Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > FGC11134 > A353 > Z16250 > A114 > CTS4466/S1136 > S1115 > A541 > A151 > FGC29772 > FGC29779 > BY15520

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
446648
BigY2
446648
13695076-C-T 11539400-C-T A*
25964744-C-T 23818597-C-T P1_Y1 A*
26012907-G-GA 23866760-G-GA P1_Y1 9×AA*
7881551-G-C 8013510-G-C Y62753 YY++
15996115-G-A 13884235-G-A FGC34068 YY++
8808677-GT-G 8940636-GT-G 12×T*
19108769-AT-A 16996889-AT-A 10×T****
13453175-A-T 11297499-A-T *
13453198-C-T 11297522-C-T *
14031748-TTC-T,TTCTTTCTTTCTTTC 11911042-TTC-T,TTCTTTCTTTCTTTC *
11662943-G-GA **
11656434-T-G **
11646249-A-G **
13708948-G-T 11553272-G-T **
13708942-ATT-A 11553266-ATT-A **
11656901-CGG-C **
11662925-C-G **
13708941-A-G 11553265-A-G **
11662939-AC-A **
7242628-G-A 7374587-G-A **
13803480-C-T 11682774-C-T **
11662948-T-G **
11672442-A-C **
13857307-G-A 11736601-G-A **
13863687-T-A 11742981-T-A **
13880669-A-G 11759963-A-G **
13902815-C-A 11782109-C-A **
13985122-C-A 11864416-C-A **
14036341-T-A 11915635-T-A **
14036342-C-T 11915636-C-T **
14041273-A-ATC 11920567-A-ATC **
14052772-T-C 11932066-T-C **
14052773-G-A 11932067-G-A **
14061406-C-T 11940700-C-T **
13708939-A-C 11553263-A-C **
13593994-C-A 11438318-C-A **
13708932-ATG-A 11553256-ATG-A **
11014158-T-C **
10915033-T-A **
10925548-G-A **
10942978-G-T **
10953504-C-T **
10953509-C-T **
10956633-C-G **
10969957-T-TCGGTTTGAAG **
11001493-T-C **
11001499-G-T **
11003677-C-T **
11004141-A-G **
11005408-C-A **
11007061-C-CT **
11027628-T-A **
13654440-A-T 11498764-A-T **
11027663-C-A **
13202420-A-T 11046744-A-T **
13208706-C-A 11053030-C-A **
13250033-C-T 11094357-C-T **
13255721-C-A 11100045-C-A **
13255965-A-G 11100289-A-G **
13291315-C-A 11135639-C-A **
13328533-C-A 11172857-C-A **
13445093-C-A 11289417-C-A **
13447308-A-G 11291632-A-G **
13468206-A-T 11312530-A-T **
13468233-T-A 11312557-T-A **
14074473-G-A 11953767-G-A **
14073222-A-G 11952516-A-G **
14348206-A-G 12227501-A-G **
14087212-T-C 11966506-T-C **
15191092-T-G 13079178-T-G **
14982113-C-A 12870181-C-A **
15060389-C-A 12948481-C-A **
15087383-A-G 12975473-A-G **
15127770-T-C 13015857-T-C **
15127773-G-A 13015860-G-A **
15127774-G-C 13015861-G-C **
15127775-G-T 13015862-G-T **
15127790-T-C 13015877-T-C **
15143721-G-T 13031808-G-T **
15190202-T-C 13078288-T-C **
15190212-A-T 13078298-A-T **
15190218-A-G 13078304-A-G **
15193811-C-T 13081897-C-T **
14937989-G-T 12826064-G-T **
15219152-T-A 13107238-T-A **
15239492-C-A 13127578-C-A **
15250681-A-G 13138767-A-G **
15250684-T-G 13138770-T-G **
15352854-A-T 13240973-A-T **
15363844-A-C 13251964-A-C **
15363846-G-A 13251966-G-A **
15379795-T-C 13267915-T-C **
15394448-C-T 13282568-C-T **
15427322-T-C 13315442-T-C **
15429063-C-A 13317183-C-A **
15439882-C-A 13328002-C-A **
15469282-AT-A 13357402-AT-A **
14967326-A-G 12855401-A-G **
14912924-C-A 12800991-C-A **
14177774-C-A 12057068-C-A **
14513062-C-A 12401267-C-A **
14190263-C-A 12069557-C-A **
10901292-A-C **
14348207-C-A 12227502-C-A **
14357359-C-T 12236654-C-T **
14402390-G-A 12281687-G-A **
14431714-C-A 12310987-C-A **
14440052-T-C 12319325-T-C **
14465302-A-G 12344575-A-G **
14475801-C-A 12355070-C-A **
14480190-C-A 12359459-C-A **
14490315-C-T 12369584-C-T **
14504671-T-C 12392876-T-C **
14511437-C-T 12399642-C-T **
14581190-C-T 12469390-C-T FGC22474 **
14895162-C-A 12783228-C-A **
14627169-C-T 12515237-C-T **
14660356-C-T 12548421-C-T **
14667893-C-T 12555959-C-T **
14741996-T-C 12630064-T-C **
14765328-C-T 12653397-C-T **
14771707-C-A 12659776-C-A **
14776050-T-A 12664119-T-A **
14785076-G-A 12673146-G-A **
14807403-G-C 12695474-G-C **
14836271-G-T 12724338-G-T **
14894015-T-G 12782081-T-G **
14894023-GTACC-G 12782089-GTACC-G **
14894028-C-CGAGA 12782094-C-CGAGA **
10915030-A-G **
10839048-TC-T **
10901272-T-C **
7503877-C-A 7635836-C-A IR1_L **
7275735-A-T 7407694-A-T **
7316577-A-T 7448536-A-T **
7316585-G-T 7448544-G-T **
7316592-C-T 7448551-C-T **
7316602-A-ACT 7448561-A-ACT **
7316624-A-G 7448583-A-G **
7331117-C-A 7463076-C-A **
7335477-C-T 7467436-C-T **
7361295-C-A 7493254-C-A **
7413042-C-G 7545001-C-G **
7414042-G-A 7546001-G-A **
7470093-C-A 7602052-C-A IR1_L **
7542419-A-G 7674378-A-G **
7242644-G-A 7374603-G-A **
7542425-A-G 7674384-A-G **
7567957-C-T 7699916-C-T **
7774742-G-T 7906701-G-T **
8045236-A-T 8177195-A-T **
8078747-G-T 8210706-G-T **
8164955-A-G 8296914-A-G **
8237507-A-C 8369466-A-C **
8345871-T-C 8477830-T-C **
8345878-C-G 8477837-C-G **
8654041-C-A 8786000-C-A **
8663595-C-A 8795554-C-A **
8709938-A-G 8841897-A-G **
8746894-A-G 8878853-A-G **
7275341-G-T 7407300-G-T **
7242627-G-T 7374586-G-T **
8746896-A-G 8878855-A-G **
6917082-CCA-C 7049041-CCA-C **
6875650-C-A 7007609-C-A **
6881664-C-A 7013623-C-A **
6882256-C-A 7014215-C-A **
6900901-C-A 7032860-C-A Y82823 **
6912800-C-A 7044759-C-A **
6917024-T-C 7048983-T-C **
6917028-T-C 7048987-T-C **
6917029-C-T 7048988-C-T **
6917035-T-A 7048994-T-A **
6917061-T-A 7049020-T-A **
6917064-C-A 7049023-C-A **
6917071-G-T 7049030-G-T **
6931530-C-A 7063489-C-A **
7242619-C-G 7374578-C-G **
7019104-GTT-G 7151063-GTT-G **
7019108-A-AAG 7151067-A-AAG **
7088408-C-A 7220367-C-A **
7096660-C-A 7228619-C-A **
7097205-G-T 7229164-G-T **
7104073-T-G 7236032-T-G **
7113036-A-G 7244995-A-G **
7115651-C-A 7247610-C-A **
7159091-A-G 7291050-A-G **
7172328-G-T 7304287-G-T **
7222318-C-A 7354277-C-A **
7231615-C-A 7363574-C-A **
7242612-G-A 7374571-G-A **
8746895-C-T 8878854-C-T **
8749104-C-T 8881063-C-T **
10901256-TTTCCG-T **
10081999-C-G 10244390-C-G **
9926965-G-A 10089356-G-A **
9952844-C-T 10115235-C-T **
10003730-TG-T 10166121-TG-T **
10016880-C-A 10179271-C-A **
10081889-T-G 10244280-T-G **
10081894-A-T 10244285-A-T **
10081906-C-G 10244297-C-G **
10081911-A-G 10244302-A-G **
10081913-G-A 10244304-G-A **
10081934-T-G 10244325-T-G **
10081943-T-C 10244334-T-C **
10081962-C-A 10244353-C-A **
10082009-A-G 10244400-A-G **
9840867-C-A 10003258-C-A **
10621818-G-T **
10627687-C-CA **
10627699-T-C **
10627711-CCACAG-C **
10630697-T-C **
10660234-A-C **
10662922-A-AT **
10662939-C-G **
10683362-A-T **
10683387-C-T **
10750040-C-A **
15541580-G-T 13429700-G-T **
10892534-A-T **
9874300-G-T 10036691-G-T **
9750126-G-GA 9912517-G-GA **
8749121-T-C 8881080-T-C **
9048121-ACCTG-A 9210512-ACCTG-A **
8762123-C-A 8894082-C-A **
8772780-C-T 8904739-C-T **
8806204-A-G 8938163-A-G **
8810278-C-A 8942237-C-A **
8848061-CT-C 8980020-CT-C **
8851072-AAC-A 8983031-AAC-A **
8902018-T-G 9033977-T-G **
8914276-G-A 9046235-G-A **
9012982-C-A 9175373-C-A **
9012994-C-T 9175385-C-T **
9048106-T-G 9210497-T-G **
9048116-A-T 9210507-A-T **
9048119-G-GTGTA 9210510-G-GTGTA **
9048155-G-T 9210546-G-T **
9746393-C-T 9908784-C-T **
9088966-G-A 9251357-G-A **
9088979-T-A 9251370-T-A **
9088989-A-T 9251380-A-T **
9088993-T-G 9251384-T-G **
9088999-C-T 9251390-C-T **
9089000-T-G 9251391-T-G **
9089007-T-G 9251398-T-G **
9089009-A-G 9251400-A-G **
9221710-T-C 9384101-T-C **
9524032-TA-T 9686423-TA-T **
9725184-A-C 9887575-A-C IR3_Prx **
9732818-C-T 9895209-C-T IR3_Prx **
9738524-G-T 9900915-G-T IR3_Prx **
15469289-T-C 13357409-T-C **
15631439-G-T 13519559-G-T **
15542123-A-G 13430243-A-G **
22176864-G-T 20014978-G-T **
21949268-G-T 19787382-G-T **
21952008-T-A 19790122-T-A **
21994465-C-A 19832579-C-A **
22022627-T-A 19860741-T-A **
22044044-T-C 19882158-T-C **
22055355-C-A 19893469-C-A **
22055367-G-A 19893481-G-A **
22055374-A-C 19893488-A-C **
22055376-T-C 19893490-T-C **
22055377-G-C 19893491-G-C **
22055383-T-C 19893497-T-C **
22088759-C-G 19926873-C-G **
22181796-C-A 20019910-C-A **
21949179-A-T 19787293-A-T **
22214629-T-C 20052743-T-C **
22214631-A-G 20052745-A-G **
22214637-C-T 20052751-C-T **
22222859-A-T 20060973-A-T DYZ19 **
22298425-C-A 20136539-C-A DYZ19 **
22321507-G-C 20159621-G-C DYZ19 **
22505721-C-A 20343835-C-A DYZ19 **
22630571-C-A 20468685-C-A **
22639293-G-A 20477407-G-A **
22645003-A-G 20483117-A-G **
22645009-A-G 20483123-A-G **
22776862-A-GG 20614976-A-GG **
22793173-GA-G 20631287-GA-G **
21949184-T-G 19787298-T-G **
21874760-C-A 19712874-C-A **
22872459-C-A 20710573-C-A **
21206777-C-A 19044891-C-A **
20065114-A-T 17953234-A-T P5_Gap **
21029321-C-T 18867435-C-T P4_Dst **
21072256-C-A 18910370-C-A **
21081933-T-G 18920047-T-G **
21106822-C-A 18944936-C-A **
21148588-TC-T 18986702-TC-T **
21148863-CTAA-C 18986977-CTAA-C **
21148875-G-A 18986989-G-A **
21148880-T-G 18986994-T-G **
21148891-T-C 18987005-T-C **
21148905-G-A 18987019-G-A **
21148908-G-A 18987022-G-A **
21219735-AT-A 19057849-AT-A **
21868392-T-G 19706506-T-G **
21225159-C-G 19063273-C-G **
21244755-C-A 19082869-C-A **
21256031-T-C 19094145-T-C **
21259459-C-A 19097573-C-A **
21325197-C-T 19163311-C-T **
21360388-C-A 19198502-C-A **
21392256-G-T 19230370-G-T **
21456197-G-A 19294311-G-A Y138540 **
21658477-C-A 19496591-C-A **
21768817-C-A 19606931-C-A **
21824950-C-A 19663064-C-A **
21852729-C-A 19690843-C-A **
21862291-C-A 19700405-C-A **
22825056-A-G 20663170-A-G **
22873989-C-A 20712103-C-A **
19799846-C-A 17687966-C-A P5_Prx **
28006671-G-T 25860524-G-T P1_Y2 **
23775550-A-G 21613664-A-G **
24298895-A-T 22152748-A-T P3_t1 **
24300816-T-TC 22154669-T-TC P3_t1 **
24360576-T-C 22214429-T-C **
24468929-C-T 22322782-C-T **
24600670-CAAAAA-C 22454523-CAAAAA-C P3_t2 16×A**
25857506-A-G 23711359-A-G P1_Y1 **
25971498-C-A 23825351-C-A P1_Y1 **
26248255-G-T 24102108-G-T P1_Y1 **
26415862-C-A 24269715-C-A P1_Y1 **
26834425-C-A 24688278-C-A P1_g2 **
27996129-A-AG 25849982-A-AG P1_Y2 **
28006749-T-C 25860602-T-C P1_Y2 **
23768555-C-A 21606669-C-A **
28461959-G-A 26315812-G-A **
28547558-C-A 26401411-C-A **
28608551-C-A 26462404-C-A **
28620732-C-A 26474585-C-A **
28650002-C-A 26503855-C-A **
28659095-C-G 26512948-C-G **
28686932-T-C 26540785-T-C **
28719778-C-A 26573631-C-A **
28739478-C-A 26593331-C-A **
28760844-G-T 26614697-G-T **
28781965-A-G 26635818-A-G **
56837389-G-C **
56852578-C-T **
23775549-C-T 21613663-C-T **
23745105-G-T 21583219-G-T **
22950309-G-A 20788423-G-A **
23381918-G-A 21220032-G-A **
23033608-G-A 20871722-G-A **
23034491-C-T 20872605-C-T **
23059606-AC-A 20897720-AC-A **
23059609-C-CT 20897723-C-CT **
23091461-C-A 20929575-C-A **
23137065-C-A 20975179-C-A **
23273471-C-A 21111585-C-A **
23381884-A-G 21219998-A-G **
23381890-G-C 21220004-G-C **
23381891-G-A 21220005-G-A **
23381893-A-T 21220007-A-T **
23381901-A-G 21220015-A-G **
23381912-T-G 21220026-T-G **
23411382-T-C 21249496-T-C **
23741991-G-T 21580105-G-T **
23411386-T-C 21249500-T-C **
23411387-G-A 21249501-G-A **
23411392-AG-A 21249506-AG-A **
23411408-G-A 21249522-G-A **
23411416-G-A 21249530-G-A **
23411950-C-A 21250064-C-A **
23438782-C-A 21276896-C-A **
23468615-C-CAA 21306729-C-CAA **
23468624-C-T 21306738-C-T **
23468627-A-G 21306741-A-G **
23468641-A-G 21306755-A-G **
23531706-C-A 21369820-C-A **
23734329-A-T 21572443-A-T **
19842179-TAAATAAATAAATA-T 17730299-TAAATAAATAAATA-T P5_Prx **
19733306-C-CT 17621426-C-CT P5_Prx **
15555982-C-A 13444102-C-A **
16938138-A-G 14826258-A-G **
16440902-C-A 14329022-C-A **
16463389-G-A 14351509-G-A **
16497956-TAA-T 14386076-TAA-T **
16522503-G-T 14410623-G-T **
16554710-C-A 14442830-C-A **
16581802-C-A 14469922-C-A **
16607772-G-T 14495892-G-T **
16688463-C-A 14576583-C-A **
16704680-G-T 14592800-G-T **
16707309-C-A 14595429-C-A **
16840431-T-C 14728551-T-C **
16874749-T-A 14762869-T-A **
16954370-A-C 14842490-A-C **
16437387-C-G 14325507-C-G **
16987352-C-A 14875472-C-A **
17014665-A-G 14902785-A-G **
17056751-A-T 14944871-A-T **
17182655-A-G 15070775-A-G **
17214888-G-T 15103008-G-T **
17228692-A-T 15116812-A-T **
17242978-TACACACAC-T 15131098-TACACACAC-T 18×AC**
17264940-T-C 15153060-T-C **
17264961-T-C 15153081-T-C **
17330769-C-G 15218889-C-G **
17347506-T-C 15235626-T-C **
17347507-A-G 15235627-A-G **
17347509-A-G 15235629-A-G **
16437388-A-G 14325508-A-G **
16437379-T-C 14325499-T-C **
17376557-C-A 15264677-C-A **
16058837-C-A 13946957-C-A **
15579535-G-A 13467655-G-A **
15600030-T-C 13488150-T-C **
6869542-C-G 7001501-C-G **
15841947-A-G 13730067-A-G **
15860308-C-A 13748428-C-A **
15903421-C-A 13791541-C-A **
15904958-G-T 13793078-G-T **
15964656-T-TC 13852776-T-TC **
15964663-A-G 13852783-A-G **
15968246-C-A 13856366-C-A **
56858183-G-A **
16020763-T-C 13908883-T-C **
16078474-T-C 13966594-T-C **
16437377-T-A 14325497-T-A **
16175217-G-T 14063337-G-T **
16179232-C-A 14067352-C-A **
16184427-C-T 14072547-C-T **
16184442-A-G 14072562-A-G **
16196298-A-T 14084418-A-T **
16228064-G-A 14116184-G-A **
16277304-T-C 14165424-T-C **
16297678-C-A 14185798-C-A **
16357058-A-T 14245178-A-T **
16366253-C-A 14254373-C-A **
16392285-C-A 14280405-C-A **
16437360-GA-G 14325480-GA-G **
16437374-A-G 14325494-A-G **
17360589-C-A 15248709-C-A **
17403854-T-G 15291974-T-G **
19544433-C-A 17432553-C-A **
19217190-C-A 17105310-C-A **
18892404-T-C 16780524-T-C **
18901057-C-A 16789177-C-A **
18915389-C-A 16803509-C-A **
18925438-C-G 16813558-C-G **
18952265-C-A 16840385-C-A **
18985959-T-C 16874079-T-C **
19043067-G-C 16931187-G-C **
19043076-A-T 16931196-A-T **
19043920-C-A 16932040-C-A **
19045063-C-A 16933183-C-A **
19109933-T-C 16998053-T-C **
19161044-G-T 17049164-G-T **
19228755-A-G 17116875-A-G **
18755919-C-A 16644039-C-A **
19231486-C-A 17119606-C-A **
19266691-A-G 17154811-A-G **
19356527-C-T 17244647-C-T **
19398187-C-A 17286307-C-A **
19410220-TC-T 17298340-TC-T **
19412461-A-T 17300581-A-T **
19412965-C-A 17301085-C-A **
19461850-G-T 17349970-G-T **
19472541-TT-G 17360661-TT-G **
19472554-T-C 17360674-T-C **
19472557-T-C 17360677-T-C **
19472560-T-G 17360680-T-G **
19472561-T-C 17360681-T-C **
18763629-A-G 16651749-A-G **
18723888-T-TC 16612008-T-TC **
17412169-G-T 15300289-G-T **
17803126-C-A 15691246-C-A **
17437059-C-A 15325179-C-A **
17438634-C-A 15326754-C-A **
17456034-C-A 15344154-C-A **
17535733-T-C 15423853-T-C **
17555744-C-A 15443864-C-A **
17576189-C-T 15464309-C-T Y131517 **
17591794-C-A 15479914-C-A **
17623290-C-A 15511410-C-A **
17644493-C-T 15532613-C-T **
17683898-C-CA 15572018-C-CA 9×A**
17723465-C-A 15611585-C-A Y72223 **
17763164-T-A 15651284-T-A **
17792270-C-T 15680390-C-T **
17894433-T-C 15782553-T-C **
18710139-C-A 16598259-C-A **
18058972-C-A 15947092-C-A **
18072038-G-T 15960158-G-T **
18097873-A-T 15985993-A-T **
18097876-A-G 15985996-A-G **
18108457-C-CTT 15996577-C-CTT 13×T**
18146969-CT-C 16035089-CT-C **
18159402-C-A 16047522-C-A **
18248283-G-T 16136403-G-T **
18398142-T-C 16286262-T-C P6_Gap **
18401171-C-A 16289291-C-A P6_Gap **
18520431-G-T 16408551-G-T P6_Dst **
18574929-C-T 16463049-C-T **
18707358-C-A 16595478-C-A **
6869544-C-A 7001503-C-A **
15996379-C-A 13884499-C-A **
6856853-C-A 6988812-C-A **
13463905-C-T 11308229-C-T **
11011482-C-G **
19369349-G-A 17257469-G-A **
10934785-A-T **
10934798-G-C **
10934848-C-T **
5412005-C-A 5543964-C-A **
11003737-C-T **
6778955-C-A 6910914-C-A **
56837366-G-T **
10691042-C-T **
13463924-T-C 11308248-T-C **
13463917-G-C 11308241-G-C **
56858098-C-T **
56837368-T-A **
6835669-G-A 6967628-G-A **
14052795-G-A 11932089-G-A **
13471960-C-G 11316284-C-G **
4244586-C-A 4376545-C-A **
16531-A-C **
8040162-C-A 8172121-C-A **
13448909-C-A 11293233-C-A **
8078450-G-T 8210409-G-T **
10689135-C-G **
10004534-C-A 10166925-C-A **
10669507-T-A **
14880241-ATTT-A 12768311-ATTT-A 17×T**
10847534-C-A **
28787313-G-GAAAT 26641166-G-GAAAT **
28787316-A-AG 26641169-A-AG **
20497572-CTTTT-C 18335686-CTTTT-C P5_Dst 30×T**
14450501-C-A 12329774-C-A **
10845736-T-G **
10912273-T-G **
10689120-C-T **
10689125-C-T **
11003735-C-T **
19054358-TG-T 16942478-TG-T **
16516062-T-C 14404182-T-C Y96554 **
28562246-C-A 26416099-C-A **
6933402-G-A 7065361-G-A **
6933408-C-T 7065367-C-T **
8705950-T-A 8837909-T-A **
13705519-T-A 11549843-T-A **
11003706-T-G **
10987199-T-A **
18226094-C-A 16114214-C-A **
13194791-A-T 11039115-A-T **
10988535-C-T **
10835516-C-T **
14552415-G-A 12440616-G-A **
9962147-T-A 10124538-T-A **
15497972-A-AT 13386092-A-AT 26×T**
16516097-T-C 14404217-T-C **
7095064-C-A 7227023-C-A **
7896612-C-A 8028571-C-A **
18890882-ATTTT-A 16779002-ATTTT-A 17×T**
13611197-G-A 11455521-G-A **
8138215-A-T 8270174-A-T **
7294736-CAT-C 7426695-CAT-C **
19161038-C-A 17049158-C-A **
19125693-TCAA-T 17013813-TCAA-T **
16516036-GT-G 14404156-GT-G **
16516044-T-TTACA 14404164-T-TTACA **
19472575-C-A 17360695-C-A **
10664769-C-G **
25524728-A-T 23378581-A-T P1_gr1 **
15116406-G-T 13004493-G-T **
15264744-A-G 13152833-A-G **
13493262-C-A 11337586-C-A **
11030192-C-A **
13364146-CAAAA-C 11208470-CAAAA-C 26×A**
19720737-C-G 17608857-C-G P5_Prx **
10986847-C-G **
13471988-G-T 11316312-G-T **
17500674-G-T 15388794-G-T **
16548-T-C **
10953499-C-T **
10664756-A-T **
10986838-G-T **
10764638-T-A **
6917072-C-A 7049031-C-A **
5191228-CTTTTTT-C 5323187-CTTTTTT-C 27×T**
22774869-CTTTT-C 20612983-CTTTT-C 21×T**
22447703-C-A 20285817-C-A DYZ19 **
11657883-G-A **
7270304-G-A 7402263-G-A **
13462117-A-G 11306441-A-G **
16516028-T-C 14404148-T-C **
16516129-G-C 14404249-G-C **
2856414-C-A 2988373-C-A **
13433339-A-T 11277663-A-T **
13643845-C-A 11488169-C-A **
21133555-TC-T 18971669-TC-T **
15190203-G-A 13078289-G-A **
23588752-G-T 21426866-G-T **
9076695-C-A 9239086-C-A **
10683382-G-T **
8044695-C-T 8176654-C-T **
4521322-TAA-T 4653281-TAA-T 15×A**
22703580-T-G 20541694-T-G **
22055360-A-G 19893474-A-G **
10825294-C-CGGGTT **
23141062-C-A 20979176-C-A **
8811220-C-A 8943179-C-A **
24671171-T-C 22525024-T-C P3_b2 **
7567962-G-A 7699921-G-A **
17604931-G-GTT 15493051-G-GTT 24×T**
59033190-C-T 56887043-C-T **
5784590-GA-G 5916549-GA-G 13×A**
5502369-G-T 5634328-G-T **
9944564-A-T 10106955-A-T **
9944573-G-A 10106964-G-A **
9944582-C-T 10106973-C-T **
13267030-A-G 11111354-A-G **
13267036-T-A 11111360-T-A **
13267039-A-G 11111363-A-G **
13611177-C-T 11455501-C-T **
19153992-GTA-G 17042112-GTA-G **
13448910-A-ACTCCC 11293234-A-ACTCCC **
21148910-C-T 18987024-C-T **
23825775-T-A 21663889-T-A **
58969992-A-G 56823845-A-G **
59025760-G-T 56879613-G-T **
9040923-A-T 9203314-A-T **
13487771-G-T 11332095-G-T **
10081968-C-G 10244359-C-G **
13611203-G-A 11455527-G-A **
5862296-C-CA 5994255-C-CA 8×A**
21575486-A-G 19413600-A-G **
13141222-C-G 10630708-C-G **
14409002-TC-T 12288300-TC-T **
8762192-G-C 8894151-G-C **
5110127-T-TA 5242086-T-TA 12×A**
7137214-T-C 7269173-T-C FGC6590 Z2141 9×AC**
8261193-AAT-A 8393152-AAT-A **
10094472-AC-A 10256863-AC-A **
58848262-C-T 56742609-G-A **
27484258-A-ATCTT 25338111-A-ATCTT P1_Y2 19×TCTT**
17599102-T-C 15487222-T-C V167 **
10043882-T-C 10206273-T-C FGC65838 **
16291872-C-A 14179992-C-A PF7007 ****
9962138-C-G 10124529-C-G **
15995099-C-A 13883219-C-A **
58848265-T-C 56742606-A-G **
13447284-C-T 11291608-C-T **
8387571-AAGAAGGAGAAGG-A 8519530-AAGAAGGAGAAGG-A 10×AGAAGG**
14042842-A-G 11922136-A-G CTS1739 Z2748 ****
9962152-T-C 10124543-T-C **
19472571-C-T 17360691-C-T Z29491CTS10470 ****
21575539-G-A 19413653-G-A **
9040925-A-T 9203316-A-T 17×AT**
13484074-A-C 11328398-A-C **
13484100-T-A 11328424-T-A **
13447896-CGTTCA-C 11292220-CGTTCA-C **
59010149-G-T 56864002-G-T **
5593309-CA-C 5725268-CA-C 15×A**
2747768-CAT-C 2879727-CAT-C **
2707072-C-A 2839031-C-A **
59016101-GC-G 56869954-GC-G **
10798669-A-TC **
15939192-C-A 13827312-C-A **
56869966-C-CTTG **
56869968-GTT-G **
9221711-ATATACC-A 9384102-ATATACC-A **
16516137-C-T 14404257-C-T **
13705511-G-C 11549835-G-C **
56876445-GAA-G **
13705488-A-T 11549812-A-T **
27844539-ATTTT-A 25698392-ATTTT-A P1_Y2 27×T**
6699137-T-G 6831096-T-G **
20478249-T-TG 18316363-T-TG P5_Dst **
56832029-ATTCCATTCCG-A **
56869959-T-TAA **
27808453-CTT-C 25662306-CTT-C P1_Y2 15×T**
11001532-AC-A **
23034501-G-A 20872615-G-A **
13484038-G-T 11328362-G-T **
10754708-C-T **
11027660-A-C **
2729648-CTTTTT-C 2861607-CTTTTT-C 25×T**
10630675-A-G **
13226737-A-G 11071061-A-G **
17685759-C-A 15573879-C-A **
10934854-A-T **
56869961-TCAA-T **
10984541-A-T **
59016121-A-AG 56869974-A-AG **
18270249-CA-C 16158369-CA-C 35×A**
4936053-C-CA 5068012-C-CA 26×A**
17056747-T-C 14944867-T-C Z45332 **
8085708-G-A 8217667-G-A **
28545016-C-CA 26398869-C-CA 22×A**
6493948-T-C 6625907-T-C **
18891184-CT-C 16779304-CT-C 13×T**
9962239-T-C 10124630-T-C **
10094504-A-AC 10256895-A-AC **
16437373-T-C 14325493-T-C PR2178 ****
23876114-G-T 21714228-G-T ****
10081895-G-T 10244286-G-T **
10984519-T-G **
10081903-G-T 10244294-G-T **
13488870-C-A 11333194-C-A **
13486509-C-T 11330833-C-T **
28609552-C-CT 26463405-C-CT 17×T**
13611172-T-C 11455496-T-C **
13940857-AAGAGAGAG-A 11820151-AAGAGAGAG-A 18×AG**
10081980-C-T 10244371-C-T **
15435213-C-T 13323333-C-T **
3922183-GA-G 4054142-GA-G 16×A**
19271549-TAA-T 17159669-TAA-T 14×A**
10935520-T-G **
4922309-C-CT 5054268-C-CT 14×T**
9962151-T-C 10124542-T-C **
19043082-C-A 16931202-C-A **
4557192-C-A 4689151-C-A **
4111857-C-T 4243816-C-T **
4200964-C-T 4332923-C-T **
4230004-C-A 4361963-C-A **
4239061-G-T 4371020-G-T **
4346565-A-T 4478524-A-T 22×T**
4449437-A-G 4581396-A-G **
4473435-G-T 4605394-G-T **
4476667-A-G 4608626-A-G **
4528204-G-T 4660163-G-T **
11027643-C-T **
4023208-C-T 4155167-C-T **
4789117-T-C 4921076-T-C **
4804438-G-T 4936397-G-T **
4815953-G-T 4947912-G-T **
4834988-C-A 4966947-C-A **
4950985-C-A 5082944-C-A **
4953184-C-A 5085143-C-A **
4995451-T-A 5127410-T-A **
5006061-T-A 5138020-T-A **
5073090-G-T 5205049-G-T **
5083142-A-G 5215101-A-G **
4077197-G-T 4209156-G-T **
3929852-C-A 4061811-C-A **
5093938-G-T 5225897-G-T **
2950017-A-T 3081976-A-T **
2701279-G-T 2833238-G-T **
2701286-C-T 2833245-C-T **
2701299-G-C 2833258-G-C **
2701316-T-A 2833275-T-A **
2701319-G-C 2833278-G-C **
2701319-G-GA 2833278-G-GA **
2729624-T-C 2861583-T-C **
2783554-G-T 2915513-G-T **
2783557-G-T 2915516-G-T **
2835657-G-A 2967616-G-A **
2959365-G-T 3091324-G-T **
3649886-G-T 3781845-G-T **
2967023-G-T 3098982-G-T **
3046050-C-A 3178009-C-A **
3062685-C-A 3194644-C-A **
3199713-G-T 3331672-G-T **
3363959-G-T 3495918-G-T **
3385679-T-A 3517638-T-A **
3437013-G-T 3568972-G-T **
3437051-C-G 3569010-C-G **
3437286-A-G 3569245-A-G **
3548645-T-C 3680604-T-C **
5088775-G-TT 5220734-G-TT **
5149230-A-G 5281189-A-G **
2683950-A-G 2815909-A-G **
6630735-A-T 6762694-A-T **
6365110-C-A 6497069-C-A **
6407058-CTT-C 6539017-CTT-C **
6493943-A-G 6625902-A-G **
6493949-G-A 6625908-G-A **
6493954-A-AGG 6625913-A-AGG **
6508862-G-C 6640821-G-C **
6508939-C-A 6640898-C-A 8×A**
6512361-A-G 6644320-A-G **
6577097-C-A 6709056-C-A **
6577170-A-G 6709129-A-G **
6630742-G-A 6762701-G-A **
6054861-C-A 6186820-C-A **
6630753-G-C 6762712-G-C **
6630757-T-G 6762716-T-G **
6637295-A-G 6769254-A-G **
6637303-G-C 6769262-G-C **
6637316-G-A 6769275-G-A **
6644827-C-T 6776786-C-T **
6698930-C-T 6830889-C-T **
6698936-G-C 6830895-G-C **
6767721-C-A 6899680-C-A **
6792405-G-A 6924364-G-A **
6351953-G-A 6483912-G-A **
5932656-T-C 6064615-T-C **
5149419-T-A 5281378-T-A **
5540410-G-C 5672369-G-C **
5204216-T-A 5336175-T-A **
5219191-A-G 5351150-A-G **
5231889-TC-T 5363848-TC-T **
5240833-T-C 5372792-T-C **
5246624-G-T 5378583-G-T **
5317602-G-T 5449561-G-T **
5325538-C-T 5457497-C-T **
5453253-G-T 5585212-G-T **
5453397-A-G 5585356-A-G **
5538657-AT-A 5670616-AT-A 10×T**
5593351-T-C 5725310-T-C **
5931951-G-A 6063910-G-A **
5600608-T-TG 5732567-T-TG 12×TG**
5604277-C-A 5736236-C-A **
5604359-C-A 5736318-C-A **
5718847-G-T 5850806-G-T **
5761493-G-A 5893452-G-A **
5821930-A-G 5953889-A-G **
5822592-A-G 5954551-A-G **
5829183-C-A 5961142-C-A **
5851220-C-A 5983179-C-A **
5931916-CT-C 6063875-CT-C 32×T**
2685091-C-A 2817050-C-A **
4589363-T-C 4721322-T-C **
2683946-T-C 2815905-T-C **
56832211-C-A **
14986679-G-GCT 12874747-G-GCT **
7313602-C-A 7445561-C-A **
4811022-G-T 4942981-G-T **
10915071-G-A **
16964160-C-A 14852280-C-A **
19206631-T-C 17094751-T-C **
19206637-T-G 17094757-T-G **
24244634-A-G 22098487-A-G P3_b1 **
17264936-A-T 15153056-A-T **
13611180-G-C 11455504-G-C **
21725439-C-A 19563553-C-A **
10915072-G-T **
10750407-C-A **
22289361-C-G 20127475-C-G DYZ19 **
10673948-C-CATTTT **
13209621-C-A 11053945-C-A **
23048222-C-A 20886336-C-A **
2855590-A-G 2987549-A-G **
13611173-G-A 11455497-G-A **
18465300-G-T 16353420-G-T P6_Dst **
13962095-A-C 11841389-A-C **
22088760-A-G 19926874-A-G **
22872452-C-A 20710566-C-A **
3605979-C-A 3737938-C-A **
8907892-C-A 9039851-C-A **
10915040-T-C **
22991156-AT-A 20829270-AT-A **
15151498-G-T 13039585-G-T **
17058643-C-T 14946763-C-T **
6917073-T-TC 7049032-T-TC **
9932543-C-A 10094934-C-A **
13468216-G-A 11312540-G-A **
8110040-T-C 8241999-T-C **
22645014-A-G 20483128-A-G **
15565939-CAAAA-C 13454059-CAAAA-C 16×A**
13611189-G-A 11455513-G-A **
16541-A-G **
2701330-T-C 2833289-T-C **
10689089-A-ACTCCAC **
21240474-G-T 19078588-G-T **
10667010-A-C **
10662946-A-T **
10689118-C-A **
19733304-T-C 17621424-T-C P5_Prx **
2957323-CTT-C 3089282-CTT-C 15×T**
10632604-C-A **
21361861-C-A 19199975-C-A **
13253199-G-GTTT 11097523-G-GTTT 14×T**
10986803-TAATTTCA-T **
21022789-A-AG 18860903-A-AG P4_Dst **
10901256-T-A **
16516096-T-G 14404216-T-G **
10689126-T-C **
10986799-A-C **
2669864-G-T 2801823-G-T **
16516098-G-A 14404218-G-A **
16516104-C-T 14404224-C-T **
10689106-T-C **
10689096-TCCATGC-T **
7316596-T-C 7448555-T-C **
13471930-T-A 11316254-T-A ***
21930802-A-G 19768916-A-G ***
13822017-TC-T 11701311-TC-T ***
9985106-T-C 10147497-T-C ***
16412731-CA-C 14300851-CA-C 8×A***
13685717-T-C 11530041-T-C ***
16754275-G-A 14642395-G-A ***
7208637-C-A 7340596-C-A ***
21954069-C-A 19792183-C-A ***
13824196-C-A 11703490-C-A ***
22484989-A-T 20323103-A-T DYZ19 ***
26320894-TA-T 24174747-TA-T P1_Y1 ***
5864939-A-G 5996898-A-G ***
22966197-C-A 20804311-C-A ***
16296010-T-A 14184130-T-A ***
13869209-GGAAAT-G 11748503-GGAAAT-G ***
22489435-G-T 20327549-G-T DYZ19 ***
22202207-C-A 20040321-C-A ***
22505855-G-A 20343969-G-A FGC31690 DYZ19 ***
13448328-T-A 11292652-T-A ***
7334744-A-T 7466703-A-T ***
22023877-T-A 19861991-T-A ***
13447912-A-G 11292236-A-G ***
22485020-C-T 20323134-C-T DYZ19 ***
10763302-A-ACCA,T ***
23793592-C-T 21631706-C-T ***
23793593-A-G 21631707-A-G ***
13479048-A-T 11323372-A-T ***
18980345-C-A 16868465-C-A ***
22783681-C-A 20621795-C-A ***
15022824-GTTTT-G 12910913-GTTT-G 16×T***
14374721-C-A 12254017-C-A ***
7205519-C-A 7337478-C-A ***
13468292-T-A 11312616-T-A ***
6933446-T-C 7065405-T-C ***
13684815-T-TCTAAC 11529139-T-TCTAAC ***
13684804-A-AAGTAG 11529128-A-AAGTAG ***
13809772-T-A 11689066-T-A ***
6764527-TTATTCA-T 6896486-TTATTCA-T ***
6765085-T-G 6897044-T-G ***
13447905-C-G 11292229-C-G ***
14036734-C-A 11916028-C-A ***
19128805-GAA-G 17016925-GAA-G 18×A***
22454860-G-T 20292974-G-T DYZ19 ***
13863626-C-T 11742920-C-T ***
9977749-G-A 10140140-G-A ***
24446636-C-A 22300489-C-A ***
22475593-T-G 20313707-T-G DYZ19 ***
6880961-C-A 7012920-C-A ***
22485036-A-G 20323150-A-G DYZ19 ***
15358745-T-A 13246864-T-A ***
13801933-T-G 11681227-T-G ***
6793405-G-T 6925364-G-T ***
28781707-C-A 26635560-C-A ***
18070191-CTT-C 15958311-CTT-C 15×T***
56756868-G-C ***
56836609-T-C ***
13453199-G-C 11297523-G-C ***
21099740-C-CT 18937854-C-CT 16×T***
7367933-GAA-G 7499892-GAA-G 16×A***
24405527-C-A 22259380-C-A ***
13855132-G-A 11734426-G-A ***
14283265-A-T 12162559-A-T ***
13406422-G-A 11250746-G-A ***
13856507-A-G 11735801-A-G ***
7133888-C-T 7265847-C-T ***
23244780-C-A 21082894-C-A ***
7133882-A-G 7265841-A-G ***
16819638-CA-C 14707758-CA-C 9×A***
13798841-T-A 11678135-T-A ***
14385184-C-A 12264480-C-A ***
13681982-T-G 11526306-T-G ***
10814453-C-A ***
6957799-C-A 7089758-C-A ***
14278249-G-A 12157543-G-A ***
18039366-ATTT-A 15927486-ATTT-A 30×T***
13489705-A-T 11334029-A-T ***
13456656-T-C 11300980-T-C ***
22485012-G-A 20323126-G-A DYZ19 ***
13686912-C-T 11531236-C-T 10×GAATG***
13814091-G-A 11693385-G-A ***
13814087-A-G 11693381-A-G ***
13685722-T-A 11530046-T-A ***
14886399-CAA-C 12774465-CAA-C 21×A***
6671697-C-G 6803656-C-G ***
13809712-T-A 11689006-T-A ***
14073869-C-A 11953163-C-A ***
6741507-T-C 6873466-T-C ***
13462944-A-T 11307268-A-T ***
6944192-A-T 7076151-A-T ***
7429875-C-A 7561834-C-A ***
15527953-C-A 13416073-C-A ***
17315978-C-A 15204098-C-A ***
9902390-C-A 10064781-C-A ***
24422595-G-A 22276448-G-A ***
15818368-C-A 13706488-C-A ***
15758345-A-G 13646465-A-G ***
56756856-A-T ***
3849590-C-A 3981549-C-A ***
17474659-C-A 15362779-C-A ***
9520326-G-T 9682717-G-T ***
10754742-C-T ***
9114203-T-C 9276594-T-C ***
17628801-G-T 15516921-G-T ***
13453193-C-G 11297517-C-G ***
6831116-C-A 6963075-C-A ***
17749427-C-A 15637547-C-A ***
17760347-CTTT-C,CT 15648467-CTTT-C,CT 14×T***
3374008-G-T 3505967-G-T ***
17792132-C-A 15680252-C-A ***
4271999-C-A 4403958-C-A ***
9048664-C-A 9211055-C-A ***
4473824-A-G 4605783-A-G ***
6674465-ATTTT-A 6806424-ATTTT-A 16×T***
56756860-A-C ***
18237598-C-A 16125718-C-A ***
16598983-AC-A,AA 14487103-AC-A,AA ***
10744413-A-C,T ***
8988794-C-A 9151185-C-A ***
14589975-G-T 12478175-G-T ***
10987208-A-G ***
10999880-A-T ***
10828177-C-A,CGGAAG ***
10626825-C-T ***
10925501-T-C,TAACTT ***
2756837-C-A 2888796-C-A ***
16445468-C-A 14333588-C-A ***
13453184-C-A 11297508-C-A ***
15358739-C-A 13246858-C-A ***
13489119-GCTGGATGAGCTC-G,GCTGGATGAGCTA 11333443-GCTGGATGAGCTC-G,GCTGGATGAGCTA ***
2809540-ATT-A,ATTT 2941499-ATT-A,ATTT 18×T***
13808729-G-C 11688023-G-C ***
21426916-C-A 19265030-C-A ***
5957075-CATAT-C 6089034-CATAT-C ***
16705464-G-T 14593584-G-T ***
16754261-T-G 14642381-T-G ***
16765146-A-G 14653266-A-G ZQ413 ***
10673942-G-GAATTC ***
2869077-T-C 3001036-T-C ***
2803834-C-A 2935793-C-A ***
16942893-C-A 14831013-C-A ***
10796666-C-G ***
15942768-A-G 13830888-A-G ***
10022914-C-A 10185305-C-A ***
18385707-A-T 16273827-A-T P6_Gap ***
18659515-C-A 16547635-C-A ***
26320915-T-C 24174768-T-C P1_Y1 ***
13477264-C-A 11321588-C-A ***
10785299-A-T ***
13867250-A-G 11746544-A-G ***
20554358-G-T 18392472-G-T P5_Dst ***
13858798-T-A 11738092-T-A ***
13858660-G-A 11737954-G-A ***
13843150-T-A 11722444-T-A ***
13822077-G-C 11701371-G-C ***
13462958-C-T 11307282-C-T ***
15064365-C-A 12952457-C-A ***
16225807-C-A 14113927-C-A ***
6753302-C-CTT 6885261-C-CTT ***
19476392-C-A 17364512-C-A ***
8505943-C-A 8637902-C-A ***
7697718-T-C 7829677-T-C ***
21210995-C-A 19049109-C-A ***
7657669-G-GCA 7789628-G-GCA ***
5358522-A-T 5490481-A-T ***
13611035-C-A 11455359-C-A ***
21282587-C-A 19120701-C-A ***
21300332-T-C 19138446-T-C ***
13451121-C-A 11295445-C-A ***
10019582-TTTTC-T,TTTT 10181973-TTTTC-T,TTTT ***
13449630-AAAA-GAAA,GAC 11293954-AAAA-GAAA,GAC ***
22454945-A-C,G 20293059-A-C,G DYZ19 ***
8386226-C-A 8518185-C-A ***
8525506-C-A 8657465-C-A ***
56756880-A-G ***
13219912-C-A 11064236-C-A ***
13446531-ATTCCATTC-A,ACTCCATTC 11290855-ATTCCATTC-A,ACTCCATTC ***
15224380-C-A 13112466-C-A ***
8870027-A-C 9001986-A-C ***
18795195-C-A 16683315-C-A ***
18853678-A-G 16741798-A-G ***
10785304-A-C ***
15193838-G-A 13081924-G-A ***
8837757-G-T 8969716-G-T ***
8822675-C-A 8954634-C-A ***
4862509-T-C 4994468-T-C ***
15193836-G-T 13081922-G-T ***
13472168-C-A 11316492-C-A ***
8590000-G-C 8721959-G-C ***
19045461-C-A 16933581-C-A ***
13447698-A-C,CAACAC 11292022-A-C,CAACAC ***
19255274-C-A 17143394-C-A ***
13446479-G-T 11290803-G-T ***
8703082-C-T 8835041-C-T ***
28799815-A-T 26653668-A-T ***
28799814-C-T 26653667-C-T ***
8676890-C-A 8808849-C-A ***
13488930-G-T 11333254-G-T ***
5199968-C-A 5331927-C-A ***
8654007-C-A 8785966-C-A ***
13820803-G-C 11700097-G-C ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

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