Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > ZZ10 > Z255/S219 > Z16437 > A557 > A10886 > Z29008 > A10891

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
498614
FGC-BigY
JZW58
Manual
Edits
16559827-C-A 14447947-C-A **
21604088-C-A 19442202-C-A **
4115830-G-A 4247789-G-A **
19297932-C-A 17186052-C-A **
14366743-C-A 12246038-C-A **
2789064-C-T 2921023-C-T **
9675376-G-A 9837767-G-A IR3_Prx **
23184984-C-A 21023098-C-A **
13461565-T-A 11305889-T-A **
22800291-C-A 20638405-C-A **
5179306-C-A 5311265-C-A **
28775281-G-T 26629134-G-T **
10034247-C-A 10196638-C-A **
28478888-A-G 26332741-A-G **
7204983-C-A 7336942-C-A BY17694 **
4862724-C-T 4994683-C-T PR4372 **
22659473-C-A 20497587-C-A **
13200532-C-A 11044856-C-A **
15113663-C-A 13001750-C-A **
14250200-A-T 12129494-A-T BY17784 **
15557164-C-G 13445284-C-G **
8092075-C-A 8224034-C-A **
16701821-C-A 14589941-C-A **
7862126-G-A 7994085-G-A **
8720514-C-A 8852473-C-A **
6694284-A-G 6826243-A-G **
17470885-C-A 15359005-C-A **
16057102-T-A 13945222-T-A **
24934296-G-A 22788149-G-A g1 ***
25434062-G-A 23287915-G-A P2_r2 ***
25434012-G-T 23287865-G-T P2_r2 ***
23231413-T-A 21069527-T-A ***
22991279-C-A 20829393-C-A ***
25434042-A-G 23287895-A-G P2_r2 ***
22811030-C-A 20649144-C-A ***
25453412-C-A 23307265-C-A P2_r2 ***
22798045-T-A 20636159-T-A ***
22788848-T-C 20626962-T-C ***
23360740-C-A 21198854-C-A ***
22732718-C-A 20570832-C-A ***
25556298-A-T 23410151-A-T P1_gr1 ***
25560093-G-T 23413946-G-T P1_gr1 ***
22615209-C-T 20453323-C-T ***
22520585-G-A 20358699-G-A ***
23259161-G-T 21097275-G-T ***
23512844-G-T 21350958-G-T ***
23360861-T-C 21198975-T-C ***
24582352-C-T 22436205-C-T P3_t2 17×T***
24983292-T-G 22837145-T-G g1 ***
24885676-A-G 22739529-A-G g1 ***
24878137-G-T 22731990-G-T g1 ***
25124216-A-C 22978069-A-C g1 ***
24844065-A-C 22697918-A-C P3_b2 ***
24797622-A-C 22651475-A-C P3_b2 ***
25232275-T-C 23086128-T-C P2_r1 ***
24696130-G-C 22549983-G-C P3_b2 ***
24695964-C-T 22549817-C-T P3_b2 ***
22503993-G-T 20342107-G-T DYZ19 ***
24934272-G-A 22788125-G-A g1 ***
24458560-C-A 22312413-C-A ***
24445450-C-T 22299303-C-T ***
24330263-G-A 22184116-G-A P3_t1 ***
25273877-G-T 23127730-G-T P2_r1 ***
24043879-T-A 21897732-T-A ***
24043835-A-G 21897688-A-G ***
24043202-A-G 21897055-A-G ***
23785115-A-T 21623229-A-T ***
23723544-C-A 21561658-C-A 27×AT***
22504526-C-A 20342640-C-A DYZ19 ***
22295859-A-T 20133973-A-T DYZ19 ***
22490114-G-A 20328228-G-A DYZ19 ***
18636583-C-A 16524703-C-A ***
19537802-C-A 17425922-C-A ***
19088150-A-G 16976270-A-G ***
18991111-G-A 16879231-G-A ***
18930578-T-G 16818698-T-G ***
18906517-C-T 16794637-C-T ***
18890871-C-T 16778991-C-T ***
18766813-G-A 16654933-G-A ***
18743385-C-T 16631505-C-T ***
18692554-C-A 16580674-C-A ***
18645985-G-A 16534105-G-A ***
18370845-A-T 16258965-A-T P6_Prx ***
19601953-C-G 17490073-C-G P5_Prx ***
18336397-T-A 16224517-T-A P6_Prx ***
18190401-T-A 16078521-T-A ***
18190345-A-G 16078465-A-G ***
18136200-G-A 16024320-G-A ***
17716901-T-C 15605021-T-C ***
17584324-G-C 15472444-G-C ***
17367799-A-G 15255919-A-G ***
17226275-G-A 15114395-G-A ***
17103545-G-T 14991665-G-T ***
16625623-T-C 14513743-T-C ***
16618875-C-A 14506995-C-A ***
19593651-C-T 17481771-C-T P5_Prx ***
19616609-A-T 17504729-A-T P5_Prx ***
22434035-G-T 20272149-G-T DYZ19 ***
21084628-T-A 18922742-T-A ***
22430105-T-A 20268219-T-A DYZ19 ***
22364774-G-A 20202888-G-A DYZ19 ***
22329072-A-T 20167186-A-T DYZ19 ***
22207267-C-A 20045381-C-A ***
22127948-T-C 19966062-T-C ***
22092922-C-A 19931036-C-A ***
21920673-G-T 19758787-G-T ***
21770051-G-A 19608165-G-A ***
21473774-C-A 19311888-C-A ***
21321739-C-A 19159853-C-A ***
21171897-C-A 19010011-C-A ***
21049144-C-A 18887258-C-A ***
19679301-G-T 17567421-G-T P5_Prx ***
20947236-G-T 18785350-G-T P4_Dst ***
20865607-C-A 18703721-C-A P4_Dst ***
20751042-G-A 18589156-G-A P4_Prx 13×A***
20654147-T-G 18492261-T-G P4_Prx ***
20645953-C-T 18484067-C-T P4_Prx ***
20447430-T-G 18285544-T-G P5_Dst ***
20434735-T-A 18272849-T-A P5_Dst ***
20243527-T-A 18081641-T-A P5_Dst ***
19943716-T-G 17831836-T-G P5_Prx ***
19892976-G-T 17781096-G-T P5_Prx ***
19764572-T-C 17652692-T-C P5_Prx ***
25592407-T-A 23446260-T-A P1_gr1 ***
58823383-C-T 56767488-G-A ***
25592416-C-A 23446269-C-A P1_gr1 ***
6024572-ATG-A 6156531-ATG-A ***
13437221-C-CCT 11281545-C-CCT ***
13143366-GCTCTGTCACT-ACTGTCACACC 10632852-GCTCTGTCACT-ACTGTCACACC ***
13143330-CATA-TAT 10632816-CATA-TAT ***
13140583-CATTAA-AATTCC 10630069-CATTAA-AATTCC ***
10061586-CAAACT-AAAATA 10223977-CAAACT-AAAATA ***
10055451-TGC-AGT 10217842-TGC-AGT ***
10055401-TG-CA 10217792-TG-CA ***
10055372-TG-CA 10217763-TG-CA ***
9944144-AC-G 10106535-AC-G ***
9351210-CTATG-ATATA 9513601-CTATG-ATATA ***
13857969-CCT-TCA 11737263-CCT-TCA ***
6403654-AC-GG 6535613-AC-GG ***
13461541-CA-TG 11305865-CA-TG ***
58972026-CC-AT 56825879-CC-AT ***
58989599-G-T 56843452-G-T ***
58985046-G-A 56838899-G-A ***
58912457-C-G 56678414-G-C ***
58855326-T-G 56735545-A-C ***
58833928-C-T 56756943-G-A ***
58830298-C-A 56760573-G-T ***
58826951-A-C 56763920-T-G ***
58823510-A-T 56767361-T-A ***
58823431-C-T 56767440-G-A ***
58822324-T-A 56768547-A-T ***
58819709-A-G 56771162-T-C ***
13437248-GG-AA 11281572-GG-AA ***
13471169-AG-CA 11315493-AG-CA ***
28588269-G-T 26442122-G-T ***
22311220-AGAG-TGAC 20149334-AGAG-TGAC DYZ19 ***
58823424-TG-GA 56767446-CA-TC ***
28315906-ATGTT-TTGTG 26169759-ATGTT-TTGTG P1_b4 ***
27958812-AAAAC-A 25812665-AAAAC-A P1_Y2 4×AAAC***
27679491-A-ATG 25533344-A-ATG P1_Y2 20×TG***
27546738-CTTTC-TTTTT 25400591-CTTTC-TTTTT P1_Y2 ***
27062951-AGTA-G 24916804-AGTA-G P1_r4 ***
26912535-CAA-C 24766388-CAA-C P1_r3 17×A***
25466390-AGTTTG-A 23320243-AGTTTG-A P2_r2 ***
25417487-CTTGA-TTTGT 23271340-CTTGA-TTTGT P2_r2 ***
25093550-AGGC-GGGG 22947403-AGGC-GGGG g1 ***
24575897-TTTTG-T 22429750-TTTTG-T P3_t2 ***
22367474-TAG-GAT 20205588-TAG-GAT DYZ19 ***
21623838-G-TT 19461952-G-TT ***
13480739-GA-AT 11325063-GA-AT ***
20989230-GT-AA 18827344-GT-AA P4_Dst ***
19696447-AG-A 17584567-AG-A P5_Prx ***
18447504-C-CA 16335624-C-CA P6_Dst 8×A***
18321273-CTG-TTT 16209393-CTG-TTT P6_Prx ***
17963685-ATT-A 15851805-ATT-A 14×T***
17081259-AT-A 14969379-AT-A ***
14604590-C-CTT 12492792-C-CTT 21×T***
14080066-ATATATATATATATATATATAT-A 11959360-ATATATATATATATATATATAT-A ***
13860364-AGAT-GAAA 11739658-AGAT-GAAA ***
13858769-CGAAT-TGAAC 11738063-CGAAT-TGAAC ***
13858009-CGGAATC-TGCAATG 11737303-CGGAATC-TGCAATG ***
13842730-GTGGAATGGAA-G 11722024-GTGGAATGGAA-G 12×TGGAA***
28775369-C-A 26629222-C-A ***
28542981-A-G 26396834-A-G ***
25602261-G-A 23456114-G-A P1_gr1 ***
26505360-T-G 24359213-T-G P1_Y1 ***
26981927-T-G 24835780-T-G P1_r4 ***
26965262-T-G 24819115-T-G P1_r3 ***
26897756-C-A 24751609-C-A P1_r3 ***
26887375-T-G 24741228-T-G P1_r3 ***
26887368-A-G 24741221-A-G P1_r3 ***
26887353-G-T 24741206-G-T P1_r3 ***
26809364-T-C 24663217-T-C P1_g2 ***
26761021-G-T 24614874-G-T P1_g2 ***
26748798-A-G 24602651-A-G P1_g2 ***
26631885-T-G 24485738-T-G P1_g2 ***
26605183-A-T 24459036-A-T P1_g2 ***
26505373-T-A 24359226-T-A P1_Y1 ***
26505350-T-G 24359203-T-G P1_Y1 ***
27016192-A-G 24870045-A-G P1_r4 ***
26463221-C-T 24317074-C-T P1_Y1 ***
26423097-G-T 24276950-G-T P1_Y1 ***
26316357-G-T 24170210-G-T P1_Y1 ***
26254947-C-A 24108800-C-A P1_Y1 ***
26101447-C-A 23955300-C-A P1_Y1 ***
25908524-G-T 23762377-G-T P1_Y1 ***
25883664-C-T 23737517-C-T P1_Y1 ***
25873498-C-T 23727351-C-T P1_Y1 ***
25845323-C-T 23699176-C-T P1_b3 ***
16598611-A-C 14486731-A-C ***
25677305-G-T 23531158-G-T P1_b3 ***
25654431-T-C 23508284-T-C P1_b3 ***
26992964-G-A 24846817-G-A P1_r4 ***
27033181-C-T 24887034-C-T P1_r4 ***
28315950-C-T 26169803-C-T P1_b4 ***
27872534-G-A 25726387-G-A P1_Y2 ***
28315944-G-A 26169797-G-A P1_b4 ***
28315879-A-G 26169732-A-G P1_b4 ***
28310939-T-C 26164792-T-C P1_b4 ***
28293290-A-C 26147143-A-C P1_b4 ***
28293287-A-C 26147140-A-C P1_b4 ***
28204142-G-C 26057995-G-C P1_b4 ***
28204111-C-T 26057964-C-T P1_b4 ***
28170640-G-T 26024493-G-T P1_b4 ***
27968444-C-T 25822297-C-T P1_Y2 ***
27968430-A-C 25822283-A-C P1_Y2 ***
27968421-C-T 25822274-C-T P1_Y2 ***
27968414-C-T 25822267-C-T P1_Y2 ***
27641739-G-A 25495592-G-A P1_Y2 ***
27056861-G-T 24910714-G-T P1_r4 ***
27633976-G-T 25487829-G-T P1_Y2 ***
27576195-G-T 25430048-G-T P1_Y2 ***
27424138-G-A 25277991-G-A P1_g3 ***
27295448-C-A 25149301-C-A P1_g3 ***
27194800-C-A 25048653-C-A P1_g3 ***
27169266-G-T 25023119-G-T P1_g3 ***
27162357-C-A 25016210-C-A P1_g3 ***
27162097-G-T 25015950-G-T P1_g3 ***
27095777-G-A 24949630-G-A P1_r4 ***
27095674-G-A 24949527-G-A P1_r4 ***
27077150-G-A 24931003-G-A P1_r4 ***
27077128-G-T 24930981-G-T P1_r4 ***
25827338-A-G 23681191-A-G P1_b3 ***
16113368-T-G 14001488-T-G P8_Prx ***
16572701-C-A 14460821-C-A ***
13143432-TT-GC 10632918-TT-GC ***
10044053-A-T 10206444-A-T ***
13461542-A-G 11305866-A-G ***
10044052-T-C 10206443-T-C ***
10061624-G-T 10224015-G-T ***
14118259-C-T 11997553-C-T M9085 ***
13489632-CCCA-ACC 11333956-CCCA-ACC ***
25626741-C-A 23480594-C-A P1_b3 ***
24797590-A-C 22651443-A-C P3_b2 ***
18011030-T-G 15899150-T-G P7_Dst ***
27077143-A-T 24930996-A-T P1_r4 ***
24043817-C-A 21897670-C-A ***
26558033-A-C 24411886-A-C P1_g2 ***
10086443-C-A 10248834-C-A ***
23831325-T-G 21669439-T-G ***
13702153-G-T 11546477-G-T ***
8786764-T-C 8918723-T-C ***
22251448-G-A 20089562-G-A DYZ19 ***
13470655-GGTC-G 11314979-GGTC-G ***
13461834-C-T 11306158-C-T ***
13860704-G-T 11739998-G-T ***
22234785-T-A 20072899-T-A DYZ19 ***
22498933-C-G 20337047-C-G DYZ19 ***
22504451-G-T 20342565-G-T DYZ19 ***
22504529-G-T 20342643-G-T DYZ19 ***
10044047-A-G 10206438-A-G ***
22457081-A-T 20295195-A-T DYZ19 ***
9951983-G-A 10114374-G-A Z11543 ***
3123139-C-A 3255098-C-A ***
5966198-A-G 6098157-A-G ***
5957207-T-A 6089166-T-A ***
5864074-G-A 5996033-G-A ***
5636105-C-A 5768064-C-A ***
5495142-T-C 5627101-T-C ***
5471985-A-G 5603944-A-G ***
5426470-C-T 5558429-C-T ***
4889268-C-A 5021227-C-A ***
4269296-C-A 4401255-C-A ***
3681238-G-T 3813197-G-T ***
3329247-C-A 3461206-C-A ***
3092025-C-A 3223984-C-A ***
58988462-G-A 56842315-G-A ***
3046379-T-C 3178338-T-C ***
2865768-A-T 2997727-A-T ***
2860053-C-T 2992012-C-T ***
2852729-C-G 2984688-C-G ***
2784395-T-C 2916354-T-C ***
2768186-A-T 2900145-A-T ***
2730116-C-A 2862075-C-A ***
2684462-T-C 2816421-T-C ***
22203708-G-C 20041822-G-C Y20948 ***
10044055-A-T 10206446-A-T ***
21141050-C-T 18979164-C-T ***
23317884-A-T 21155998-A-T ***
9946031-T-C 10108422-T-C ***
6179581-C-T 6311540-C-T IR3_Dst ***
20603841-GGAGA-G 18441955-GGAGA-G P5_Dst 18×GA***
25919300-T-C 23773153-T-C P1_Y1 ***
19721754-T-C 17609874-T-C P5_Prx ***
9943831-C-A 10106222-C-A ***
26880198-CT-C 24734051-CT-C P1_r3 25×T***
25940445-C-CT 23794298-C-CT P1_Y1 17×T***
24866990-A-AT 22720843-A-AT P3_b2 11×T***
22337788-ACCTC-TCCTT 20175902-ACCTC-TCCTT DYZ19 ***
24714119-C-A 22567972-C-A P3_b2 ***
10044086-A-G 10206477-A-G ***
28315872-T-G 26169725-T-G P1_b4 ***
13470620-C-G 11314944-C-G ***
22335551-A-T 20173665-A-T DYZ19 ***
27872495-G-A 25726348-G-A P1_Y2 ***
58977556-TG-CTTTTCA 56831409-TG-CTTTTCA ***
13856966-CGAA-TGAATGGAT 11736260-CGAA-TGAATGGAT ***
13856949-GTCGA-ATCAC 11736243-GTCGA-ATCAC ***
13485714-TA-CC 11330038-TA-CC ***
26248010-C-A 24101863-C-A P1_Y1 ***
25727405-C-T 23581258-C-T P1_b3 ***
13856980-A-T 11736274-A-T ***
13326719-G-A 11171043-G-A ***
13737778-C-G 11582102-C-G ***
10012138-AAAG-GAGA 10174529-AAAG-GAGA ***
22493800-G-C 20331914-G-C DYZ19 ***
13857864-ACTAA-TTGAT 11737158-ACTAA-TTGAT ***
27916433-G-A 25770286-G-A P1_Y2 ***
18447571-A-T 16335691-A-T P6_Dst ***
25231917-A-G 23085770-A-G P2_r1 ***
9529142-CTT-C 9691533-CTT-C IR3_Prx 15×T***
26340884-A-C 24194737-A-C P1_Y1 ***
22493766-G-C 20331880-G-C DYZ19 ***
23900760-CCTC-ACTT 21738874-CCTC-ACTT ***
27077200-G-T 24931053-G-T P1_r4 ***
13461753-G-A 11306077-G-A FGC42178 ***
26912706-C-CA 24766559-C-CA P1_r3 14×A***
13740173-TGTCA-CCTCG 11584497-TGTCA-CCTCG ***
58858967-G-C 56731904-C-G ***
26981991-T-A 24835844-T-A P1_r4 ***
22503322-G-A 20341436-G-A DYZ19 ***
13488939-CTGGG-GTGGA 11333263-CTGGG-GTGGA ***
13857849-TAGAATT-CAGAATG 11737143-TAGAATT-CAGAATG ***
20716961-T-A 18555075-T-A P4_Prx ***
10061547-C-A 10223938-C-A ***
10061483-A-T 10223874-A-T ***
10044099-T-C 10206490-T-C ***
28293299-A-C 26147152-A-C P1_b4 ***
25472722-T-C 23326575-T-C P2_r2 ***
24336793-C-T 22190646-C-T P3_t1 20×T***
20654168-T-G 18492282-T-G P4_Prx ***
13433762-C-T 11278086-C-T ***
13869448-T-A 11748742-T-A ***
19682558-TGGGT-GGGGG 17570678-TGGGT-GGGGG P5_Prx ***
6138909-G-T 6270868-G-T IR3_Dst ***
6240082-C-A 6372041-C-A IR3_Dst ***
16476386-A-G 14364506-A-G ***
13733688-G-T 11578012-G-T ***
14234682-C-A 12113976-C-A ***
14233396-T-C 12112690-T-C ***
14195328-G-T 12074622-G-T ***
14149412-C-A 12028706-C-A ***
14065641-C-A 11944935-C-A ***
14050727-T-C 11930021-T-C ***
14022018-C-A 11901312-C-A ***
13865896-A-T 11745190-A-T ***
13858747-A-G 11738041-A-G ***
13858729-C-A 11738023-C-A ***
13736413-C-A 11580737-C-A ***
13617813-C-A 11462137-C-A ***
14272976-T-G 12152270-T-G ***
13476233-C-A 11320557-C-A ***
13469469-C-T 11313793-C-T ***
13468305-C-A 11312629-C-A ***
13461541-C-T 11305865-C-T ***
13441947-C-A 11286271-C-A ***
13433218-G-A 11277542-G-A ***
13394911-A-G 11239235-A-G ***
13329092-G-A 11173416-G-A ***
13317353-T-A 11161677-T-A ***
13309699-C-T 11154023-C-T ***
13287810-C-T 11132134-C-T ***
14250116-C-A 12129410-C-A ***
14273999-G-T 12153293-G-T ***
13143180-C-A 10632666-C-A ***
15774199-C-A 13662319-C-A ***
16422855-G-C 14310975-G-C ***
16413590-C-A 14301710-C-A ***
16405545-C-A 14293665-C-A ***
16302389-T-C 14190509-T-C ***
16221568-T-C 14109688-T-C ***
16118198-T-G 14006318-T-G P8_Prx ***
13253393-TCGG-CCAGTTT 11097717-TCGG-CCAGTTT ***
16056126-C-T 13944246-C-T ***
16052125-C-A 13940245-C-A ***
16037254-T-C 13925374-T-C ***
15928596-C-A 13816716-C-A ***
15762951-G-T 13651071-G-T ***
14339457-C-A 12218752-C-A ***
15762324-G-T 13650444-G-T ***
15477268-G-A 13365388-G-A ***
15450193-C-A 13338313-C-A ***
15370836-C-A 13258956-C-A ***
15215963-C-A 13104049-C-A ***
14988800-C-T 12876866-C-T ***
14847021-A-C 12735087-A-C ***
14815965-A-G 12704036-A-G ***
14774186-C-A 12662255-C-A ***
14639302-C-A 12527371-C-A ***
14396493-C-A 12275789-C-A ***
13282699-C-G 11127023-C-G ***
10088684-C-G 10251075-C-G ***
6384174-G-T 6516133-G-T ***
8074863-G-T 8206822-G-T ***
9234908-A-C 9397299-A-C ***
9233506-G-T 9395897-G-T ***
9227302-C-A 9389693-C-A ***
9147049-G-T 9309440-G-T ***
9127506-C-T 9289897-C-T 22×T***
9045078-C-A 9207469-C-A ***
9010270-G-T 9172661-G-T ***
8786749-A-C 8918708-A-C ***
8698874-G-A 8830833-G-A ***
8698720-C-A 8830679-C-A ***
8660352-C-A 8792311-C-A ***
7994314-A-G 8126273-A-G ***
9301417-C-A 9463808-C-A ***
7986030-C-T 8117989-C-T ***
7579735-G-A 7711694-G-A ***
7499786-G-T 7631745-G-T IR1_L ***
7214397-A-G 7346356-A-G ***
7092460-C-A 7224419-C-A ***
7081319-T-G 7213278-T-G ***
7021782-C-A 7153741-C-A ***
6920687-C-A 7052646-C-A ***
6770885-C-T 6902844-C-T ***
6709177-A-T 6841136-A-T ***
6534781-C-A 6666740-C-A ***
9298166-C-A 9460557-C-A ***
9307121-T-A 9469512-T-A ***
10087016-C-A 10249407-C-A ***
9929957-G-T 10092348-G-T ***
10086448-G-A 10248839-G-A ***
10086434-C-G 10248825-C-G ***
10061612-C-G 10224003-C-G ***
10050919-C-A 10213310-C-A ***
10044088-G-A 10206479-G-A ***
10044070-C-A 10206461-C-A ***
10044069-C-A 10206460-C-A ***
10010510-G-T 10172901-G-T ***
9952033-A-T 10114424-A-T ***
9951303-C-T 10113694-C-T F18054 ***
9943816-C-T 10106207-C-T ***
9725573-A-G 9887964-A-G IR3_Prx ***
9325085-A-G 9487476-A-G ***
9714764-C-T 9877155-C-T IR3_Prx ***
9674047-G-T 9836438-G-T IR3_Prx ***
9591998-C-A 9754389-C-A IR3_Prx ***
9564499-T-G 9726890-T-G IR3_Prx ***
9564495-T-G 9726886-T-G IR3_Prx ***
9564481-C-T 9726872-C-T IR3_Prx ***
9540290-G-T 9702681-G-T IR3_Prx ***
9365737-A-G 9528128-A-G ***
9365733-T-G 9528124-T-G ***
9365731-T-C 9528122-T-C ***
9365725-T-C 9528116-T-C ***
9351240-G-A 9513631-G-A ***
58989992-ATTG-TTTT 56843845-ATTG-TTTT ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

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