Tree Position

A0-T-YP2191 > P305 > L413/PF1409/V31 > M168/PF1416 > P143 > M89/PF2746 > F1329/M3658 > F929 > L15/M523/S137 > M429/P125/PF353 > M304 > Exact position not yet finalized.

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
7870585-C-A 8002544-C-A ZS8959 YY+
17719223-AG-A 15607343-AG-A +
18960272-A-T 16848392-A-T ZS4424 YY+
18648663-A-G 16536783-A-G ZS7760 YY+
18124937-G-A 16013057-G-A ZS8969 YY+
18072155-C-T 15960275-C-T ZS4419 YY+
22761747-C-T 20599861-C-T S7323CTS10758 YY+
17790351-G-T 15678471-G-T ZS4418 YY+
17656115-C-T 15544235-C-T ZS4417 YY+
8156223-T-TA 8288182-T-TA Y2318 9×A+
17421259-T-C 15309379-T-C ZS4415 YY+
17188923-G-C 15077043-G-C ZS4414 YY+
17031364-G-A 14919484-G-A ZS4413 YY+
16932562-T-G 14820682-T-G ZS8968 YY+
16581869-T-C 14469989-T-C ZS4412 YY+
16418738-T-A 14306858-T-A ZS8967 YY+
19003884-T-C 16892004-T-C ZS4425 YY+
19061717-G-A 16949837-G-A ZS4426 YY+
16058672-G-T 13946792-G-T ZS4411 YY+
22231547-T-A 20069661-T-A ZS8972 DYZ19 +
22432822-G-A 20270936-G-A ZS8974 DYZ19 +
22345147-G-T 20183261-G-T ZS4439 DYZ19 +
22300440-T-C 20138554-T-C ZS4437 DYZ19 +
13384581-A-C 11228905-A-C ZS4398 +
22277567-T-A 20115681-T-A ZS8973 DYZ19 +
17494730-T-G 15382850-T-G FGC20563ZS4416 FGC20566 YY+
21971710-G-A 19809824-G-A ZS8971 YY+
19074496-C-T 16962616-C-T ZS8970 YY+
21608099-C-T 19446213-C-T ZS4431 YY+
21302278-T-C 19140392-T-C ZS4430 YY+
19450177-G-C 17338297-G-C ZS4429 YY+
19443777-C-T 17331897-C-T ZS4428 YY+
19220021-CAG-C 17108141-CAG-C +
19092460-T-C 16980580-T-C ZS4427 YY+
16301468-G-T 14189588-G-T ZS8966 YY+
18642438-G-T 16530558-G-T ZS4422 YY+
22478548-G-C 20316662-G-C ZS4441 DYZ19 +
8638838-A-G 8770797-A-G ZS4391 YY+
7661055-G-A 7793014-G-A ZS4383 YY+
7842079-C-G 7974038-C-G PF7264 YY+
7879209-GT-G 8011168-GT-G +
7912668-A-G 8044627-A-G ZS4384 YY+
8313726-C-T 8445685-C-T ZS4388 YY+
8537175-C-A 8669134-C-A ZS8960 YY+
8672324-C-A 8804283-C-A ZS4392 YY+
7323317-T-G 7455276-T-G ZS4380 YY+
8808041-A-C 8940000-A-C ZS4393 YY+
8834145-C-G 8966104-C-G ZS4394 YY+
8872074-G-A 9004033-G-A ZS8961 Y+
13685552-A-T 11529876-A-T ZS4401 +
9447594-T-C 9609985-T-C ZS8962 YY+
9814475-AC-A 9976866-AC-A +
7570822-CT-C 7702781-CT-C +
7106611-T-C 7238570-T-C ZS4379 YY+
15933839-C-T 13821959-C-T ZS4410 YY+
14584346-C-G 12472546-C-G ZS4404 YY+
7683151-G-A 7815110-G-A ZS8958 YY+
15560456-T-A 13448576-T-A ZS8964 YY+
15441561-C-T 13329681-C-T ZS4409 YY+
15240103-A-C 13128189-A-C ZS4407 Y+
15050472-G-A 12938563-G-A ZS4406 YY+
14710271-G-T 12598338-G-T ZS4405 YY+
14541987-G-A 12430188-G-A ZS8963 YY+
7055950-G-T 7187909-G-T ZS4378 YY+
14415669-CTATA-C 12294966-CTATA-C +
14229460-C-T 12108754-C-T ZS4403 YY+
2690314-G-A 2822273-G-A ZS8957 YY+
4872897-C-G 5004856-C-G ZS4374 +
14227519-T-C 12106813-T-C ZS7752 YY+
14052631-G-A 11931925-G-A ZS4402 YY+
6931939-A-T 7063898-A-T ZS4376 YY+
22462310-T-C 20300424-T-C A4318 DYZ19 +
9818299-T-C 9980690-T-C ZS4396 YY+
23315674-T-A 21153788-T-A ZS8978 YY+
23140408-C-T 20978522-C-T ZS4444 YY+
23013416-T-C 20851530-T-C ZS8977 YY+
15707766-G-A 13595886-G-A ZS8965 YY+
23778688-T-A 21616802-T-A ZS8982 Y+
22863347-C-T 20701461-C-T PF7263 YY+
23650833-G-A 21488947-G-A ZS8981 Y+
23241391-A-G 21079505-A-G ZS4445 Y+
23590762-A-G 21428876-A-G ZS8980 YY+
22843491-A-G 20681605-A-G ZS8976 YY+
22462538-T-C 20300652-T-C DYZ19 +
22792144-C-T 20630258-C-T YP3636 ZS4443 FGC27747 YY+
23379428-C-T 21217542-C-T ZS8979 YY+
23554573-G-A 21392687-G-A ZS4446 YY+
24271832-C-G 22125685-C-G ZS4450 P3_b1 +
24412283-G-A 22266136-G-A ZS4451 Y+
23554612-A-T 21392726-A-T ZS5136 YY+
22762640-C-T 20600754-C-T ZS4442 YY+
23554587-T-C 21392701-T-C ZS4447 YY+
7140242-A-C 7272201-A-C ZS7743 **
23554619-G-A 21392733-G-A **
23554617-C-G 21392731-C-G ZS10031 **
23554593-G-A 21392707-G-A **
22223904-C-A 20062018-C-A DYZ19 **
20244301-TAAA-T 18082415-TAAA-T P5_Dst **
23554592-T-C 21392706-T-C **
22289916-C-A 20128030-C-A DYZ19 **
5190993-T-A 5322952-T-A Z37031 **
16490283-T-C 14378403-T-C CTS5814 **
22512292-G-T 20350406-G-T DYZ19 **
23061583-G-A 20899697-G-A ZS7766 **
3329188-T-G 3461147-T-G **
26995764-G-A 24849617-G-A FGC49201 P1_r4 **
22336895-C-T 20175009-C-T FGC37460 DYZ19 **
13859635-AC-A 11738929-AC-A **
13409316-C-T 11253640-C-T FGC1658 **
22449031-C-G 20287145-C-G DYZ19 **
24947519-T-C 22801372-T-C g1 ***
25023379-C-T 22877232-C-T g1 ***
25136543-A-G 22990396-A-G g1 ***
25032262-T-C 22886115-T-C g1 ***
25143200-G-A 22997053-G-A g1 ***
25074107-A-G 22927960-A-G g1 ***
25077268-T-C 22931121-T-C g1 ***
25090593-C-T 22944446-C-T g1 ***
25104612-G-A 22958465-G-A g1 ***
25145299-G-A 22999152-G-A g1 ***
25049440-G-T 22903293-G-T g1 ***
22509375-T-C 20347489-T-C DYZ19 ***
25159157-G-A 23013010-G-A g1 ***
25575555-AGCAGGCCAG-A 23429408-AGCAGGCCAG-A P1_gr1 ***
26955796-C-T 24809649-C-T P1_r3 ***
26945903-A-T 24799756-A-T P1_r3 ***
13699524-T-G 11543848-T-G ***
13704372-TGGAAC-T,TAGAAT 11548696-TGGAAC-T,TAGAAT ***
26931584-G-A 24785437-G-A P1_r3 ***
26878777-C-T 24732630-C-T P1_r3 ***
26314165-C-T 24168018-C-T P1_Y1 ***
26264894-C-T 24118747-C-T P1_Y1 ***
26193455-G-A 24047308-G-A P1_Y1 ***
26083819-T-A 23937672-T-A P1_Y1 ***
25998267-C-G 23852120-C-G P1_Y1 ***
25421244-C-T 23275097-C-T P2_r2 ***
25170329-T-C 23024182-T-C g1 ***
13714498-C-A 11558822-C-A ***
25404035-A-G 23257888-A-G P2_r2 ***
25386128-G-T 23239981-G-T P2_r2 ***
25381350-G-T 23235203-G-T P2_r2 ***
13722147-T-A 11566471-T-A ***
25341411-C-T 23195264-C-T P2_r1 ***
24914586-G-T 22768439-G-T g1 ***
25324075-T-C 23177928-T-C P2_r1 ***
25304937-C-A 23158790-C-A P2_r1 ***
25297047-T-C 23150900-T-C P2_r1 ***
25180195-T-A 23034048-T-A g1 ***
24946828-A-G 22800681-A-G g1 ***
23665747-G-A 21503861-G-A ***
16109768-T-C 13997888-T-C P8_Prx ***
22310688-T-A 20148802-T-A DYZ19 ***
22243345-G-T 20081459-G-T ZS7737 DYZ19 ***
22248865-C-G 20086979-C-G DYZ19 ***
22248912-G-A 20087026-G-A DYZ19 ***
22251022-G-C 20089136-G-C DYZ19 ***
22253014-G-A 20091128-G-A DYZ19 ***
22265726-A-C 20103840-A-C DYZ19 ***
22291608-T-C 20129722-T-C DYZ19 ***
22309630-A-T 20147744-A-T DYZ19 ***
22343964-T-G 20182078-T-G DYZ19 ***
22219524-T-A 20057638-T-A DYZ19 ***
22358605-A-T 20196719-A-T DYZ19 ***
22362842-T-G 20200956-T-G DYZ19 ***
22433738-C-G 20271852-C-G DYZ19 ***
22453822-G-T 20291936-G-T DYZ19 ***
22459750-G-A 20297864-G-A DYZ19 ***
22460579-T-A 20298693-T-A DYZ19 ***
22461409-T-A 20299523-T-A A4313 DYZ19 ***
22461435-A-G 20299549-A-G A4315 DYZ19 ***
22464415-C-T 20302529-C-T DYZ19 ***
22222940-C-A 20061054-C-A DYZ19 ***
20821939-AGTGTGTGT-A 18660053-AGTGTGTGT-A P4_Gap 16×GT***
24902958-C-T 22756811-C-T ZS2180 g1 ***
23676291-G-A 21514405-G-A ***
24655692-A-C 22509545-A-C P3_b2 ***
24281042-T-A 22134895-T-A P3_t1 ***
24236910-A-G 22090763-A-G P3_b1 ***
24223006-T-G 22076859-T-G P3_b1 ***
24185296-T-C 22039149-T-C P3_b1 ***
24138627-A-C 21992480-A-C P3_b1 ***
24112452-C-G 21966305-C-G P3_b1 ***
17988934-G-T 15877054-G-T FGC38582 P7_Prx ***
18272066-A-G 16160186-A-G ZS5640 P6_Prx ***
20735386-C-A 18573500-C-A P4_Prx ***
22498592-G-T 20336706-G-T DYZ19 ***
19592122-G-C 17480242-G-C P5_Prx ***
19832733-A-C 17720853-A-C P5_Prx ***
19841941-G-A 17730061-G-A P5_Prx ***
19935469-ATTT-A 17823589-ATTT-A P5_Prx ***
20031793-T-A 17919913-T-A ZS4509 P5_Prx ***
20668810-T-C 18506924-T-C P4_Prx ***
22289385-G-A,C 20127499-G-A,C DYZ19 ***
4114451-CAG-C 4246410-CAG-C 19×AG***
9361864-C-T 9524255-C-T ***
22277829-C-A 20115943-C-A FGC22014 DYZ19 ***
13833374-AT-A,AA 11712668-AT-A,AA ***
9334568-C-T 9496959-C-T ***
22504086-T-A 20342200-T-A DYZ19 ***
13869643-C-T 11748937-C-T ***
13716211-T-A 11560535-T-A ***
13446552-T-C 11290876-T-C ***
13325778-T-A 11170102-T-A ***
22258730-T-C 20096844-T-C DYZ19 ***
22244643-C-T 20082757-C-T DYZ19 ***
13437662-C-T 11281986-C-T ***
22510068-T-G 20348182-T-G DYZ19 ***
28814440-A-G 26668293-A-G ***
28814439-A-T 26668292-A-T ***
23899738-G-A 21737852-G-A ***
23899733-T-C 21737847-T-C ***
13846434-G-T 11725728-G-T ***
22366410-T-C 20204524-T-C DYZ19 ***
13712439-C-A 11556763-C-A ***
22366282-A-C 20204396-A-C DYZ19 ***
9329863-C-A 9492254-C-A ZS2105 ***
13141127-C-CGGGTT 10630613-C-CGGGTT ***
26252613-A-T 24106466-A-T P1_Y1 ***
13740173-T-C 11584497-T-C ***
13294509-GTT-G 11138833-GTT-G 12×T***
23898814-G-A 21736928-G-A ***
23898798-C-A 21736912-C-A ***
13325752-C-T 11170076-C-T ***
9303347-C-T 9465738-C-T ***
13433622-T-C 11277946-T-C ***
22477329-G-C 20315443-G-C DYZ19 ***
7554786-AACACAC-A 7686745-AACACAC-A 22×AC***
23899752-T-G 21737866-T-G ***
22451242-T-C 20289356-T-C DYZ19 ***
9981449-C-G 10143840-C-G ***
22343882-C-T 20181996-C-T DYZ19 ***
13489620-C-CA 11333944-C-CA ***
13325816-G-A 11170140-G-A ***
22453699-G-C 20291813-G-C DYZ19 ***
22460582-A-T 20298696-A-T FGC8287 DYZ19 ***
10038840-G-A 10201231-G-A ***
13705062-G-A 11549386-G-A ***
13696168-A-T 11540492-A-T ***
13696161-A-C 11540485-A-C ***
13694056-T-C 11538380-T-C ***
13693626-A-G 11537950-A-G ***
13693466-G-C 11537790-G-C ***
13690850-A-T 11535174-A-T ***
9181096-TATATAC-T 9343487-TATATAC-T ***
13801138-G-GTGCTC 11680432-G-GTGCTC ***
25777840-C-CAAT 23631693-C-CAAT P1_b3 14×AAT***
22361882-T-A 20199996-T-A DYZ19 ***
13869594-C-G 11748888-C-G ***
13489540-G-A 11333864-G-A ***
13445646-T-C 11289970-T-C ***
9986521-T-G 10148912-T-G YSC0000098 ***
9986489-T-C 10148880-T-C YSC0000096 ***
13706124-G-T 11550448-G-T ***
13801153-G-C 11680447-G-C ***
22277862-G-A 20115976-G-A FGC22015 DYZ19 ***
28812290-T-G 26666143-T-G ***
13458439-A-T 11302763-A-T ***
22357511-T-A 20195625-T-A A4171 DYZ19 ***
22366454-A-G 20204568-A-G DYZ19 ***
13833376-G-A 11712670-G-A ***
13433618-T-A 11277942-T-A ***
22509954-T-A 20348068-T-A DYZ19 ***
28812293-G-T 26666146-G-T ***
28793842-TG-T 26647695-TG-T ***
13869705-G-A 11748999-G-A ***
28792869-T-G 26646722-T-G ***
28791436-G-T 26645289-G-T ***
28791433-T-G 26645286-T-G ***
28791411-T-C 26645264-T-C ***
24807641-A-G 22661494-A-G BY2292 P3_b2 ***
22509104-A-G 20347218-A-G DYZ19 ***
22366407-T-A 20204521-T-A DYZ19 ***
22358384-G-T 20196498-G-T DYZ19 ***
25411346-A-T 23265199-A-T P2_r2 ***
22244056-G-C 20082170-G-C ZS4702 DYZ19 ***
9356218-G-T 9518609-G-T ***
22287058-C-T 20125172-C-T DYZ19 ***
9997665-T-C 10160056-T-C ***
24600442-C-CTT,T 22454295-C-CTT,T P3_t2 18×TCTT***
19785950-G-A 17674070-G-A P5_Prx ***
26280518-G-A 24134371-G-A P1_Y1 ***
22455601-T-A 20293715-T-A DYZ19 ***
9199714-A-C 9362105-A-C ***
9197624-G-A 9360015-G-A ***
17277481-T-TCA 15165601-T-TCA 20×CA***
13137353-A-ATTCTG 10626839-A-ATTCTG ***
25265708-A-AACT 23119561-A-AACT P2_r1 9×ACT***
13702448-A-G 11546772-A-G ***
58978571-G-A 56832424-G-A ***
13323852-C-CTG 11168176-C-CTG ***
28813906-T-G 26667759-T-G ***
23256605-T-TA 21094719-T-TA 11×A***
6265215-T-TAC 6397174-T-TAC IR3_Dst ***
9997681-C-CTTT 10160072-C-CTTT ***
22305394-G-C 20143508-G-C DYZ19 ***
26172782-A-G 24026635-A-G P1_Y1 ***
9961051-T-A,G 10123442-T-A,G ***
9297878-A-G 9460269-A-G ***
9195194-A-G 9357585-A-G ***
9986472-A-C 10148863-A-C YSC0000095 ***
7479179-C-T 7611138-C-T FGC38646 IR1_L ***
6206488-A-G 6338447-A-G IR3_Dst ***
6133693-GC-G 6265652-GC-G ***
13698173-G-A 11542497-G-A ***
25275098-A-AT 23128951-A-AT P2_r1 12×T***
19879019-C-T 17767139-C-T P5_Prx ***
22241070-G-A 20079184-G-A DYZ19 ***
24813814-C-T 22667667-C-T P3_b2 ***
22454906-T-A 20293020-T-A DYZ19 ***
9292541-T-C 9454932-T-C ***
7485758-G-A 7617717-G-A IR1_L ***
28795544-G-C 26649397-G-C ***
9214986-C-T 9377377-C-T ***
25204475-A-ATTAT 23058328-A-ATTAT g1 5×TTAT***
26075945-G-A 23929798-G-A P1_Y1 ***
25108897-A-G 22962750-A-G FGC13742Z18598 g1 ***
22305383-C-T 20143497-C-T DYZ19 ***
28807304-T-A 26661157-T-A ***
22452093-A-G 20290207-A-G DYZ19 ***
13702433-C-T 11546757-C-T ***
22451228-C-T 20289342-C-T DYZ19 ***
22364944-A-T 20203058-A-T DYZ19 ***
22361637-T-G 20199751-T-G DYZ19 ***
18832757-T-TA 16720877-T-TA 12×A***
28807293-G-C 26661146-G-C ***
9955401-T-G 10117792-T-G ***
21549943-CTT-C 19388057-CTT-C 13×T***
22291424-C-A 20129538-C-A DYZ19 ***
9952390-CCAGA-C 10114781-CCAGA-C ***
22310590-A-C 20148704-A-C DYZ19 ***
18083146-CTGTG-C 15971266-CTGTG-C 11×TG***
22291877-T-G 20129991-T-G DYZ19 ***
22291858-G-A 20129972-G-A DYZ19 ***
24953282-G-A 22807135-G-A g1 ***
24807644-C-T 22661497-C-T P3_b2 ***
25870095-G-T 23723948-G-T P1_Y1 ***
22247978-C-T 20086092-C-T DYZ19 ***
25848162-G-C 23702015-G-C FGC37537 P1_b3 ***
25155089-C-T 23008942-C-T g1 ***
25116612-C-A 22970465-C-A ZS2195 g1 ***
22359924-T-C 20198038-T-C DYZ19 ***
22291696-G-C 20129810-G-C BY3720 DYZ19 ***
22291503-G-T 20129617-G-T DYZ19 ***
22251110-G-A 20089224-G-A DYZ19 ***
20758392-T-G 18596506-T-G BY1692 P4_Prx ***
6152672-C-A 6284631-C-A FGC37597 IR3_Dst ***
20647670-T-A 18485784-T-A ZS5327 P4_Prx ***
19956731-T-C 17844851-T-C P5_Prx ***
19896460-T-C 17784580-T-C BY1619 P5_Prx ***
19794113-T-A 17682233-T-A ZS3780 P5_Prx ***
19751232-G-A 17639352-G-A FGC13886 Z18276 P5_Prx ***
18272190-C-T 16160310-C-T P6_Prx ***
9330894-A-C 9493285-A-C ***
9314713-A-G 9477104-A-G ***
28796039-G-C 26649892-G-C ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

Kit: 2381701080139678486707941758
Used in age calculations1080139678486707941758
Counts of SNPs7070
Variant counts last updated 2018-03-01 23:01:02.

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