Cwiklik

FTDNA: 558723, BigY2: 558723

Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > ZZ12 > ZZ19 > Z31644 > Z42772

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
558723		BigY2
558723
20791771-C-T 18629885-C-T P4_Prx ***A*
19688830-C-G 17576950-C-G P5_Prx ***A*
22256046-G-C 20094160-G-C DYZ19 ***A*
22234172-A-C 20072286-A-C DYZ19 ***A*
22232358-T-A 20070472-T-A DYZ19 ***A*
23298091-C-CT 21136205-C-CT 10×TA*
19614606-G-T 17502726-G-T P5_Prx Y***A*
19963581-C-T 17851701-C-T P5_Prx ***A*
19999107-A-C 17887227-A-C P5_Prx ***A*
20031835-A-T 17919955-A-T P5_Prx ***A*
25894816-G-C 23748669-G-C P1_Y1 ***A*
26094590-C-T 23948443-C-T P1_Y1 ***A*
20648642-G-A 18486756-G-A P4_Prx ***A*
16408446-CG-C 14296566-CG-C ++
15514354-C-A 13402474-C-A Y93992 YY++
15524361-T-C 13412481-T-C Y94024 YY++
15650940-C-T 13539060-C-T Y94348 YY++
16367743-T-A 14255863-T-A Y96114 YY++
17181242-C-T 15069362-C-T Y98398 YY++
16561778-C-T 14449898-C-T Y96690 YY++
16597433-A-C 14485553-A-C Y96802 YY++
16788705-C-T 14676825-C-T Y97296 YY++
17041106-G-A 14929226-G-A Y98031 YY++
15016691-T-C 12904780-T-C Y92781 YY++
21411279-G-A 19249393-G-A Y106413 YY++
17821230-G-A 15709350-G-A YP4028 YY++
19124705-G-C 17012825-G-C Y103732 YY++
15212347-A-C 13100433-A-C Y93287 YY++
17595190-T-C 15483310-T-C Y99660 YY++
14623807-T-C 12512005-T-C Y91842 YY++
14158970-A-T 12038264-A-T Y90477 YY++
24371640-A-G 22225493-A-G Y112698 ++
23826703-T-C 21664817-T-C Y++
23359114-C-A 21197228-C-A Y111366 YY++
22815470-C-A 20653584-C-A Y109858 YY++
22701641-TA-T 20539755-TA-T ++
22464627-C-A 20302741-C-A DYZ19 ++
7579339-T-C 7711298-T-C Y84357 YY++
7762216-A-C 7894175-A-C Y84884 YY++
8203009-C-G 8334968-C-G Y86084 YY++
8341603-A-G 8473562-A-G Y86531 YY++
8374122-G-C 8506081-G-C Y86643 YY++
8493023-G-T 8624982-G-T Y87084 YY++
8545705-G-A 8677664-G-A Y87225 YY++
8595603-C-T 8727562-C-T Y87415 YY++
9388741-C-G 9551132-C-G Y88878 Y++
10005852-A-G 10168243-A-G Y**+
20804748-T-C 18642862-T-C Y105167 P4_Gap ++
21569491-T-C 19407605-T-C Y106930 YY++
13825806-C-T 11705100-C-T Y89714 ++
22281739-G-C 20119853-G-C DYZ19 ****
13691263-G-T 11535587-G-T *
22302880-G-A 20140994-G-A Z16357BY4026 DYZ19 ****
15936798-G-T 13824918-G-T **
15252706-C-A 13140792-C-A **
15889285-C-A 13777405-C-A **
15858447-G-T 13746567-G-T **
15811383-T-C 13699503-T-C **
15789729-T-C 13677849-T-C **
15080534-T-A 12968624-T-A **
15786538-C-A 13674658-C-A **
15109211-A-G 12997298-A-G **
15120588-A-G 13008675-A-G **
15740465-G-T 13628585-G-T **
15145172-T-C 13033259-T-C **
15179037-G-T 13067123-G-T **
15198724-C-A 13086810-C-A **
15221221-C-T 13109307-C-T **
15322459-T-C 13210577-T-C **
15394411-C-T 13282531-C-T **
15358549-G-T 13246668-G-T **
15697062-C-A 13585182-C-A **
15611846-GAGGTC-G 13499966-GAGGTC-G **
15574759-A-C 13462879-A-C **
15394464-T-C 13282584-T-C **
15394459-A-C 13282579-A-C **
15394456-T-C 13282576-T-C **
15393847-C-A 13281967-C-A **
15394421-T-C 13282541-T-C **
15394344-A-G 13282464-A-G **
15394355-T-C 13282475-T-C **
15394356-G-A 13282476-G-A **
15394412-T-C 13282532-T-C **
15916194-G-T 13804314-G-T **
16450224-T-C 14338344-T-C **
15974351-C-A 13862471-C-A **
16465969-G-T 14354089-G-T **
17071231-G-A 14959351-G-A **
17071225-A-G 14959345-A-G **
17071218-G-A 14959338-G-A **
17071059-G-T 14959179-G-T **
16993575-C-A 14881695-C-A **
16828832-A-G 14716952-A-G **
16828788-C-A 14716908-C-A **
16760871-C-A 14648991-C-A **
16704307-G-T 14592427-G-T **
16636911-C-G 14525031-C-G **
16622098-G-A 14510218-G-A **
16555170-A-C 14443290-A-C **
16554686-C-A 14442806-C-A **
16514553-T-C 14402673-T-C **
16458278-ATG-A 14346398-ATG-A **
15982059-A-T 13870179-A-T **
14769352-C-A 12657421-C-A A8562 **
16431145-C-T 14319265-C-T **
16429184-G-T 14317304-G-T **
16380534-TTTTGG-T 14268654-TTTTGG-T **
16357335-A-G 14245455-A-G **
16320737-G-T 14208857-G-T Y95957 **
16290810-T-A 14178930-T-A **
16288829-T-G 14176949-T-G **
16274385-C-A 14162505-C-A **
16191617-G-T 14079737-G-T **
16044852-A-G 13932972-A-G **
16033437-A-G 13921557-A-G **
16033333-C-A 13921453-C-A **
15999651-G-T 13887771-G-T **
14788788-A-G 12676859-A-G **
13941638-G-T 11820932-G-T **
14763670-G-T 12651739-G-T **
10968365-G-T **
11655818-A-G **
11653905-T-A **
11651862-A-G **
13712345-T-A 11556669-T-A **
13555521-G-T 11399845-G-T **
13315675-G-A 11159999-G-A **
13295965-G-A 11140289-G-A **
13224071-T-A 11068395-T-A **
11037089-A-G **
11013199-A-G **
10991274-C-CTATTG **
10991271-A-T **
10991253-T-A **
10971063-T-C **
10958975-G-T **
11666385-G-C **
10948278-G-A **
10883710-T-C **
10880453-A-C **
10875752-GTTCCATTCCATTCCA-G **
10824460-T-A **
10816040-T-C **
10794094-C-A **
10791909-C-G **
10769947-A-G **
10769435-C-T **
10747869-C-T **
10689812-T-G **
10667034-C-CGGGTTA **
10667033-C-CTATT **
11657057-G-A **
11671560-G-T **
14754092-TTTG-T 12642161-TTTG-T **
14270466-G-T 12149760-G-T **
14735159-A-G 12623227-A-G **
14735098-C-A 12623166-C-A **
14693493-C-A 12581559-C-A **
14648565-T-A 12536630-T-A **
14566665-T-A 12454865-T-A **
14527829-T-C 12416030-T-C **
14489794-C-A 12369063-C-A **
14484401-G-A 12363670-G-A **
14445699-G-A 12324972-G-A Y91442 **
14366273-C-A 12245568-C-A **
14356627-C-A 12235922-C-A **
14343753-AACAAAACTATGG-A 12223048-AACAAAACTATGG-A **
14341972-T-G 12221267-T-G **
14297832-C-A 12177126-C-A **
14263244-C-A 12142538-C-A **
11677529-A-T **
14226445-A-C 12105739-A-C **
14184465-C-T 12063759-C-T **
14101040-G-T 11980334-G-T **
13989109-T-G 11868403-T-G **
13987186-T-C 11866480-T-C **
13944051-C-CAA 11823345-C-CAA 22×A**
13944049-CT-C 11823343-CT-C **
17089127-A-G 14977247-A-G **
13940054-T-C 11819348-T-C **
13868826-C-A 11748120-C-A **
13856452-G-T 11735746-G-T **
13855291-G-A 11734585-G-A **
13854400-A-C 11733694-A-C **
13809943-G-T 11689237-G-T **
17071235-G-A 14959355-G-A **
18847778-T-A 16735898-T-A **
17136891-T-G 15025011-T-G **
22993489-G-A 20831603-G-A **
24458807-G-T 22312660-G-T **
24408277-G-T 22262130-G-T **
24388581-T-C 22242434-T-C **
24378498-G-T 22232351-G-T **
24363652-A-C 22217505-A-C **
23833032-C-A 21671146-C-A **
23754828-G-T 21592942-G-T **
23491129-G-C 21329243-G-C **
23483468-T-C 21321582-T-C **
23472102-A-G 21310216-A-G **
23279455-G-T 21117569-G-T **
23187771-C-A 21025885-C-A **
22995465-C-A 20833579-C-A **
22993501-TGT-A 20831615-TGT-A **
22993488-T-C 20831602-T-C **
25722680-G-T 23576533-G-T P1_b3 **
22993478-A-G 20831592-A-G **
22993467-A-C 20831581-A-C **
22912731-TTTTGGGCTCCTAATGAAAATCTAA-T 20750845-TTTTGGGCTCCTAATGAAAATCTAA-T **
22824925-T-A 20663039-T-A **
22577042-AGGATCAT-A 20415156-AGGATCAT-A **
22536769-A-G 20374883-A-G **
22505898-A-G 20344012-A-G DYZ19 **
22306676-G-T 20144790-G-T DYZ19 **
22167298-C-T 20005412-C-T **
22147422-C-A 19985536-C-A **
22093155-A-G 19931269-A-G **
22050299-G-T 19888413-G-T **
22032588-C-A 19870702-C-A **
22011604-C-A 19849718-C-A **
24667948-G-A 22521801-G-A P3_b2 **
26055619-T-C 23909472-T-C P1_Y1 **
21875026-C-A 19713140-C-A **
28661063-T-C 26514916-T-C **
56860321-C-A **
56850811-G-A **
56850107-A-G **
56836205-C-A **
56832867-T-A **
56763546-G-A **
56763531-G-A **
56742717-G-C **
56681981-G-C **
28808619-G-T 26662472-G-T **
28802842-T-G 26656695-T-G **
28773672-C-A 26627525-C-A **
28746313-G-T 26600166-G-T **
28726618-A-C 26580471-A-C **
28591232-G-A 26445085-G-A **
26089947-ATTTTTTTAT-A 23943800-ATTTTTTTAT-A P1_Y1 **
28561911-A-T 26415764-A-T **
28537003-C-A 26390856-C-A **
28476170-T-C 26330023-T-C **
28471617-T-A 26325470-T-A **
28099303-T-C 25953156-T-C P1_Y2 **
27991216-A-T 25845069-A-T P1_Y2 **
27966777-G-A 25820630-G-A P1_Y2 **
27763251-C-CTA 25617104-C-CTA P1_Y2 **
27763241-ATT-A 25617094-ATT-A P1_Y2 **
27763238-A-T 25617091-A-T P1_Y2 **
27616414-A-T 25470267-A-T P1_Y2 **
27398534-GAGC-G 25252387-GAGC-G P1_g3 **
26415894-G-T 24269747-G-T P1_Y1 **
26228634-C-A 24082487-C-A P1_Y1 **
21875712-C-A 19713826-C-A **
21824924-G-A 19663038-G-A **
17204180-C-A 15092300-C-A **
18197839-C-T 16085959-C-T **
19145372-C-A 17033492-C-A **
19126338-T-A 17014458-T-A **
19040636-A-G 16928756-A-G **
18969167-C-A 16857287-C-A **
18945337-C-A 16833457-C-A **
18853625-A-T 16741745-A-T **
18728968-G-C 16617088-G-C **
18728940-A-G 16617060-A-G **
18585691-C-A 16473811-C-A **
18546389-C-A 16434509-C-A **
18524402-C-A 16412522-C-A P6_Dst **
18416515-CAACCTGAAA-C 16304635-CAACCTGAAA-C P6_Gap **
18355816-C-A 16243936-C-A P6_Prx **
18247431-C-A 16135551-C-A **
18145609-C-T 16033729-C-T **
19226081-C-A 17114201-C-A **
18128008-G-T 16016128-G-T **
18106865-C-A 15994985-C-A **
17962728-C-A 15850848-C-A **
17927508-A-G 15815628-A-G **
17903589-C-A 15791709-C-A **
17871652-A-G 15759772-A-G **
17824203-C-G 15712323-C-G **
17633148-C-A 15521268-C-A **
17624404-C-T 15512524-C-T Y21838 **
17597861-C-A 15485981-C-A **
17534883-G-T 15423003-G-T **
17434183-C-A 15322303-C-A **
17403865-C-A 15291985-C-A **
17386749-C-T 15274869-C-T **
19146630-T-G 17034750-T-G **
19233170-A-G 17121290-A-G **
21818841-G-T 19656955-G-T **
21228218-C-A 19066332-C-A **
21809953-T-G 19648067-T-G **
21796646-C-T 19634760-C-T **
21796613-G-C 19634727-G-C **
21787395-TCTTTTGG-T 19625509-TCTTTTGG-T **
21703190-AACAC-A 19541304-AACAC-A **
21631542-C-T 19469656-C-T **
21546209-C-A 19384323-C-A **
21433190-C-A 19271304-C-A **
21382551-A-G 19220665-A-G **
21366067-C-A 19204181-C-A **
21323598-A-T 19161712-A-T **
21316802-CCTG-C 19154916-CCTG-C **
21315043-A-C 19153157-A-C **
21298990-C-G 19137104-C-G **
21203867-C-A 19041981-C-A **
19294963-C-A 17183083-C-A **
20635655-C-A 18473769-C-A P4_Prx **
19297912-G-T 17186032-G-T **
19338237-A-T 17226357-A-T **
19439604-C-T 17327724-C-T **
19461963-C-T 17350083-C-T **
19700796-C-A 17588916-C-A P5_Prx **
19872554-A-T 17760674-A-T P5_Prx **
20772513-T-C 18610627-T-C P4_Prx **
21136804-C-A 18974918-C-A F23930 **
20794445-TCA-T 18632559-TCA-T P4_Prx **
20849712-A-AG 18687826-A-AG P4_Dst **
20868005-T-A 18706119-T-A P4_Dst **
20881879-T-C 18719993-T-C P4_Dst **
20943469-T-C 18781583-T-C P4_Dst **
21118493-G-T 18956607-G-T **
10666969-T-G **
10647660-C-A **
10653710-A-C **
2794924-C-A 2926883-C-A **
2845781-C-A 2977740-C-A **
2845746-T-A 2977705-T-A **
2845121-C-A 2977080-C-A **
2767692-C-A 2899651-C-A **
2702361-C-G 2834320-C-G **
7172368-G-T 7304327-G-T **
21651683-C-A 19489797-C-A **
23259361-C-A 21097475-C-A **
14128221-C-A 12007515-C-A **
10927705-TTTCCA-T **
21703184-C-A 19541298-C-A **
23184446-G-T 21022560-G-T **
8076254-C-A 8208213-C-A **
28537175-G-A 26391028-G-A **
2853346-T-C 2985305-T-C **
27839273-G-T 25693126-G-T P1_Y2 **
15658120-A-G 13546240-A-G **
24359561-C-A 22213414-C-A Y80551 **
15076357-C-A 12964447-C-A **
19053424-C-A 16941544-C-A **
7450217-C-T 7582176-C-T IR1_L **
11012315-T-A **
16602633-C-A 14490753-C-A **
18572787-C-A 16460907-C-A **
28570355-C-A 26424208-C-A **
11654931-C-A **
22520786-C-T 20358900-C-T **
19817557-A-G 17705677-A-G P5_Prx **
2853306-C-T 2985265-C-T **
2853397-C-T 2985356-C-T **
10896070-C-A **
3829083-G-A 3961042-G-A **
4548047-T-G 4680006-T-G **
4495657-G-T 4627616-G-T **
4425323-T-C 4557282-T-C **
4425313-A-G 4557272-A-G **
4368687-G-T 4500646-G-T **
4171916-T-C 4303875-T-C **
4162484-A-T 4294443-A-T **
4049613-T-C 4181572-T-C **
4041126-T-A 4173085-T-A **
3912732-ACATTAGAATCCT-A 4044691-ACATTAGAATCCT-A **
3876004-ATT-A 4007963-ATT-A **
3866571-C-A 3998530-C-A **
3859580-G-T 3991539-G-T **
3811957-G-T 3943916-G-T **
2917201-G-T 3049160-G-T **
3650975-G-T 3782934-G-T **
3551198-A-G 3683157-A-G **
3551176-A-G 3683135-A-G **
3522494-T-C 3654453-T-C **
3503890-G-A 3635849-G-A **
3469304-G-T 3601263-G-T **
3409872-C-A 3541831-C-A **
3350246-GA-G 3482205-GA-G **
3342729-A-T 3474688-A-T **
3341426-G-T 3473385-G-T **
13142974-C-T 10632460-C-T **
3011684-A-T 3143643-A-T **
2928250-G-A 3060209-G-A **
23152638-C-A 20990752-C-A **
13457691-C-A 11302015-C-A **
4578598-AGCTGG-A 4710557-AGCTGG-A **
13567113-C-A 11411437-C-A **
15449932-G-T 13338052-G-T **
10865302-A-G **
22252461-T-G 20090575-T-G DYZ19 **
8343999-G-T 8475958-G-T **
14042628-G-T 11921922-G-T **
20108240-AT-A 17996360-AT-A P5_Dst **
17297088-C-A 15185208-C-A **
5214594-C-A 5346553-C-A **
21919384-A-G 19757498-A-G **
2948377-C-A 3080336-C-A **
22774950-C-A 20613064-C-A **
15239572-C-A 13127658-C-A **
7311807-C-A 7443766-C-A **
21464532-G-T 19302646-G-T **
10798216-C-A **
6934714-G-GTT 7066673-G-GTT 15×T**
28168278-T-C 26022131-T-C P1_b4 **
22273154-G-A 20111268-G-A DYZ19 *****
14078043-C-G 11957337-C-G ****
13732240-G-A 11576564-G-A **
9356709-C-G 9519100-C-G **
59020455-A-G 56874308-A-G **
22808763-C-A 20646877-C-A Z45244 **
15394395-C-T 13282515-C-T Y9800 Z9186 **
13266227-C-T 11110551-C-T **
13266218-A-G 11110542-A-G **
22040982-C-A 19879096-C-A **
18429196-C-CAA 16317316-C-CAA P6_Dst 17×A**
10798205-CCTTTT-C **
10798245-C-G **
17127335-C-A 15015455-C-A **
11022024-T-G **
13821419-C-A 11700713-C-A **
22760862-C-A 20598976-C-A **
10828846-T-C **
28581846-C-A 26435699-C-A **
7761233-C-A 7893192-C-A **
15449935-G-T 13338055-G-T **
13899351-C-A 11778645-C-A **
28485754-C-A 26339607-C-A **
18616001-C-A 16504121-C-A **
14313542-G-T 12192836-G-T **
10807080-C-T **
10807078-C-G **
10807055-T-C **
10987840-A-T **
22727348-C-A 20565462-C-A **
14844974-C-A 12733040-C-A **
24458557-G-T 22312410-G-T **
20867917-A-AG 18706031-A-AG P4_Dst **
9732893-C-A 9895284-C-A IR3_Prx **
10911780-C-A **
15346888-C-A 13235007-C-A **
4700863-C-A 4832822-C-A **
14136280-G-A 12015574-G-A **
4970057-G-T 5102016-G-T **
23898947-T-TA 21737061-T-TA **
21323473-C-A 19161587-C-A **
17048026-C-A 14936146-C-A **
14580826-C-A 12469026-C-A **
4578579-T-G 4710538-T-G **
3328914-A-G 3460873-A-G **
4755706-TG-T 4887665-TG-T **
7469326-C-A 7601285-C-A IR1_L **
8216617-C-T 8348576-C-T **
8214982-C-G 8346941-C-G **
8124919-CT-C 8256878-CT-C **
8124915-C-T 8256874-C-T **
4780028-T-C 4911987-T-C **
8072211-TG-T 8204170-TG-T **
7992225-C-A 8124184-C-A **
7868104-C-T 8000063-C-T **
7756212-G-A 7888171-G-A **
7572697-A-T 7704656-A-T **
7467946-A-G 7599905-A-G IR1_L **
8295407-A-G 8427366-A-G **
7434150-T-G 7566109-T-G **
7428405-T-C 7560364-T-C **
7409434-A-G 7541393-A-G **
7313627-A-G 7445586-A-G **
7242045-C-A 7374004-C-A **
7242003-C-G 7373962-C-G **
7153113-C-A 7285072-C-A **
7107072-C-T 7239031-C-T **
7107040-TATATATA-T 7238999-TATATATA-T **
7107022-TATATATATATATATATA-T 7238981-TATATATATATATATATA-T **
8238302-A-G 8370261-A-G **
8376218-C-T 8508177-C-T **
7039139-CA-C 7171098-CA-C **
9859065-C-A 10021456-C-A **
10071290-C-A 10233681-C-A **
10055986-A-T 10218377-A-T **
10032175-A-G 10194566-A-G **
10025034-T-C 10187425-T-C **
10022170-G-A 10184561-G-A **
10012706-C-A 10175097-C-A **
10011873-C-T 10174264-C-T **
10007670-C-A 10170061-C-A **
9940592-T-C 10102983-T-C **
9859133-C-A 10021524-C-A **
9735679-A-T 9898070-A-T IR3_Prx **
8482009-A-T 8613968-A-T **
9441586-A-G 9603977-A-G **
9433913-G-C 9596304-G-C **
9133715-G-A 9296106-G-A **
9030132-T-C 9192523-T-C **
8997224-C-A 9159615-C-A **
8987208-C-A 9149599-C-A **
9117458-A-G **
8850995-C-T 8982954-C-T **
8831174-C-A 8963133-C-A **
8812553-G-A 8944512-G-A **
8699832-T-C 8831791-T-C **
7088477-CA-C 7220436-CA-C **
8124910-G-A 8256869-G-A **
7039117-T-C 7171076-T-C **
5708969-A-G 5840928-A-G **
6430870-A-G 6562829-A-G **
6430847-T-G 6562806-T-G **
6410269-T-C 6542228-T-C **
6401811-C-A 6533770-C-A **
6350749-C-A 6482708-C-A **
6347520-C-A 6479479-C-A **
6308233-A-G 6440192-A-G IR3_Dst **
6249475-T-G 6381434-T-G IR3_Dst **
6249415-A-G 6381374-A-G IR3_Dst **
6224769-A-C 6356728-A-C IR3_Dst **
6000025-T-A 6131984-T-A **
5881389-G-T 6013348-G-T **
5705685-A-C 5837644-A-C **
6712723-A-T 6844682-A-T **
5705652-A-T 5837611-A-T **
5623668-C-A 5755627-C-A **
5556440-C-T 5688399-C-T **
5458781-C-T 5590740-C-T **
5419496-C-A 5551455-C-A **
5409878-A-G 5541837-A-G **
5169066-C-A 5301025-C-A **
5169044-C-A 5301003-C-A **
5115467-C-G 5247426-C-G **
4926109-A-G 5058068-A-G **
4901575-C-A 5033534-C-A **
4898971-G-T 5030930-G-T **
4862704-C-A 4994663-C-A **
6477191-C-A 6609150-C-A **
56883021-G-T **
6931328-C-A 7063287-C-A **
6868950-G-A 7000909-G-A **
7011652-C-A 7143611-C-A **
6825586-A-T 6957545-A-T **
6948497-C-A 7080456-C-A **
6945990-T-C 7077949-T-C **
14900690-G-T 12788757-G-T ***
16519316-CAAA-C,CAAAA 14407436-CAAA-C,CAAAA 15×A***
13940857-AAG-A,AAGAG 11820151-AAG-A,AAGAG 18×AG***
17503401-C-A 15391521-C-A ***
7450386-G-T 7582345-G-T IR1_L ***
15740572-C-T 13628692-C-T ***
15747846-G-T 13635966-G-T ***
16520992-CAA-C,CA 14409112-CAA-C,CA 16×A***
2697281-C-A 2829240-C-A ***
9784695-C-A 9947086-C-A ***
9675356-C-A 9837747-C-A IR3_Prx ***
23762810-TGTG-T 21600924-TGTG-T ***
23833047-A-G 21671161-A-G ***
9024973-C-A 9187364-C-A ***
18759133-A-G 16647253-A-G ***
36477-C-A ***
10916258-G-T ***
5558697-G-A 5690656-G-A ***
23477164-C-A 21315278-C-A ***
7241661-G-T 7373620-G-T ***
23411546-C-T 21249660-C-T ***
23381072-G-C 21219186-G-C ***
13273319-C-A 11117643-C-A ***
4444514-C-T 4576473-C-T ***
22454083-T-A 20292197-T-A DYZ19 ***
10878319-CACTCC-C,CACTCT ***
9993634-C-A 10156025-C-A ***
23714443-A-C 21552557-A-C ***
16286575-C-A 14174695-C-A ***
56826423-C-CATTAA ***
13927843-C-A 11807137-C-A ***
18738139-G-A 16626259-G-A ***
18627788-C-A 16515908-C-A ***
4412271-CA-C 4544230-CA-C ***
22288255-G-T 20126369-G-T DYZ19 ***
7479483-T-C 7611442-T-C IR1_L ***
13572612-G-C 11416936-G-C ***
7142748-A-G 7274707-A-G ***
26183056-C-A 24036909-C-A P1_Y1 ***
22231329-T-G 20069443-T-G DYZ19 ***
18759132-C-T 16647252-C-T ***
22288187-G-C 20126301-G-C DYZ19 ***
22288191-A-T 20126305-A-T DYZ19 ***
22288208-C-T 20126322-C-T DYZ19 ***
22293041-A-T 20131155-A-T DYZ19 ***
22425631-G-T 20263745-G-T DYZ19 ***
22425835-A-G 20263949-A-G DYZ19 ***
14368068-G-A 12247364-G-A ***
24817737-C-T 22671590-C-T P3_b2 ***
23243182-C-T 21081296-C-T ***
21714647-G-T 19552761-G-T ***
23061332-C-A 20899446-C-A ***
22768344-T-A 20606458-T-A ***
16875917-C-A 14764037-C-A ***
11657288-G-A ***
8369493-T-C 8501452-T-C ***
2759441-C-T 2891400-C-T ***
6909475-A-G 7041434-A-G ***
21517980-C-A 19356094-C-A ***
21472175-TAA-T,TA 19310289-TAA-T,TA 14×A***
13489813-T-G 11334137-T-G ***
13847202-TGGACTCAAATGGAATGGAATGGAATGG-T 11726496-TGGACTCAAATGGAATGGAATGGAATGG-T ***
7336817-T-A 7468776-T-A ***
19262796-C-A 17150916-C-A ***
19127321-C-G 17015441-C-G ***
16932684-C-A 14820804-C-A ***
6886957-T-C 7018916-T-C ***
13881009-A-G 11760303-A-G ***
13893788-C-A 11773082-C-A ***
21128176-C-A 18966290-C-A ***
19369282-C-A 17257402-C-A ***
21090823-C-T 18928937-C-T ***
13845334-C-A 11724628-C-A ***
17388448-C-A 15276568-C-A ***
7450375-A-G 7582334-A-G IR1_L ***
14018147-C-T 11897441-C-T ***
8398836-C-A 8530795-C-A ***
9798091-T-G 9960482-T-G ***
14050758-G-T 11930052-G-T ***
13465485-A-T 11309809-A-T ***
13310220-A-G 11154544-A-G ***
15477782-C-A 13365902-C-A ***
10661325-TGCATC-T,TCCATT ***
13450104-CTCCACTCCACCCCATCCCATCCCATTCTATTCCAT-C,CTCCACTCTACTCCTTTCCTTTCCATTCCATTCCAT 11294428-CTCCACTCCACCCCATCCCATCCCATTCTATTCCAT-C,CTCCACTCTACTCCTTTCCTTTCCATTCCATTCCAT ***
13465446-A-G 11309770-A-G ***
13465460-A-G 11309784-A-G ***
22874522-C-A 20712636-C-A ***
22869544-C-A 20707658-C-A ***
22855276-G-T 20693390-G-T ***
15747346-C-A 13635466-C-A ***
13465463-C-T 11309787-C-T ***
10661360-T-A ***
21663248-G-A 19501362-G-A ***
13466552-T-C 11310876-T-C ***
7179781-G-C 7311740-G-C ***
6807702-CTT-C 6939661-CTT-C 12×T***
8881059-CAA-C,CA 9013018-CAA-C,CA 14×A***
8730847-A-G 8862806-A-G ***
13253988-T-C 11098312-T-C ***
15011170-G-T 12899255-G-T ***
21951849-C-A 19789963-C-A ***
21950237-A-T 19788351-A-T ***
11643043-GGAATGGAATCGAATA-G ***
8536074-T-C 8668033-T-C ***
13478406-G-A 11322730-G-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

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