Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > DF21/S192 > Z30233 > FGC3903/S5201 > S5199 > Z246 > DF25 > DF5 > ZZ32 > CTS3655 > ~22290795-C-A > L627

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFGC
5359157-A-T 5491116-A-T L625 +
14115486-A-G 11994780-A-G FGC3919 YY+
9101362-G-A 9263753-G-A FGC3915 Y+
16492529-C-A 14380649-C-A L626 YY+
21456130-C-T 19294244-C-T FGC3932 YY+
13801643-C-T 11680937-C-T FGC3916 +
13941880-A-G 11821174-A-G FGC3917 Y+
14011877-G-T 11891171-G-T FGC3918 Y+
19108196-C-T 16996316-C-T FGC3931 YY+
14202036-C-T 12081330-C-T FGC3920 YY+
28579952-A-T 26433805-A-T FGC3943 +
14708498-C-T 12596564-C-T FGC3921 YY+
18408759-A-G 16296879-A-G FGC3930 P6_Gap +
17622242-G-A 15510362-G-A FGC3928 Y+
16609044-C-A 14497164-C-A FGC3927 YY+
15051218-C-T 12939309-C-T FGC3923 YY+
15750967-T-A 13639087-T-A FGC3924 YY+
16469744-T-C 14357864-T-C FGC3926 Y+
15676178-G-A 13564298-G-A FGC3901 Z10674 Y+
21762362-C-G 19600476-C-G FGC3934 YY+
8394820-T-C 8526779-T-C FGC3914 YY+
2965010-C-G 3096969-C-G FGC3904 +
7059475-C-T 7191434-C-T FGC3909 Y+
22771173-T-C 20609287-T-C FGC3936 YY+
22834676-T-A 20672790-T-A FGC3937 YY+
23342920-G-A 21181034-G-A FGC3938 YY+
23458488-G-T 21296602-G-T FGC3939 YY+
4124386-T-G 4256345-T-G FGC3907 +
3025790-C-T 3157749-C-T FGC3905 +
3775282-G-T 3907241-G-T FGC3906 +
8039775-T-C 8171734-T-C FGC3911 YY+
8067756-C-G 8199715-C-G FGC3912 YY+
8341127-A-T 8473086-A-T FGC3913 YY+
27647624-G-C 25501477-G-C FGC3942 P1_Y2 *
24932695-C-T 22786548-C-T FGC3940 g1 *
5927365-CCTGT-C 6059324-CCTGT-C *
26203308-C-T 24057161-C-T FGC3941 P1_Y1 *
7373407-C-G 7505366-C-G FGC3910 Y*
23127168-T-TA 20965282-T-TA FGC3944 *
14961679-T-C 12849754-T-C FGC3922 Y*
6328811-A-C 6460770-A-C FGC3908 IR3_Dst *
16357166-G-A 14245286-G-A FGC3925 YY*
8528913-A-G 8660872-A-G **
15011454-G-C 12899542-G-C **
9070124-C-CAAT 9232515-C-CAAT 10×AAT**
28802831-A-G 26656684-A-G **
5251981-A-T 5383940-A-T **
3238695-A-AT 3370654-A-AT 10×T**
13457157-G-GATTCC 11301481-G-GATTCC 4×ATTCC**
4681904-A-C 4813863-A-C **
5251987-C-G 5383946-C-G **
9408726-TTGAG-T 9571117-TTGAG-T **
9393291-T-TTTTG 9555682-T-TTTTG 5×TTTG**
20454052-A-G 18292166-A-G P5_Dst **
17332750-C-CAAA 15220870-C-CAAA 22×A**
20458988-A-G 18297102-A-G P5_Dst **
25804874-T-C 23658727-T-C P1_b3 **
13446112-G-A 11290436-G-A **
13809522-AGGAAT-A 11688816-AGGAAT-A 10×GGAAT**
2888870-C-CAAAAAAA 3020829-C-CAAAAAAA 32×A**
16590642-T-C 14478762-T-C **
18520629-A-G 16408749-A-G P6_Dst **
28802833-T-G 26656686-T-G **
27417792-A-C 25271645-A-C P1_g3 **
27617980-C-CAAAA 25471833-C-CAAAA P1_Y2 29×A**
28034054-A-T 25887907-A-T P1_Y2 **
59006873-T-C 56860726-T-C **
13432517-C-G 11276841-C-G **
13417550-T-C 11261874-T-C Z12234 **
16590649-T-C 14478769-T-C **
19025729-G-T 16913849-G-T **
16590724-A-G 14478844-A-G **
13500110-CAAAAAA-C 11344434-CAAAAAA-C 16×A**
16590683-A-C 14478803-A-C **
16590674-T-C 14478794-T-C **
20352297-T-TAC 18190411-T-TAC P5_Dst 12×AC**
16590681-C-A 14478801-C-A **
26376499-CA-C 24230352-CA-C P1_Y1 18×A***
58824566-T-G 56766305-A-C ***
13479314-TAC-GAT 11323638-TAC-GAT ***
22352888-ACTC-GTTT 20191002-ACTC-GTTT DYZ19 ***
27724616-A-G 25578469-A-G P1_Y2 ***
27462494-C-A 25316347-C-A P1_Y2 ***
27724611-T-C 25578464-T-C P1_Y2 ***
58824583-C-A 56766288-G-T ***
27123877-C-A 24977730-C-A P1_g3 ***
26499950-G-T 24353803-G-T P1_Y1 ***
26499948-G-T 24353801-G-T P1_Y1 ***
26499946-G-T 24353799-G-T P1_Y1 ***
22496118-T-G 20334232-T-G DYZ19 ***
58824571-T-A 56766300-A-T ***
58829060-G-C 56761811-C-G ***
58903788-G-A 56687083-C-T ***
58867522-A-G 56723349-T-C ***
58895124-T-A 56695747-A-T ***
58893246-G-A 56697625-C-T ***
58885486-C-G 56705385-G-C ***
58882545-T-G 56708326-A-C ***
58882183-C-T 56708688-G-A ***
58880041-T-G 56710830-A-C ***
58869751-G-C 56721120-C-G ***
58848531-A-T 56742340-T-A ***
9850623-GG-TA 10013014-GG-TA ***
26544618-G-GAT 24398471-G-GAT P1_g2 14×AT***
13535639-GTATATA-G 11379963-GTATATA-G 21×TA***
58913068-C-A 56677803-G-T ***
59013647-T-A 56867500-T-A ***
26352380-C-CGT 24206233-C-CGT P1_Y1 23×GT***
13481775-CT-AG 11326099-CT-AG ***
58831534-A-T 56759337-T-A ***
22481452-T-G 20319566-T-G DYZ19 ***
2758842-C-CA 2890801-C-CA 19×A***
22367094-ATGG-CTGT 20205208-ATGG-CTGT DYZ19 ***
22365980-GG-CC 20204094-GG-CC DYZ19 ***
22360294-GGC-CGA 20198408-GGC-CGA DYZ19 ***
22326778-CC-TA 20164892-CC-TA DYZ19 ***
22311258-ATTC-CTTA 20149372-ATTC-CTTA DYZ19 ***
22268478-A-ACG 20106592-A-ACG DYZ19 ***
22226524-TG-AC 20064638-TG-AC DYZ19 ***
22815505-GTT-G 20653619-GTT-G 20×T***
22048536-A-AC 19886650-A-AC ***
21148589-C-CAAAA 18986703-C-CAAAA 30×A***
20995349-CTTC-GCTT 18833463-CTTC-GCTT P4_Dst ***
20592055-AG-TA 18430169-AG-TA P5_Dst ***
20538023-A-AGT 18376137-A-AGT P5_Dst ***
20537995-AAGT-TAGC 18376109-AAGT-TAGC P5_Dst ***
20326007-C-CTTT 18164121-C-CTTT P5_Dst 29×T***
23196176-G-GTTTT 21034290-G-GTTTT 20×T***
19720709-A-AATTATT 17608829-A-AATTATT P5_Prx 23×T***
58824576-ATA-TTC 56766293-TAT-GAA ***
58866446-CCCA-TCCG 56724422-TGGG-CGGA ***
58824606-ATC-TTG 56766263-GAT-CAA ***
58824597-TCCAT-GCCAG 56766270-ATGGA-CTGGC ***
58824593-G-GATTC 56766277-G-GGAAT ***
58824589-C-CT 56766278-C-CA ***
28819269-GGTA-TGGG 26673122-GGTA-TGGG ***
28336668-C-CAAA 26190521-C-CAAA P1_b4 31×A***
28253491-C-CAAAA 26107344-C-CAAAA P1_b4 32×A***
27971726-C-CAAAAAAAA 25825579-C-CAAAAAAAA P1_Y2 27×A***
24862285-CAATAG-AAAAAA 22716138-CAATAG-AAAAAA P3_b2 ***
24447144-A-AAAGG 22300997-A-AAAGG ***
24408991-ACCC-A 22262844-ACCC-A 14×C***
19740989-TACC-AACCA 17629109-TACC-AACCA P5_Prx ***
19042179-CAAAAAA-C 16930299-CAAAAAA-C 17×A***
22767501-T-TA 20605615-T-TA 17×A***
5433981-GTGTATA-G 5565940-GTGTATA-G ***
9700780-C-CAA 9863171-C-CAA IR3_Prx 23×A***
7179734-G-GTTTTTT 7311693-G-GTTTTTT 25×T***
6605511-T-TTA 6737470-T-TTA 14×TA***
6430439-TTATATATA-T 6562398-TTATATATA-T 19×TA***
5789683-T-TA 5921642-T-TA 10×A***
5757308-CAAAAA-C 5889267-CAAAAA-C 18×A***
4909303-CC-G 5041262-CC-G ***
13267597-C-CAAAAAAAA 11111921-C-CAAAAAAAA 11×A***
3374847-C-CAAAAAA 3506806-C-CAAAAAA 23×A***
3205858-C-CAAAAAAA 3337817-C-CAAAAAAA 15×A***
22421721-G-T 20259835-G-T DYZ19 ***
2729648-C-CTTTTT 2861607-C-CTTTTT 25×T***
13470109-CAA-TCC 11314433-CAA-TCC ***
7935855-T-TA 8067814-T-TA 22×A***
13488501-AG-CA 11332825-AG-CA ***
9700802-A-AAAAAACC 9863193-A-AAAAAACC IR3_Prx ***
13433424-T-TAAA 11277748-T-TAAA 10×A***
19025741-CAAG-GAAA 16913861-CAAG-GAAA ***
15507783-G-GTTTTTT 13395903-G-GTTTTTT 25×T***
19025727-CGG-TGT 16913847-CGG-TGT ***
17841328-GACACACAC-G 15729448-GACACACAC-G 22×AC***
17669700-C-CAT 15557820-C-CAT 15×AT***
17081218-AC-TA 14969338-AC-TA ***
16905870-C-CA 14793990-C-CA 25×A***
16590758-GC-TT 14478878-GC-TT ***
16590729-CG-TA 14478849-CG-TA ***
16590681-CAA-AAC 14478801-CAA-AAC ***
15158611-G-GAA 13046697-G-GAA 15×A***
13470158-AGG-GCC 11314482-AGG-GCC ***
13921125-C-CAAAAAAAAAAA 11800419-C-CAAAAAAAAAAA 10×A***
13708376-GA-G 11552700-GA-G ***
13488961-CCA-GCC 11333285-CCA-GCC ***
13488598-ACGA-GCGC 11332922-ACGA-GCGC ***
13476758-AG-CA 11321082-AG-CA ***
13474845-CTTC-GTTA 11319169-CTTC-GTTA ***
22477897-T-A 20316011-T-A DYZ19 ***
20860504-G-C 18698618-G-C P4_Dst ***
22365744-G-T 20203858-G-T DYZ19 ***
22481114-G-A 20319228-G-A DYZ19 ***
22481641-T-A 20319755-T-A DYZ19 ***
22481754-G-T 20319868-G-T DYZ19 ***
3550568-AC-A 3682527-AC-A ***
22234368-TC-GA 20072482-TC-GA DYZ19 ***
22421286-GAAC-TTACA 20259400-GAAC-TTACA DYZ19 ***
22421293-AGAA-GGAG 20259407-AGAA-GGAG DYZ19 ***
22421312-TTAC-CAGT 20259426-TTAC-CAGT DYZ19 ***
22421360-CC-AT 20259474-CC-AT DYZ19 ***
22481673-AT-TA 20319787-AT-TA DYZ19 ***
23901429-N-C 21739543-N-C ***
28802841-T-C 26656694-T-C ***
22344721-G-A 20182835-G-A DYZ19 ***
22289469-T-C 20127583-T-C DYZ19 ***
22481103-C-G 20319217-C-G DYZ19 ***
27971754-C-A 25825607-C-A P1_Y2 ***
22503361-A-G 20341475-A-G DYZ19 ***
13435360-ATA-GTC 11279684-ATA-GTC ***
58831547-CATTT-GATGA 56759320-AAATG-TCATC ***
58831534-ATCCT-TTCAA 56759333-AGGAT-TTGAA ***
22367198-CTAATT-AGAATG 20205312-CTAATT-AGAATG DYZ19 ***
22367118-GA-AG 20205232-GA-AG DYZ19 ***
13488450-GCAG-TCAC 11332774-GCAG-TCAC ***
58858592-T-C 56732279-A-G ***
58851946-G-C 56738925-C-G ***
58831521-G-T 56759350-C-A ***
13474834-G-C 11319158-G-C ***
22236782-CGA-TGG 20074896-CGA-TGG DYZ19 ***
2860458-G-GTTTTTT 2992417-G-GTTTTTT 18×T***
22272937-TA-T 20111051-TA-T DYZ19 ***
58874684-A-C 56716187-T-G ***
22421354-T-A 20259468-T-A DYZ19 ***
13716241-T-A 11560565-T-A ***
13579573-A-G 11423897-A-G ***
13484461-T-A 11328785-T-A ***
58852082-T-C 56738789-A-G ***
58852068-C-T 56738803-G-A ***
22300886-C-A 20139000-C-A DYZ19 ***
22257091-T-G 20095205-T-G DYZ19 ***
58852098-G-A 56738773-C-T ***
22342023-T-G 20180137-T-G DYZ19 ***
13440798-A-C 11285122-A-C ***
58910382-G-T 56680489-C-A ***
24895656-G-A 22749509-G-A g1 ***
22236418-G-A 20074532-G-A DYZ19 ***
13860371-G-GATGGA 11739665-G-GATGGA 7×ATGGA***
22343082-A-T 20181196-A-T DYZ19 ***
14429405-T-TTATA 12308680-T-TTATATA 15×TA***
22342953-A-G 20181067-A-G DYZ19 ***
58867471-G-A 56723400-C-T ***
13514892-TGAG-T 11359216-TGAG-T ***
13535805-G-A 11380129-G-A ***
22263730-C-A 20101844-C-A DYZ19 ***
13470168-AG-CC 11314492-AG-CC ***
13474828-A-G 11319152-A-G ***
13199183-C-AA 11043507-C-AA ***
26325041-G-A 24178894-G-A P1_Y1 ***
19346433-CCTTT-C 17234553-CCTTT-C 15×CTTT***
25709386-G-GTTTTTT 23563239-G-GTTTTTT P1_b3 31×T***
58829066-TTCCC-GTCCA 56761801-GGGAA-TGGAC ***
26152094-TCTC-CCTT 24005947-TCTC-CCTT P1_Y1 ***
28237969-T-C 26091822-T-C P1_b4 ***
22367160-G-T 20205274-G-T DYZ19 ***
22342963-A-G 20181077-A-G DYZ19 ***
14491216-T-A 12370485-A-. ***
24895651-G-A 22749504-G-A g1 ***
58831558-ATTCC-TTTCG 56759309-GGAAT-CGAAA ***
22300905-C-A 20139019-C-A DYZ19 ***
22365599-G-T 20203713-G-T DYZ19 ***
22250569-T-A 20088683-T-A DYZ19 ***
20243335-A-T 18081449-A-T P5_Dst ***
20537954-G-C 18376068-G-C P5_Dst ***
20537970-G-C 18376084-G-C P5_Dst ***
20537986-C-A 18376100-C-A P5_Dst ***
20538015-C-T 18376129-C-T P5_Dst ***
20538027-C-T 18376141-C-T P5_Dst ***
20538032-C-A 18376146-C-A P5_Dst ***
13449696-CTCCAT-C 11294020-CTCCAT-C 11×TCCAT***
20995349-C-G 18833463-C-G P4_Dst ***
22198235-G-T 20036349-G-T ***
22226543-C-T 20064657-C-T ZS4894 DYZ19 ***
22234939-C-A 20073053-C-A DYZ19 ***
22248698-A-C 20086812-A-C DYZ19 ***
22248798-G-C 20086912-G-C DYZ19 ***
22293088-T-G 20131202-T-G DYZ19 ***
17523590-A-T 15411710-A-T ***
22354714-G-C 20192828-G-C DYZ19 ***
22364887-G-T 20203001-G-T DYZ19 ***
22364443-C-A 20202557-C-A DYZ19 ***
22354997-G-C 20193111-G-C DYZ19 ***
22354981-G-A 20193095-G-A DYZ19 ***
22354963-G-C 20193077-G-C DYZ19 ***
22354720-G-T 20192834-G-T DYZ19 ***
22354660-T-A 20192774-T-A DYZ19 ***
22311211-G-T 20149325-G-T DYZ19 ***
22348182-C-A 20186296-C-A DYZ19 ***
22343981-T-C 20182095-T-C DYZ19 ***
22342390-G-C 20180504-G-C DYZ19 ***
22335798-C-T 20173912-C-T DYZ19 ***
22332548-A-T 20170662-A-T DYZ19 ***
22332421-A-C 20170535-A-C DYZ19 ***
19071654-T-C 16959774-T-C ***
16785196-T-C 14673316-T-C ***
58831529-T-A 56759342-A-T ***
13481732-G-C 11326056-G-C ***
58847716-G-A 56743155-C-T ***
13481723-A-C 11326047-A-C ***
22344649-A-C 20182763-A-C DYZ19 ***
4909395-T-C 5041354-T-C ***
13481756-C-T 11326080-C-T ***
22354975-T-A 20193089-T-A DYZ19 ***
13703199-C-T 11547523-C-T ***
13481755-C-G 11326079-C-G ***
8660569-G-A 8792528-G-A ***
8964954-N-T 9096913-N-T ***
8964955-N-G 9096914-N-G ***
13385103-C-T 11229427-C-T ***
58831512-CATT-TATG 56759356-AATG-CATA ***
22297151-TTC-GGA 20135265-TTC-GGA DYZ19 ***
27398709-C-T 25252562-C-T FGC28799 P1_g3 ***
13481812-A-G 11326136-A-G ***
16590759-C-T 14478879-C-T ***
13481685-A-T 11326009-A-T ***
16590758-G-T 14478878-G-T ***
16590730-G-A 14478850-G-A ***
16590729-C-T 14478849-C-T ***
16351267-G-T 14239387-G-T ***
13708398-A-C 11552722-A-C ***
13548993-A-G 11393317-A-G ***
13470297-T-G 11314621-T-G ***
4909418-C-T 5041377-C-T ***
13256206-G-A 11100530-G-A FGC29766 ***
13129621-G-A 10619107-G-A ***
9310929-G-T 9473320-G-T ***
8826708-C-A 8958667-C-A ***
6638707-C-G 6770666-C-G ***
4909447-A-G 5041406-A-G ***
58893225-CATTCC-TCCTCA 56697641-GGAATG-TGAGGA ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

Kit: SAXZC*16000000100000008300000
Used in age calculations16000000100000008300000
Counts of SNPs2720
Variant counts last updated 2017-11-26 13:53:41.

* BED data not available. Using default values.

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