Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > Z251/S470 > FGC13899 > ~22449881-G-T > ~25042060-A-G > FGC18235 > FGC18262 > FGC18234

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFGC
16622795-C-T 14510915-C-T FGC18263 Y+
13127707-T-G 10617193-T-G FGC18252 +
5512645-T-C 5644604-T-C FGC18242 +
5898563-G-A 6030522-G-A FGC18243 +
5109892-C-T 5241851-C-T FGC18238 +
16073999-T-C 13962119-T-C FGC18261 Y+
15081608-G-A 12969698-G-A FGC18257 Y+
6579974-C-T 6711933-C-T FGC18244 +
6623663-A-T 6755622-A-T FGC18245 Y+
16688044-T-C 14576164-T-C FGC18264 Y+
17065843-G-A 14953963-G-A FGC18266 Y+
19433430-TG-T 17321550-TG-T +
3106208-G-A 3238167-G-A FGC18236 +
23212982-C-T 21051096-C-T FGC18231 Y+
4080658-G-C 4212617-G-C FGC18237 +
28575856-T-C 26429709-T-C FGC18275 +
5146829-T-G 5278788-T-G FGC18239 *
19560522-A-C 17448642-A-C FGC18273 Y*
21524511-TAA-T 19362625-TAA-T *
5511383-A-T 5643342-A-T FGC18241 *
19029948-G-A 16918068-G-A FGC18270 Y*
9472773-G-A 9635164-G-A FGC18250 *
26828317-C-T 24682170-C-T ZS8005 P1_g2 **
21054500-T-TTG 18892614-T-TTG **
26828312-T-A 24682165-T-A P1_g2 **
22218668-C-A 20056782-C-A DYZ19 **
22218662-T-G 20056776-T-G DYZ19 **
22218681-G-T 20056795-G-T DYZ19 **
22218972-T-C 20057086-T-C DYZ19 **
22218735-A-G 20056849-A-G DYZ19 **
4150593-G-A 4282552-G-A **
28553274-G-GA 26407127-G-GA 11×A**
20842279-T-C 18680393-T-C P4_Dst **
25021318-C-T 22875171-C-T g1 **
13292702-C-T 11137026-C-T **
28576567-G-A 26430420-G-A **
22217918-T-C 20056032-T-C DYZ19 **
20824744-T-TAAATA 18662858-T-TAAATA P4_Gap 5×AAATA**
6091824-CCAAAATAGA-C 6223783-CCAAAATAGA-C **
5251662-A-AAT 5383621-A-AAT **
13524204-T-A 11368528-T-A **
14787792-A-G 12675862-A-G **
18297876-C-CTTTTTT 16185996-C-CTTTTTT P6_Prx 31×T**
58843144-T-C 56747727-A-G ***
22218423-A-T 20056537-A-T DYZ19 ***
58840403-A-T 56750468-T-A ***
58845723-C-T 56745148-G-A ***
58873002-C-T 56717869-G-A ***
58872956-C-G 56717915-G-C ***
58868101-G-T 56722770-C-A ***
58865732-G-T 56725139-C-A ***
58865730-T-G 56725141-A-C ***
58865729-C-G 56725142-G-C ***
58845740-T-A 56745131-A-T ***
58844971-G-C 56745900-C-G ***
58843147-C-T 56747724-G-A ***
58844970-T-C 56745901-A-G ***
58844950-G-C 56745921-C-G ***
58844856-G-C 56746015-C-G ***
58843644-C-T 56747227-G-A ***
58843220-C-A 56747651-G-T ***
58843217-T-A 56747654-A-T ***
58843161-A-C 56747710-T-G ***
58841091-T-C 56749780-A-G ***
27637583-A-G 25491436-A-G P1_Y2 ***
58840396-C-T 56750475-G-A ***
24659685-C-T 22513538-C-T P3_b2 ***
26167753-T-G 24021606-T-G P1_Y1 ***
25907836-T-G 23761689-T-G P1_Y1 ***
25907768-A-T 23761621-A-T P1_Y1 ***
25907738-T-A 23761591-T-A P1_Y1 ***
25531113-G-A 23384966-G-A P1_gr1 ***
25531092-G-A 23384945-G-A P1_gr1 ***
25239995-C-T 23093848-C-T P2_r1 ***
24614357-G-A 22468210-G-A P3_t2 ***
26179309-C-T 24033162-C-T P1_Y1 ***
24082804-C-T 21936657-C-T P3_b1 ***
24082797-A-G 21936650-A-G P3_b1 ***
22504823-G-A 20342937-G-A DYZ19 ***
22504786-G-A 20342900-G-A DYZ19 ***
22502691-C-G 20340805-C-G DYZ19 ***
22502688-G-A 20340802-G-A DYZ19 ***
22501802-G-T 20339916-G-T DYZ19 ***
22491435-G-T 20329549-G-T DYZ19 ***
26170667-A-T 24024520-A-T P1_Y1 ***
26188632-G-A 24042485-G-A P1_Y1 ***
58840387-T-A 56750484-A-T ***
27532543-T-A 25386396-T-A P1_Y2 ***
58839723-G-C 56751148-C-G ***
58821155-C-T 56769716-G-A ***
28361901-G-A 26215754-G-A P1_gr2 ***
27564850-G-C 25418703-G-C P1_Y2 9×T***
27564849-A-T 25418702-A-T P1_Y2 ***
27532554-A-T 25386407-A-T P1_Y2 ***
27532553-G-T 25386406-G-T P1_Y2 ***
27532547-G-A 25386400-G-A P1_Y2 ***
27532502-G-A 25386355-G-A P1_Y2 ***
26507919-A-T 24361772-A-T P1_Y1 ***
27532501-T-A 25386354-T-A P1_Y2 ***
27532500-T-A 25386353-T-A P1_Y2 ***
27532498-T-A 25386351-T-A P1_Y2 ***
27532492-G-A 25386345-G-A P1_Y2 ***
27517469-A-G 25371322-A-G P1_Y2 ***
27506314-G-A 25360167-G-A FGC44779 P1_Y2 ***
27484206-C-A 25338059-C-A P1_Y2 ***
27402980-T-A 25256833-T-A P1_g3 ***
58876980-T-A 56713891-A-T ***
3587292-C-CTTTTT 3719251-C-CTTTTT 22×T***
58876988-C-T 56713883-G-A ***
22218169-CGGAC-AGGAG 20056283-CGGAC-AGGAG DYZ19 ***
22222488-TGA-AGG 20060602-TGA-AGG DYZ19 ***
22222431-GGTC-CGTT 20060545-GGTC-CGTT DYZ19 ***
22219821-CA-GG 20057935-CA-GG DYZ19 ***
22218828-CT-TC 20056942-CT-TC DYZ19 ***
22218780-ATTT-CTTC 20056894-ATTT-CTTC DYZ19 ***
22217899-ATTT-TTTG 20056013-ATTT-TTTG DYZ19 ***
22268301-CC-GT 20106415-CC-GT DYZ19 ***
22217874-AA-GC 20055988-AA-GC DYZ19 ***
22217851-AA-TG 20055965-AA-TG DYZ19 ***
20025476-T-TCCCCCCCC 17913596-T-TCCCCCCCC P5_Prx ***
19937284-G-GCCCCCCCC 17825404-G-GCCCCCCCC P5_Prx 13×C***
19265858-TAG-T 17153978-TAG-T ***
19187385-A-ATTTTTT 17075505-A-ATTTTTT 28×T***
22235011-CA-C 20073125-CA-C DYZ19 ***
19071530-ACA-TTG 16959650-ACA-TTG ***
27398510-C-CAAAAAAA 25252363-C-CAAAAAAA P1_g3 23×A***
59019511-AACAC-A 56873364-AACAC-A 20×AC***
59007432-C-CTTTATT 56861285-C-CTTTATT 18×T***
58839730-CT-GC 56751140-AG-GC ***
28491337-A-AAAACCCCCCC 26345190-A-AAAACCCCCCC ***
28253491-C-CAAAAAAA 26107344-C-CAAAAAAA P1_b4 32×A***
27862567-A-AGAGG 25716420-A-AGAGG P1_Y2 ***
27564849-AG-TC 25418702-AG-TC P1_Y2 ***
26902321-G-AAA 24756174-G-AAA P1_r3 ***
22297112-AGTTTG-TTTTT 20135226-AGTTTG-TTTTT DYZ19 ***
24447139-G-GAAAA 22300992-G-GAAAA ***
24408991-ACCCCC-A 22262844-ACCCCC-A 14×C***
24388091-T-TAG 22241944-T-TAG ***
22739716-C-CAAAAA 20577830-C-CAAAAA 24×A***
22502085-AGT-TGA 20340199-AGT-TGA DYZ19 ***
22366009-GTTG-TTTT 20204123-GTTG-TTTT DYZ19 ***
22309574-AC-TT 20147688-AC-TT DYZ19 ***
18688498-T-TAAA 16576618-T-TAAA ***
58876993-T-C 56713878-A-G ***
3174374-C-CTTT 3306333-C-CTTT 18×T***
10016562-AGAGC-GGAGT 10178953-AGAGC-GGAGT ***
9939268-TGGCA-CGGTG 10101659-TGGCA-CGGTG ***
9843184-C-CAAAAAAA 10005575-C-CAAAAAAA 15×A***
8439220-G-GTTTTT 8571179-G-GTTTTT 14×T***
6493140-C-CA 6625099-C-CA 10×A***
22491012-G-A 20329126-G-A DYZ19 ***
3558263-G-AA 3690222-G-AA ***
10090710-AG-GT 10253101-AG-GT ***
8085516-C-CT 8217475-C-CT 19×T***
9993273-TT-GC 10155664-TT-GC ***
58913273-T-C 56677598-A-G ***
58909169-A-C 56681702-T-G ***
58904103-A-G 56686768-T-C ***
58893174-A-T 56697697-T-A ***
58889935-C-G 56700936-G-C ***
58880095-A-T 56710776-T-A ***
10052666-CTC-ATT 10215057-CTC-ATT ***
10090738-AA-GC 10253129-AA-GC ***
18447621-G-GTTTTTTTTTTT 16335741-G-GTTTTTTTTTTT P6_Dst 18×T***
17951324-TGC-T 15839444-TGC-T ***
14491319-AGT-CCA ***
13832496-AAAGAT-A 11711790-AAAGAT-A ***
13832483-GATCAT-G 11711777-GATCAT-G ***
13492973-TCCTG-CCTTA 11337297-TCCTG-CCTTA ***
13489604-CCC-ACT 11333928-CCC-ACT ***
13489598-CC-AA 11333922-CC-AA ***
13489528-CCG-ACA 11333852-CCG-ACA ***
13120501-TTTCAC-GTTTAA 10609987-TTTCAC-GTTTAA ***
13483214-GATACT-AATATG 11327538-GATACT-AATATG ***
13468707-GTAT-ATAA 11313031-GTAT-ATAA ***
13330002-T-TTTTTGG 11174326-T-TTTTTGG ***
13263697-CGTC-TGTT 11108021-CGTC-TGTT ***
13140115-CATTAA-C 10629601-CATTAA-C ***
22491418-C-A 20329532-C-A DYZ19 ***
22329996-C-A 20168110-C-A DYZ19 ***
22488364-A-T 20326478-A-T DYZ19 ***
58848662-T-C 56742209-A-G ***
3313785-A-T 3445744-A-T ***
13464112-C-G 11308436-C-G ***
13120504-C-T 10609990-C-T ***
13472353-C-T 11316677-C-T ***
13468615-T-C 11312939-T-C ***
4446273-A-G 4578232-A-G ***
13120517-A-T 10610003-A-T ***
13120506-C-A 10609992-C-A ***
3902184-A-T 4034143-A-T ***
22219779-C-T 20057893-C-T DYZ19 ***
13387031-T-C 11231355-T-C ***
22219792-T-C 20057906-T-C DYZ19 ***
22220455-G-T 20058569-G-T DYZ19 ***
25841456-A-C 23695309-A-C P1_b3 ***
22344833-T-G 20182947-T-G DYZ19 ***
13399371-C-A 11243695-C-A FGC41965 ***
3313796-G-A 3445755-G-A ***
3902195-A-T 4034154-A-T ***
22292434-C-T 20130548-C-T DYZ19 ***
7483015-C-T 7614974-C-T IR1_L ***
9608736-G-A 9771127-G-A IR3_Prx ***
9608729-C-T 9771120-C-T IR3_Prx ***
9303952-G-A 9466343-G-A ***
9303948-T-A 9466339-T-A ***
9303941-G-A 9466332-G-A ***
9183285-C-G 9345676-C-G ***
7643581-G-A 7775540-G-A ***
6300211-G-A 6432170-G-A IR3_Dst ***
3902205-A-T 4034164-A-T ***
6300210-T-G 6432169-T-G IR3_Dst ***
6300193-A-G 6432152-A-G IR3_Dst 9×T***
6123526-A-C 6255485-A-C ***
5872110-G-A 6004069-G-A ***
4868533-C-T 5000492-C-T ***
4848353-T-A 4980312-T-A ***
4445504-C-A 4577463-C-A ***
13479833-T-A 11324157-T-A ***
26499796-A-G 24353649-A-G P1_Y1 ***
9930421-C-T 10092812-C-T ***
58843145-G-C 56747726-C-G ***
22366791-C-T 20204905-C-T DYZ19 ***
22226522-T-A 20064636-T-A DYZ19 ***
7483020-G-T 7614979-G-T IR1_L ***
7483017-A-T 7614976-A-T IR1_L ***
58877000-A-C 56713871-T-G ***
58876985-G-C 56713886-C-G ***
58843212-G-C 56747659-C-G ***
27423550-T-A 25277403-T-A P1_g3 ***
58866449-A-G 56724422-T-C ***
22252918-T-A 20091032-T-A DYZ19 ***
22252915-T-A 20091029-T-A DYZ19 ***
22248516-A-C 20086630-A-C DYZ19 ***
15336019-C-CAAAAAAA 13224137-C-CAAAAAAA 30×A***
22236408-A-G 20074522-A-G DYZ19 ***
22241565-T-C 20079679-T-C DYZ19 ***
22219151-A-G 20057265-A-G DYZ19 ***
58841085-A-C 56749786-T-G ***
13414797-A-ATCTTT 11259121-A-ATCTTT 20×T***
13733946-G-A 11578270-G-A ***
22329931-A-C 20168045-A-C DYZ19 ***
13740758-GAAGGAAATCA-G 11585082-GAAGGAAATCA-G ***
27637566-C-G 25491419-C-G P1_Y2 ***
22326778-CC-TA 20164892-CC-TA DYZ19 ***
58869751-G-C 56721120-C-G ***
14613459-C-CTTTTTT 12501657-C-CTTTTTT 26×T***
13120472-TG-AC 10609958-TG-AC ***
22309318-G-C 20147432-G-C DYZ19 ***
22505075-CTGA-GTGT 20343189-CTGA-GTGT DYZ19 ***
13120501-T-G 10609987-T-G ***
13120473-G-C 10609959-G-C ***
13120472-T-A 10609958-T-A ***
14491319-A-C 12379516-C-. ***
13120533-T-A 10610019-T-A ***
13120534-G-A 10610020-G-A ***
13120524-T-A 10610010-T-A ***
9608739-G-T 9771130-G-T IR3_Prx ***
9939732-A-G 10102123-A-G ***
22481826-G-T 20319940-G-T DYZ19 ***
22273733-G-C 20111847-G-C DYZ19 ***
22309312-C-A 20147426-C-A DYZ19 ***
22308858-A-T 20146972-A-T DYZ19 ***
22297487-A-T 20135601-A-T DYZ19 ***
22292687-A-C 20130801-A-C DYZ19 ***
22292441-T-C 20130555-T-C DYZ19 ***
22282027-A-T 20120141-A-T DYZ19 ***
22281999-C-A 20120113-C-A DYZ19 ***
22273627-G-A 20111741-G-A DYZ19 ***
22309450-T-A 20147564-T-A DYZ19 ***
22234995-A-T 20073109-A-T DYZ19 ***
22234968-G-C 20073082-G-C DYZ19 ***
22218793-A-C 20056907-A-C DYZ19 ***
21012360-A-T 18850474-A-T P4_Dst ***
20574543-T-C 18412657-T-C P5_Dst ***
20535886-C-T 18374000-C-T P5_Dst ***
20362831-C-A 18200945-C-A P5_Dst ***
22309428-G-T 20147542-G-T DYZ19 ***
22309590-C-T 20147704-C-T BY23146 DYZ19 ***
20255174-A-T 18093288-A-T P5_Dst ***
22367094-A-G 20205208-A-G DYZ19 ***
22456650-T-A 20294764-T-A DYZ19 ***
22421709-T-G 20259823-T-G DYZ19 ***
22421460-A-T 20259574-A-T DYZ19 ***
22367994-C-G 20206108-C-G DYZ19 ***
22367199-T-G 20205313-T-G DYZ19 ***
22367198-C-A 20205312-C-A DYZ19 ***
22367102-T-G 20205216-T-G DYZ19 ***
22360558-G-C 20198672-G-C DYZ19 ***
22329952-G-T 20168066-G-T DYZ19 ***
22355178-C-G 20193292-C-G DYZ19 ***
22353367-G-T 20191481-G-T DYZ19 ***
22353360-G-T 20191474-G-T DYZ19 ***
22353340-A-G 20191454-A-G DYZ19 ***
22344161-C-A 20182275-C-A DYZ19 ***
58912426-C-T 56678445-G-A 10×CCATT***
22329959-A-G 20168073-A-G DYZ19 ***
20255189-G-T 18093303-G-T P5_Dst ***
20103561-C-T 17991681-C-T P5_Dst ***
9991638-T-C 10154029-T-C ***
13120358-G-C 10609844-G-C ***
13481514-C-A 11325838-C-A ***
13387040-G-A 11231364-G-A ***
13256634-A-T 11100958-A-T ***
13255894-A-T 11100218-A-T ***
13132853-A-T 10622339-A-T ***
13132832-G-A 10622318-G-A ***
13120379-G-T 10609865-G-T ***
13120350-C-G 10609836-C-G ***
13492973-T-C 11337297-T-C ***
13120332-T-C 10609818-T-C ***
13120329-A-T 10609815-A-T ***
13110038-C-A 10599524-C-A ***
13109979-A-G 10599465-A-G ***
10090687-C-G 10253078-C-G ***
10052645-G-C 10215036-G-C ***
10052639-C-A 10215030-C-A ***
13489557-T-A 11333881-T-A ***
13492975-C-T 11337299-C-T ***
19913438-A-C 17801558-A-C P5_Prx ***
19071530-A-T 16959650-A-T ***
19894756-G-A 17782876-G-A P5_Prx ***
19677261-C-T 17565381-C-T P5_Prx ***
19071574-A-T 16959694-A-T ***
19071569-A-G 16959689-A-G ***
19071550-A-G 16959670-A-G Y103539 ***
19071546-G-A 16959666-G-A ***
19071532-A-G 16959652-A-G ***
16119176-G-T 14007296-G-T P8_Prx ***
13492977-G-A 11337301-G-A ***
16119170-G-T 14007290-G-T P8_Prx ***
14435605-C-G 12314878-C-G ***
13733937-G-T 11578261-G-T ***
13728272-C-A 11572596-C-A ***
13725158-C-T 11569482-C-T ***
13722532-T-A 11566856-T-A ***
13535657-A-G 11379981-A-G ***
59024014-AAAAAA-G 56877867-AAAAAA-G ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

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