG-A 15211431-AAGG-A ***
15047298-T-TA 12935388-T-TA ***
14866157-G-GTGTT 12754227-G-GTGTT ***
14682740-G-GA 12570806-G-GA 8×A***
14102319-A-ATCTT 11981613-A-ATCTT ***
13829444-G-GGAATT 11708738-G-GGAATT ***
13729376-CATC-AATA 11573700-CATC-AATA ***
58838709-A-T 56752162-T-A ***
58838161-A-C 56752710-T-G ***
26296088-G-A 24149941-G-A P1_Y1 ***
26612532-A-T 24466385-A-T P1_g2 ***
27222138-G-A 25075991-G-A P1_g3 ***
27222096-T-A 25075949-T-A P1_g3 ***
27222082-C-T 25075935-C-T P1_g3 ***
27222068-G-A 25075921-G-A P1_g3 ***
27071863-C-A 24925716-C-A P1_r4 ***
27021260-T-A 24875113-T-A P1_r4 ***
26902092-C-A 24755945-C-A P1_r3 ***
26902085-G-A 24755938-G-A P1_r3 ***
26810696-T-C 24664549-T-C P1_g2 ***
26810681-A-C 24664534-A-C P1_g2 ***
26709026-T-C 24562879-T-C P1_g2 ***
26584367-C-A 24438220-C-A P1_g2 ***
27436544-G-T 25290397-G-T P1_Y2 ***
26566349-T-C 24420202-T-C P1_g2 ***
26507546-C-T 24361399-C-T P1_Y1 ***
22310748-A-C 20148862-A-C DYZ19 ***
26463633-G-T 24317486-G-T P1_Y1 ***
26439802-A-T 24293655-A-T P1_Y1 ***
26421932-A-T 24275785-A-T P1_Y1 ***
26418164-C-A 24272017-C-A P1_Y1 ***
26418115-G-A 24271968-G-A P1_Y1 ***
26352983-A-G 24206836-A-G P1_Y1 ***
26343867-G-T 24197720-G-T P1_Y1 ***
26311251-C-T 24165104-C-T P1_Y1 ***
27436525-T-G 25290378-T-G P1_Y2 ***
27436545-C-G 25290398-C-G P1_Y2 ***
58834686-C-A 56756185-G-T ***
28076479-T-G 25930332-T-G P1_Y2 ***
58834338-C-T 56756533-G-A ***
28491672-C-T 26345525-C-T ***
28487093-A-G 26340946-A-G ***
28428135-A-G 26281988-A-G P1_gr2 ***
28345690-T-C 26199543-T-C P1_gr2 19×AC***
28336655-T-G 26190508-T-G P1_b4 ***
28324193-A-G 26178046-A-G P1_b4 ***
28263073-G-T 26116926-G-T P1_b4 ***
28253388-A-G 26107241-A-G P1_b4 ***
28253354-T-G 26107207-T-G P1_b4 ***
28253325-T-A 26107178-T-A P1_b4 ***
28072499-G-C 25926352-G-C P1_Y2 ***
27483042-G-A 25336895-G-A P1_Y2 ***
28016989-C-T 25870842-C-T P1_Y2 ***
28016915-G-T 25870768-G-T P1_Y2 ***
27864349-A-T 25718202-A-T P1_Y2 ***
27837913-C-T 25691766-C-T P1_Y2 ***
27733692-G-A 25587545-G-A P1_Y2 ***
27644145-C-T 25497998-C-T P1_Y2 ***
27596548-T-G 25450401-T-G P1_Y2 ***
27546088-C-A 25399941-C-A P1_Y2 ***
27529322-A-C 25383175-A-C P1_Y2 ***
27506408-G-A 25360261-G-A P1_Y2 ***
27499156-T-A 25353009-T-A P1_Y2 ***
22310770-C-A 20148884-C-A DYZ19 ***
21351453-C-A 19189567-C-A ***
22310690-A-T 20148804-A-T DYZ19 ***
4821755-T-A 4953714-T-A ***
7026936-G-A 7158895-G-A ***
7001639-A-G 7133598-A-G ***
6955002-A-T 7086961-A-T ***
6779048-C-T 6911007-C-T ***
6747469-C-A 6879428-C-A ***
6687186-A-G 6819145-A-G ***
6556887-C-T 6688846-C-T ***
6366087-T-A 6498046-T-A ***
6288943-C-T 6420902-C-T IR3_Dst ***
5107359-C-A 5239318-C-A ***
4822662-G-A 4954621-G-A ***
4821750-G-A 4953709-G-A ***
7076510-G-A 7208469-G-A ***
4699042-A-T 4831001-A-T ***
4439306-G-A 4571265-G-A ***
3634471-A-G 3766430-A-G ***
3461510-T-C 3593469-T-C ***
3457916-C-T 3589875-C-T ***
2791002-C-T 2922961-C-T PR4200 ***
22347129-A-G 20185243-A-G DYZ19 ***
13489297-C-T 11333621-C-T ***
22310811-T-C 20148925-T-C DYZ19 ***
16266491-T-C 14154611-T-C ***
18892295-A-T 16780415-A-T ***
7076506-G-A 7208465-G-A ***
8064437-A-G 8196396-A-G ***
22324469-A-C 20162583-A-C DYZ19 ***
9910941-C-A 10073332-C-A ***
13489301-T-C 11333625-T-C ***
13489273-T-C 11333597-T-C ***
13440423-C-G 11284747-C-G ***
13425563-A-T 11269887-A-T ***
13393228-C-T 11237552-C-T ***
13389054-C-A 11233378-C-A ***
13261207-T-C 11105531-T-C ***
13253241-A-C 11097565-A-C ***
13223491-A-G 11067815-A-G ***
10092367-G-A 10254758-G-A ***
10052813-G-T 10215204-G-T ***
9781288-G-A 9943679-G-A ***
8174381-A-T 8306340-A-T ***
9625507-A-C 9787898-A-C IR3_Prx ***
9502234-C-T 9664625-C-T ***
9428826-C-A 9591217-C-A ***
9210781-A-G 9373172-A-G ***
9199733-G-A 9362124-G-A ***
9199722-C-T 9362113-C-T ***
9185312-T-C 9347703-T-C ***
8811926-G-A 8943885-G-A ***
8741301-G-T 8873260-G-T ***
8369842-T-C 8501801-T-C ***
8369841-T-A 8501800-T-A ***
16683018-T-G 14571138-T-G ***
13478288-C-T 11322612-C-T ***
13489651-G-T 11333975-G-T ***
59001054-C-A 56854907-C-A ***
13454813-A-ATTCCC 11299137-A-ATTCCC ***
58854644-A-C 56736227-T-G ***
26228780-G-T 24082633-G-T P1_Y1 ***
22297702-T-A 20135816-T-A DYZ19 ***
22297708-T-A 20135822-T-A DYZ19 ***
22297714-T-C 20135828-T-C DYZ19 ***
25256634-G-T 23110487-G-T P2_r1 ***
13743034-T-A 11587358-T-A ***
25256636-G-T 23110489-G-T P2_r1 15×T***
5241125-T-C 5373084-T-C 10×TCCC***
21346975-T-TTATATA 19185089-T-TTATATA 29×TA***
21965774-C-A 19803888-C-A 19×A***
22322194-G-T 20160308-G-T DYZ19 ***
22503118-G-T 20341232-G-T DYZ19 ***
15491941-GTATA-G 13380061-GTATA-G 19×TA***
22224008-T-C 20062122-T-C DYZ19 ***
9302434-G-C 9464825-G-C ***
22347145-C-A 20185259-C-A DYZ19 ***
22351269-G-T 20189383-G-T DYZ19 ***
13848940-AGGAAC-A 11728234-AGGAAC-A ***
22297497-A-T 20135611-A-T DYZ19 ***
22297705-A-G 20135819-A-G DYZ19 ***
22297717-A-T 20135831-A-T DYZ19 ***
27583000-CTT-C 25436853-CTT-C P1_Y2 22×T***
22293343-T-A 20131457-T-A DYZ19 ***
58830725-C-G 56760146-G-C ***
9502246-C-G 9664637-C-G ***
22358175-T-A 20196289-T-A DYZ19 ***
18297504-A-T 16185624-A-T P6_Prx 16×AT***
22351270-T-C 20189384-T-C DYZ19 ***
22310749-G-T 20148863-G-T DYZ19 ***
19138110-C-CTATA 17026230-C-CTATA 9×TA***
26310770-G-T 24164623-G-T P1_Y1 ***
13733531-T-A 11577855-T-A ***
24910853-CAT-C 22764706-CAT-C g1 26×AT***
20426261-T-G 18264375-T-G P5_Dst ***
27483131-TG-CA 25336984-TG-CA P1_Y2 ***
21464204-G-GAAAGAAAA 19302318-G-GAAAGAAAA ***
22358243-G-T 20196357-G-T DYZ19 ***
24388082-A-ATT 22241935-A-ATT ***
22347249-A-C 20185363-A-C DYZ19 ***
13267936-CA-TT 11112260-CA-TT ***
22307957-C-G 20146071-C-G DYZ19 ***
22499354-A-G 20337468-A-G DYZ19 ***
9232750-A-G 9395141-A-G ***
58869733-G-T 56721138-C-A ***
20426278-T-A 18264392-T-A P5_Dst ***
19438259-T-G 17326379-T-G ***
58836974-T-C 56753897-A-G ***
24232077-G-A 22085930-G-A P3_b1 ***
13489367-T-A 11333691-T-A ***
25207776-T-A 23061629-T-A P2_r1 ***
13489327-C-T 11333651-C-T ***
13489664-G-T 11333988-G-T ***
22310665-C-A 20148779-C-A DYZ19 ***
19741187-T-A 17629307-T-A P5_Prx ***
20404507-C-T 18242621-C-T P5_Dst ***
20350748-T-A 18188862-T-A P5_Dst ***
20084980-A-T 17973100-A-T P5_Dst ***
20084892-G-T 17973012-G-T P5_Dst ***
20016730-T-C 17904850-T-C P5_Prx ***
19993237-G-A 17881357-G-A P5_Prx ***
19937218-A-C 17825338-A-C P5_Prx ***
19803057-A-T 17691177-A-T P5_Prx ***
19803054-A-T 17691174-A-T P5_Prx ***
19771526-G-A 17659646-G-A P5_Prx ***
19745155-C-T 17633275-C-T P5_Prx ***
19740840-A-G 17628960-A-G P5_Prx ***
20404567-G-A 18242681-G-A P5_Dst ***
19663075-G-T 17551195-G-T P5_Prx ***
18848017-C-T 16736137-C-T ***
18767235-A-T 16655355-A-T ***
18480402-A-T 16368522-A-T P6_Dst ***
18448208-G-T 16336328-G-T P6_Dst ***
18444272-G-T 16332392-G-T P6_Dst ***
18361671-T-A 16249791-T-A P6_Prx ***
18351765-T-A 16239885-T-A P6_Prx ***
18329102-G-T 16217222-G-T P6_Prx ***
18297989-G-T 16186109-G-T P6_Prx ***
18297958-C-A 16186078-C-A P6_Prx ***
20404550-G-A 18242664-G-A P5_Dst ***
20404597-A-T 18242711-A-T P5_Dst ***
18131803-T-G 16019923-T-G ***
20894618-C-T 18732732-C-T P4_Dst ***
22297464-A-C 20135578-A-C DYZ19 ***
22297214-G-C 20135328-G-C DYZ19 ***
22267246-T-A 20105360-T-A DYZ19 ***
22266123-T-G 20104237-T-G DYZ19 ***
22249104-T-A 20087218-T-A DYZ19 ***
22249082-C-G 20087196-C-G DYZ19 ***
22231970-C-G 20070084-C-G DYZ19 ***
22154799-C-T 19992913-C-T ***
24302816-C-CA 22156669-C-CA P3_t1 24×A***
21149581-G-T 18987695-G-T ***
21096669-T-C 18934783-T-C ***
20803049-T-A 18641163-T-A P4_Gap ***
20404611-C-T 18242725-C-T P5_Dst ***
20778893-G-T 18617007-G-T P4_Prx ***
20646055-A-T 18484169-A-T P4_Prx ***
20610684-A-G 18448798-A-G P5_Dst ***
20568368-T-A 18406482-T-A P5_Dst ***
20558157-G-T 18396271-G-T P5_Dst ***
20553862-C-A 18391976-C-A P5_Dst ***
20501866-T-G 18339980-T-G P5_Dst ***
20426314-T-A 18264428-T-A P5_Dst ***
20426291-T-G 18264405-T-G P5_Dst ***
20426178-C-A 18264292-C-A P5_Dst ***
20426129-A-G 18264243-A-G P5_Dst ***
18131809-C-T 16019929-C-T ***
18131800-T-C 16019920-T-C ***
13559479-T-G 11403803-T-G ***
13745814-G-A 11590138-G-A ***
15644580-G-T 13532700-G-T ***
15636482-G-A 13524602-G-A ***
15626972-G-T 13515092-G-T ***
15297024-C-G 13185123-C-G ***
15148687-A-G 13036774-A-G ***
15142654-T-A 13030741-T-A ***
15142652-G-T 13030739-G-T ***
15121751-C-T 13009838-C-T ***
14258357-A-G 12137651-A-G ***
14204330-A-G 12083624-A-G ***
14047463-A-T 11926757-A-T ***
13745800-A-T 11590124-A-T ***
15797716-G-A 13685836-G-A ***
13745472-G-C 11589796-G-C ***
13743385-C-G 11587709-C-G ***
13743037-A-G 11587361-A-G ***
13742914-T-C 11587238-T-C ***
13733511-T-A 11577835-T-A ***
13726941-G-A 11571265-G-A ***
13726937-A-T 11571261-A-T ***
13726811-C-A 11571135-C-A ***
13598525-C-A 11442849-C-A ***
13598402-A-C 11442726-A-C ***
13563258-C-T 11407582-C-T ***
15797715-A-G 13685835-A-G ***
15834675-G-A 13722795-G-A ***
18131793-G-A 16019913-G-A ***
16814341-C-A 14702461-C-A ***
18131791-G-T 16019911-G-T ***
18131788-A-T 16019908-A-T ***
18131781-A-C 16019901-A-C ***
18054894-G-T 15943014-G-T ***
17855708-G-T 15743828-G-T ***
17797579-T-C 15685699-T-C ***
17728357-G-A 15616477-G-A ***
17520016-C-T 15408136-C-T ***
16978712-T-C 14866832-T-C ***
16978667-C-A 14866787-C-A ***
16834725-C-T 14722845-C-T ***
16701286-A-C 14589406-A-C ***
15883017-C-T 13771137-C-T ***
16683100-C-T 14571220-C-T ***
16683087-A-C 14571207-A-C ***
16683083-T-C 14571203-T-C ***
16683079-T-A 14571199-T-A ***
16683071-T-A 14571191-T-A ***
16683048-A-G 14571168-A-G ***
16683027-G-A 14571147-G-A ***
16266505-A-G 14154625-A-G ***
16266486-T-C 14154606-T-C ***
16266485-T-C 14154605-T-C ***
16169584-T-G 14057704-T-G ***
59019552-A-ACACAC 56873405-A-ACACAC ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

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