Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > L1335/S530 > L1065 > Z16325 > S744 > S764 > S756 > Z16328 > FGC32449 > BY154 > FGC17059 > FGC50014

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFGC
GC9EM
4939920-G-C 5071879-G-C +
21880522-T-C 19718636-T-C YY+
6433196-G-C 6565155-G-C +
18634943-A-G 16523063-A-G YY+
28543349-G-C 26397202-G-C +
18127004-A-G 16015124-A-G YY+
13260984-T-A 11105308-T-A **
22480212-T-C 20318326-T-C DYZ19 **
3970484-A-AC 4102443-A-AC **
22636083-G-C 20474197-G-C **
6953202-T-TAC 7085161-T-TAC 17×AC**
23362468-T-A 21200582-T-A **
27952091-GTATATA-G 25805944-GTATATA-G P1_Y2 19×TA**
13692331-G-A 11536655-G-A **
59019088-C-T 56872941-C-T **
3029081-C-A 3161040-C-A **
15637982-A-G 13526102-A-G **
7349042-T-A 7481001-T-A **
14724697-T-A 12612765-T-A **
22624644-C-A 20462758-C-A ***
25647822-G-C 23501675-G-C P1_b3 ***
21996282-A-G 19834396-A-G ***
22013456-T-C 19851570-T-C ***
22320342-A-G 20158456-A-G DYZ19 ***
22366228-G-A 20204342-G-A DYZ19 ***
25496740-T-C 23350593-T-C P2_r2 ***
22489966-T-A 20328080-T-A DYZ19 ***
22510740-T-A 20348854-T-A DYZ19 ***
22510804-G-C 20348918-G-C DYZ19 ***
25379177-T-C 23233030-T-C P2_r2 ***
22767338-T-C 20605452-T-C ***
25201363-A-G 23055216-A-G g1 ***
22755332-A-G 20593446-A-G ***
22767342-T-A 20605456-T-A ***
25008509-A-C 22862362-A-C g1 ***
22981763-T-A 20819877-T-A ***
23317818-C-T 21155932-C-T ***
24893129-G-A 22746982-G-A g1 ***
23455194-C-T 21293308-C-T ***
24882288-G-A 22736141-G-A g1 ***
24221572-A-C 22075425-A-C P3_b1 ***
23825029-A-T 21663143-A-T ***
24072583-C-T 21926436-C-T P3_b1 ***
21697698-T-G 19535812-T-G ***
13869198-T-A 11748492-T-A ***
21697697-C-A 19535811-C-A ***
17251051-G-A 15139171-G-A ***
18577807-T-C 16465927-T-C ***
18565377-G-A 16453497-G-A ***
18409390-T-G 16297510-T-G P6_Gap ***
18290443-G-A 16178563-G-A P6_Prx ***
17372523-G-A 15260643-G-A ***
17324090-G-A 15212210-G-A ***
17056772-G-A 14944892-G-A ***
19037902-A-C 16926022-A-C ***
17030708-G-T 14918828-G-T ***
16947385-T-A 14835505-T-A ***
16947366-T-A 14835486-T-A ***
16914835-T-A 14802955-T-A ***
16685419-A-G 14573539-A-G ***
16685276-G-A 14573396-G-A ***
18861675-A-T 16749795-A-T ***
19112670-T-A 17000790-T-A ***
21525924-T-G 19364038-T-G ***
20752441-C-T 18590555-C-T P4_Prx ***
21355435-G-C 19193549-G-C ***
21337812-G-C 19175926-G-C ***
25850899-G-A 23704752-G-A P1_Y1 ***
21189516-A-G 19027630-A-G ***
21189515-G-T 19027629-G-T ***
21115607-T-C 18953721-T-C ***
20662574-G-T 18500688-G-T P4_Prx ***
19155400-G-A 17043520-G-A ***
20612545-A-C 18450659-A-C P4_Prx ***
19771209-G-T 17659329-G-T P5_Prx ***
19553950-C-T 17442070-C-T ***
19355823-T-A 17243943-T-A ***
19295534-C-T 17183654-C-T ***
19253750-G-A 17141870-G-A ***
21320705-G-T 19158819-G-T ***
27590489-G-T 25444342-G-T P1_Y2 ***
26354825-C-T 24208678-C-T P1_Y1 ***
5354771-CAT-C 5486730-CAT-C 11×AT***
13455140-CATTC-TATTT 11299464-CATTC-TATTT ***
9949465-A-AT 10111856-A-AT 8×T***
8428944-CAAAAAAAAA-C 8560903-CAAAAAAAAA-C 25×A***
7364367-GTTTTTT-G 7496326-GTTTTTT-G 27×T***
6388515-G-GA 6520474-G-GA ***
5739062-GT-G 5871021-GT-G 10×T***
5240906-C-CCCTT 5372865-C-CCCTT ***
13711408-CGG-TGA 11555732-CGG-TGA ***
4554121-AAAGG-A 4686080-AAAGG-A 4×AAGG***
3930563-G-GTATA 4062522-G-GTATA 21×TA***
3640528-TTTCTTTCC-T 3772487-TTTCTTTCC-T ***
2836350-CTTTTT-C 2968309-CTTTTT-C 19×T***
3963856-G-AA 4095815-G-AA ***
19263496-G-GA 17151616-G-GA 14×A***
13588209-C-CAT 11432533-C-CAT 8×AT***
13713300-GATGG-AATGC 11557624-GATGG-AATGC ***
58984609-G-T 56838462-G-T ***
25511351-A-AT 23365204-A-AT P1_gr1 14×T***
58979456-GCC-TCT 56833309-GCC-TCT ***
58972948-CGG-GTT 56826801-CGG-GTT ***
58972918-CGAT-GCAA 56826771-CGAT-GCAA ***
58972900-CTTTGAG-ATTGAAC 56826753-CTTTGAG-ATTGAAC ***
28786681-ATGGAA-TAGGAG 26640534-ATGGAA-TAGGAG ***
28784383-AT-GA 26638236-AT-GA ***
24415718-TTATATATATATATATATATATATA-T 22269571-TTATATATATATATATATATATATA-T 31×TA***
13808670-GAATGGAATGGAATAC-G 11687964-GAATGGAATGGAATAC-G ***
22508362-AGTG-TGTT 20346476-AGTG-TGTT DYZ19 ***
22458034-GTGTCCAGAG-TTCTCCTGAC 20296148-GTGTCCAGAG-TTCTCCTGAC DYZ19 ***
22458025-CC-AA 20296139-CC-AA DYZ19 ***
17663118-C-CAAAAAAA 15551238-C-CAAAAAAA 26×A***
13869148-AAGAA-TAGAT 11748442-AAGAA-TAGAT ***
13865986-AATG-CATC 11745280-AATG-CATC ***
3790864-A-ATG 3922823-A-ATG ***
58982160-G-A 56836013-G-A ***
26355217-T-G 24209070-T-G P1_Y1 ***
27868982-T-C 25722835-T-C P1_Y2 ***
28619214-C-T 26473067-C-T ***
28619208-G-C 26473061-G-C ***
28619165-C-T 26473018-C-T ***
28234314-T-G 26088167-T-G P1_b4 ***
28234306-T-G 26088159-T-G P1_b4 ***
27883149-A-G 25737002-A-G P1_Y2 ***
27860583-A-G 25714436-A-G P1_Y2 ***
28619223-G-A 26473076-G-A ***
27791747-T-A 25645600-T-A P1_Y2 ***
27637405-C-T 25491258-C-T P1_Y2 ***
27595779-C-G 25449632-C-G P1_Y2 ***
16607594-G-T 14495714-G-T ***
27168247-T-C 25022100-T-C P1_g3 ***
26466808-T-C 24320661-T-C P1_Y1 ***
28619215-A-G 26473068-A-G ***
28619237-T-G 26473090-T-G ***
58979878-T-A 56833731-T-A ***
58972904-G-A 56826757-G-A ***
58979838-T-A 56833691-T-A ***
58973010-A-G 56826863-A-G ***
58972949-G-T 56826802-G-T ***
58972948-C-G 56826801-C-G ***
58972918-C-G 56826771-C-G ***
58972906-G-C 56826759-G-C ***
58972903-T-G 56826756-T-G ***
28619245-A-G 26473098-A-G ***
58865946-C-A 56724925-G-T ***
58833940-G-C 56756931-C-G ***
28786672-T-A 26640525-T-A ***
28786659-G-A 26640512-G-A ***
28784384-T-A 26638237-T-A ***
28619257-C-A 26473110-C-A ***
28619252-G-T 26473105-G-T ***
16685275-T-C 14573395-T-C ***
16070208-C-T 13958328-C-T ***
16583276-T-G 14471396-T-G ***
13478407-G-A 11322731-G-A ***
13480242-T-A 11324566-T-A ***
13869318-TCA-CCG 11748612-TCA-CCG ***
3350514-C-A 3482473-C-A 15×A***
3550568-ACAACTC-A 3682527-ACAACTC-A ***
58982153-C-T 56836006-C-T ***
13141990-CA-AC 10631476-CA-AC ***
13478362-G-C 11322686-G-C ***
9303203-A-C 9465594-A-C ***
4236471-CA-C 4368430-CA-C 17×A***
13924970-CA-C 11804264-CA-C 20×A***
16786213-CTTTTTTTT-C 14674333-CTTTTTTTT-C 22×T***
58972950-G-T 56826803-G-T ***
59015147-G-T 56869000-G-T ***
22477922-CTGTT-ATGGG 20316036-CTGTT-ATGGG DYZ19 ***
58858896-C-G 56731975-G-C ***
8333626-A-C 8465585-A-C 25×CTT***
22292137-T-C 20130251-T-C DYZ19 ***
2939291-T-G 3071250-T-G ***
4614516-G-A 4746475-G-A ***
4414319-T-C 4546278-T-C ***
3956714-A-T 4088673-A-T ***
3439865-A-C 3571824-A-C ***
3391470-G-T 3523429-G-T ***
3124197-T-C 3256156-T-C ***
2939281-T-A 3071240-T-A ***
13869120-G-C 11748414-G-C ***
2845771-A-G 2977730-A-G ***
2817069-T-A 2949028-T-A ***
2770484-C-A 2902443-C-A ***
20815462-T-C 18653576-T-C P4_Gap 12×AC***
28619224-T-C 26473077-T-C ***
28619222-T-C 26473075-T-C ***
22292118-T-A 20130232-T-A DYZ19 ***
22292116-C-A 20130230-C-A DYZ19 ***
4716346-T-A 4848305-T-A ***
7534406-G-GTTT 7666365-G-GTTT 19×T***
9854343-CTTT-C 10016734-CTTT-C 19×T***
59029076-AG-A 56882929-AG-A ***
13263735-C-G 11108059-C-G ***
3378851-C-CA 3510810-C-CA 13×A***
14776923-CA-C 12664992-CA-C 15×A***
17307191-TATTGCATTGC-T 15195311-TATTGCATTGC-T 12×ATTGC***
13884396-G-A 11763690-G-A ***
59012085-T-C 56865938-T-C ***
22477936-AG-A 20316050-AG-A DYZ19 ***
58872540-C-T 56718331-G-A ***
26376499-CA-C 24230352-CA-C P1_Y1 18×A***
26024548-C-CT 23878401-C-CT P1_Y1 17×T***
22292152-G-T 20130266-G-T DYZ19 ***
22292149-C-G 20130263-C-G DYZ19 ***
24387457-CAT-C 22241310-CAT-C ***
59012364-A-T 56866217-A-T ***
9949430-C-A 10111821-C-A ***
15321328-GT-G 13209446-GT-G 25×T***
9949413-A-T 10111804-A-T ***
9645653-CTTTTT-C 9808044-CTTTTT-C IR3_Prx 20×T***
58984628-A-T 56838481-A-T ***
13485537-TATGTC-CGTGTA 11329861-TATGTC-CGTGTA ***
13459292-A-T 11303616-A-T ***
13459332-A-T 11303656-A-T ***
27423515-G-GTATATA 25277368-G-GTATATA P1_g3 24×TA***
59012367-T-G 56866220-T-G ***
8124920-T-TA 8256879-T-TA 15×A***
22359444-C-T 20197558-C-T DYZ19 ***
5434003-A-AAT 5565962-A-AAT 8×AT***
13859374-GG-CA 11738668-GG-CA ***
59020900-T-C 56874753-T-C ***
59019171-T-C 56873024-T-C ***
4716322-T-A 4848281-T-A ***
4758012-G-T 4889971-G-T ***
16583257-C-T 14471377-C-T ***
13658201-T-G 11502525-T-G ***
13866589-G-A 11745883-G-A ***
13844003-T-G 11723297-T-G ***
13713226-A-G 11557550-A-G ***
13701838-A-T 11546162-A-T ***
13701818-G-T 11546142-G-T ***
13695435-T-G 11539759-T-G ***
13655722-G-T 11500046-G-T ***
13869152-A-T 11748446-A-T ***
13494757-G-C 11339081-G-C ***
13482024-C-T 11326348-C-T ***
13480710-G-A 11325034-G-A ***
13480709-A-T 11325033-A-T ***
13480695-C-A 11325019-C-A ***
13478353-G-T 11322677-G-T ***
13869135-G-A 11748429-G-A ***
13915705-C-A 11794999-C-A ***
13466279-C-T 11310603-C-T ***
15999745-A-G 13887865-A-G ***
16474791-T-C 14362911-T-C ***
16091049-G-T 13979169-G-T ***
16079330-G-A 13967450-G-A ***
22292107-G-A 20130221-G-A DYZ19 ***
16070205-C-G 13958325-C-G ***
16051000-T-C 13939120-T-C ***
15912207-C-T 13800327-C-T ***
13936191-A-G 11815485-A-G ***
15658133-C-T 13546253-C-T ***
15658129-T-C 13546249-T-C ***
15323659-A-C 13211777-A-C ***
14635439-A-G 12523508-A-G ***
14294097-A-G 12173391-A-G ***
14047831-G-T 11927125-G-T ***
13470534-G-A 11314858-G-A ***
13466271-G-C 11310595-G-C ***
4913032-G-T 5044991-G-T ***
6533572-A-G 6665531-A-G ***
7635906-G-T 7767865-G-T ***
7577718-C-T 7709677-C-T ***
7497803-G-T 7629762-G-T IR1_L ***
6981316-T-G 7113275-T-G ***
6822474-A-T 6954433-A-T ***
6798997-T-C 6930956-T-C ***
6093694-T-G 6225653-T-G ***
8370784-G-A 8502743-G-A ***
5918073-C-T 6050032-C-T ***
5488616-C-A 5620575-C-A ***
5424147-C-T 5556106-C-T ***
5204486-G-T 5336445-G-T ***
5197096-G-A 5329055-G-A ***
4949178-C-A 5081137-C-A ***
8333632-T-C 8465591-T-C ***
8663554-T-G 8795513-T-G ***
13459269-T-G 11303593-T-G ***
10075082-G-A 10237473-G-A ***
13457874-T-C 11302198-T-C ***
13455144-C-T 11299468-C-T ***
13455140-C-T 11299464-C-T ***
13341039-G-A 11185363-G-A ***
13308554-G-A 11152878-G-A ***
13142002-A-C 10631488-A-C ***
10069032-A-G 10231423-A-G ***
9307177-T-G 9469568-T-G ***
9949478-C-G 10111869-C-G ***
9853039-A-C 10015430-A-C ***
9830750-A-G 9993141-A-G ***
9682442-A-C 9844833-A-C IR3_Prx ***
9486490-T-G 9648881-T-G ***
9316024-A-G 9478415-A-G ***
58982153-CTCACTCG-TTCCCTCA 56836006-CTCACTCG-TTCCCTCA ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: GC9EM1471587992093298262630
Used in age calculations1471587992093298262630
Counts of SNPs33
Variant counts last updated 2017-11-13 20:58:13.



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