Tree Position

R-P312/S116 > Z40481 > ZZ11 > U152/S28 > L2/S139 > Z41150 > DF90 > FGC14641 > ~22237861-G-A > FGC29470 > 2687788-G-A > 7725113-A-T

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFGC
ZVU4C
Manual
Edits
6076429-G-A 6208388-G-A FGC59697 +
3468201-T-C 3600160-T-C FGC59690 +
3393394-T-C 3525353-T-C FGC59689 +
16094311-A-C 13982431-A-C FGC59717 Y+
4081882-C-G 4213841-C-G FGC59692 +
19055504-G-A 16943624-G-A FGC59723 YY+
19756467-G-C 17644587-G-C FGC59727 P5_Prx +
19746110-T-C 17634230-T-C FGC59726 P5_Prx +
4411660-A-G 4543619-A-G FGC59693 +
17649773-G-A 15537893-G-A FGC59720 YY+
7573034-G-A 7704993-G-A FGC59701 Y+
13635127-G-A 11479451-G-A FGC59710 +
4501294-G-T 4633253-G-T FGC59694 +
13337137-C-G 11181461-C-G FGC59709 +
7138142-C-T 7270101-C-T FGC59700 YY+
17496915-T-C 15385035-T-C FGC59719 YY+
3261789-AG-A 3393748-AG-A +
5260178-G-A 5392137-G-A FGC59695 +
5988114-T-A 6120073-T-A FGC59696 +
3495612-T-C 3627571-T-C FGC59691 +
4555558-A-AAAT 4687517-A-AAAT 9×AAT**
25429809-T-C 23283662-T-C P2_r2 **
16997605-C-T 14885725-C-T **
16994614-A-G 14882734-A-G **
5937242-C-CTATA 6069201-C-CTATA 18×TA**
17127321-T-G 15015441-T-G **
17127322-C-A 15015442-C-A **
17127327-A-T 15015447-A-T **
17162751-G-A 15050871-G-A **
25059417-G-A 22913270-G-A g1 **
22510787-C-T 20348901-C-T DYZ19 **
17428802-G-A 15316922-G-A **
17455080-C-T 15343200-C-T **
17523717-T-C 15411837-T-C **
17641587-T-A 15529707-T-A **
3932616-TTACTC-T 4064575-TTACTC-T **
4807506-AT-A 4939465-AT-A 10×T**
16994603-C-T 14882723-C-T **
23029009-G-T 20867123-G-T **
15187474-C-T 13075560-C-T **
58876678-T-A 56714193-A-T **
15672130-G-T 13560250-G-T **
4914583-G-T 5046542-G-T **
15836406-G-A 13724526-G-A **
14919323-G-T 12807388-G-T **
58836249-G-A 56754622-C-T **
4428910-A-G 4560869-A-G **
4292344-C-T 4424303-C-T **
17127317-G-A 15015437-G-A **
4290917-A-T 4422876-A-T **
4219607-G-A 4351566-G-A **
3999124-G-C 4131083-G-C **
16664957-C-T 14553077-C-T **
3043301-G-T 3175260-G-T **
13469119-G-A 11313443-G-A **
13844028-T-A 11723322-T-A **
3131151-CAGATAGAT-C 3263110-CAGATAGAT-C 12×AGAT**
16994629-A-G 14882749-A-G **
7897547-A-C 8029506-A-C **
18971568-G-A 16859688-G-A **
22489825-G-A 20327939-G-A DYZ19 **
13466450-G-C 11310774-G-C **
22300785-TC-T 20138899-TC-T DYZ19 **
17728328-A-G 15616448-A-G **
59023115-C-T 56876968-C-T **
13728907-T-C 11573231-T-C **
13728875-C-T 11573199-C-T **
22666130-TG-T 20504244-TG-T **
22258752-G-A 20096866-G-A DYZ19 **
13261085-G-A 11105409-G-A **
22430289-A-T 20268403-A-T DYZ19 **
7774787-A-T 7906746-A-T PF4514 **
58880373-GCATTC-G 56710473-CAATGG-C 4×CATTC**
9221712-T-C 9384103-T-C **
7717737-C-CTTCCTTCCTTCT 7849696-C-CTTCCTTCCTTCT 13×TTCT**
13558862-C-T 11403186-C-T **
21535803-T-C 19373917-T-C **
21914572-C-A 19752686-C-A **
26444525-A-T 24298378-A-T P1_Y1 **
22345813-C-T 20183927-C-T DYZ19 **
27335543-G-A 25189396-G-A P1_g3 **
22422454-T-A 20260568-T-A DYZ19 **
22422526-C-A 20260640-C-A DYZ19 **
8323317-C-T 8455276-C-T **
8323321-G-T 8455280-G-T **
22447658-G-A 20285772-G-A DYZ19 **
18014886-A-G 15903006-A-G P7_Dst **
22447643-G-A 20285757-G-A DYZ19 **
9032685-G-A 9195076-G-A **
8323356-T-G 8455315-T-G **
22430287-C-T 20268401-C-T DYZ19 **
18463089-A-C 16351209-A-C P6_Dst **
25207592-G-A 23061445-G-A P2_r1 ***
25724172-A-C 23578025-A-C P1_b3 ***
25624568-A-C 23478421-A-C P1_b3 ***
26241928-G-C 24095781-G-C P1_Y1 ***
25147103-T-G 23000956-T-G g1 ***
26275711-G-T 24129564-G-T P1_Y1 ***
24768073-A-T 22621926-A-T P3_b2 ***
25312570-C-A 23166423-C-A P2_r1 ***
25899571-C-A 23753424-C-A P1_Y1 ***
24666654-T-A 22520507-T-A P3_b2 ***
24539762-C-A 22393615-C-A P3_t2 ***
24373780-T-A 22227633-T-A ***
26298947-C-T 24152800-C-T P1_Y1 ***
25312553-G-C 23166406-G-C P2_r1 ***
24209914-C-A 22063767-C-A P3_b1 ***
25241383-A-C 23095236-A-C P2_r1 ***
24174048-G-T 22027901-G-T P3_b1 ***
25728468-C-A 23582321-C-A P1_b3 ***
25944134-G-T 23797987-G-T P1_Y1 ***
25964728-T-C 23818581-T-C P1_Y1 ***
25038224-G-T 22892077-G-T g1 ***
25967628-C-T 23821481-C-T P1_Y1 ***
25930276-T-C 23784129-T-C P1_Y1 ***
25027072-A-G 22880925-A-G g1 ***
24998101-T-G 22851954-T-G g1 ***
25508770-C-T 23362623-C-T P1_gr1 9×T***
26025463-G-T 23879316-G-T P1_Y1 ***
25472069-G-C 23325922-G-C P2_r2 ***
25379449-C-T 23233302-C-T P2_r2 ***
25131751-A-T 22985604-A-T g1 ***
24771097-G-T 22624950-G-T P3_b2 ***
24997954-G-T 22851807-G-T g1 ***
26066421-A-T 23920274-A-T P1_Y1 ***
24969357-C-T 22823210-C-T g1 ***
26066429-G-T 23920282-G-T P1_Y1 ***
25572713-C-A 23426566-C-A P1_gr1 ***
26110103-T-A 23963956-T-A P1_Y1 ***
24941342-T-C 22795195-T-C g1 ***
26122478-T-C 23976331-T-C P1_Y1 ***
26202079-A-T 24055932-A-T P1_Y1 ***
22267228-A-C 20105342-A-C DYZ19 ***
24107416-C-A 21961269-C-A P3_b1 ***
22267233-C-A 20105347-C-A DYZ19 ***
22427184-A-C 20265298-A-C DYZ19 ***
22419864-A-G 20257978-A-G DYZ19 ***
22334708-T-G 20172822-T-G DYZ19 ***
22328893-A-G 20167007-A-G DYZ19 ***
22327444-A-G 20165558-A-G DYZ19 ***
22320616-T-C 20158730-T-C DYZ19 ***
22306454-A-C 20144568-A-C DYZ19 ***
22281887-T-A 20120001-T-A DYZ19 ***
22281875-A-C 20119989-A-C DYZ19 ***
22267587-T-G 20105701-T-G DYZ19 ***
22267249-A-T 20105363-A-T DYZ19 ***
22267245-T-G 20105359-T-G DYZ19 ***
22267229-T-C 20105343-T-C DYZ19 ***
22430913-A-T 20269027-A-T DYZ19 ***
22267224-G-A 20105338-G-A DYZ19 ***
22266853-A-G 20104967-A-G BY28068 DYZ19 ***
22251096-T-C 20089210-T-C DYZ19 ***
22251091-T-A 20089205-T-A DYZ19 ***
22226263-T-C 20064377-T-C DYZ19 ***
22219151-A-C 20057265-A-C DYZ19 ***
22219104-A-G 20057218-A-G DYZ19 ***
22219100-A-G 20057214-A-G DYZ19 ***
22211902-C-T 20050016-C-T ***
22210456-T-A 20048570-T-A ***
22013454-T-G 19851568-T-G ***
21846790-G-T 19684904-G-T ***
22427194-C-T 20265308-C-T DYZ19 ***
22437990-G-T 20276104-G-T DYZ19 ***
24050145-C-T 21903998-C-T ***
22518307-G-C 20356421-G-C ***
24014272-G-T 21868125-G-T ***
23441884-G-A 21279998-G-A ***
23440713-G-A 21278827-G-A ***
23229720-T-A 21067834-T-A ***
23182153-G-T 21020267-G-T ***
23038393-A-G 20876507-A-G ***
23038110-G-T 20876224-G-T ***
22882388-A-G 20720502-A-G ***
22882325-T-G 20720439-T-G ***
22757051-A-C 20595165-A-C ***
22637694-A-C 20475808-A-C ***
22537334-T-A 20375448-T-A ***
22512436-A-T 20350550-A-T DYZ19 ***
22446717-A-G 20284831-A-G DYZ19 ***
22511189-G-T 20349303-G-T DYZ19 ***
22511170-T-A 20349284-T-A DYZ19 ***
22509801-G-A 20347915-G-A DYZ19 ***
22509284-A-G 20347398-A-G DYZ19 ***
22509283-G-T 20347397-G-T DYZ19 ***
22508767-T-C 20346881-T-C DYZ19 ***
22508621-C-T 20346735-C-T DYZ19 ***
22489929-G-A 20328043-G-A DYZ19 ***
22486969-T-G 20325083-T-G DYZ19 ***
22469971-A-G 20308085-A-G DYZ19 ***
22463056-G-T 20301170-G-T DYZ19 ***
22460900-A-G 20299014-A-G DYZ19 ***
26379402-T-A 24233255-T-A P1_Y1 ***
27686047-C-A 25539900-C-A P1_Y2 ***
26405141-C-T 24258994-C-T P1_Y1 ***
13867970-CT-TG 11747264-CT-TG ***
13599390-G-GAA 11443714-G-GAA ***
13723142-AGAATG-A 11567466-AGAATG-A ***
13730278-TGGAGTG-AGGACTC 11574602-TGGAGTG-AGGACTC ***
13746330-AAATGG-A 11590654-AAATGG-A ***
13746369-CA-GG 11590693-CA-GG ***
13746445-AAA-GAG 11590769-AAA-GAG ***
14418138-CTGTATATATATATGTATATATATA-C 12297435-CTG-C ***
13599349-GAA-G 11443673-GAA-G ***
14646834-A-AC 12534898-A-AC ***
14866153-G-GTGTT 12754223-G-GTGTT ***
14866158-T-TGTGC 12754228-T-TGTGC ***
15098563-GCC-ACT 12986651-GCC-ACT ***
15098578-CA-C 12986666-CA-C ***
15098589-GTGTGTT-ATGTTTG 12986677-GTGTGTT-ATGTTTG ***
13599374-GATG-AATGAGATAA 11443698-GATG-AATGAGATAA ***
13489162-CAACC-AAACA 11333486-CAACC-AAACA ***
16994647-TTC-T 14882767-TTC-T ***
9501805-AAACGAAT-CAACAAAC 9664196-AAACGAAT-CAACAAAC ***
5308778-C-CTATATATATATATA 5440737-C-CTATATATATATATA 11×TA***
5399016-ATTTTTTT-A 5530975-ATTTTTTT-A 18×T***
7712345-TAAA-T 7844304-TAAA-T ***
8323317-CATTG-TATTT 8455276-CATTG-TATTT ***
8407603-G-GC 8539562-G-GC ***
9030408-AGAAAGGAAAGGAAAGGAAAG-A 9192799-AGAAAGGAAAGGAAAGGAAAG-A 17×GAAAG***
13242396-TATGCACCAC-CATG 11086720-TATGCACCAC-CATG ***
13474379-GGGTG-TGGTA 11318703-GGGTG-TGGTA ***
13257285-ATATATT-A 11101609-ATATATT-A ***
13381431-CATC-TATT 11225755-CATC-TATT ***
13448818-GCA-TCT 11293142-GCA-TCT ***
13450301-TTGCATTCCATTGCATTTA-CTGCATTCCTTTCCATTTC 11294625-TTGCATTCCATTGCATTTA-CTGCATTCCTTTCCATTTC ***
13453836-TC-CA 11298160-TC-CA ***
13474298-GT-AC 11318622-GT-AC ***
15263360-A-ATTTAAG 13151450-A-ATTTAAG ***
17127317-GACATC-AACAGA 15015437-GACATC-AACAGA ***
4067508-CTT-C 4199467-CTT-C 29×T***
58972950-GT-AG 56826803-GT-AG ***
24446853-ATAT-A 22300706-ATAT-A ***
26433572-CT-C 24287425-CT-C P1_Y1 19×T***
28503399-CAAAAA-C 26357252-CAAAAA-C 19×A***
28628428-A-ATT 26482281-A-ATT ***
58880268-CCTT-TCAC 56710600-AAGG-GTGA ***
58972122-GATTGCAT-CAGTCCAA 56825975-GATTGCAT-CAGTCCAA ***
58972965-TT-AC 56826818-TT-AC ***
22509283-GA-TG 20347397-GA-TG DYZ19 ***
58972975-A-ACTGCG 56826828-A-ACTGCG ***
58972984-CAT-TTC 56826837-CAT-TTC ***
58975838-TG-CA 56829691-TG-CA ***
58977358-T-TTCCAC 56831211-T-TTCCAC ***
58982534-ACA-GCT 56836387-ACA-GCT ***
58982545-CATCC-TATAT 56836398-CATCC-TATAT ***
23732232-CAAAA-C 21570346-CAAAA-C 17×A***
22508756-TTTCG-GTTCA 20346870-TTTCG-GTTCA DYZ19 ***
17219031-C-CT 15107151-C-CT ***
19438450-A-AAAGC 17326570-A-AAAGC ***
17442074-G-GA 15330194-G-GA ***
17459485-CAAAAAAAAAAAAAA-C 15347605-CAAAAAAAAAAAAAA-C 25×A***
18346336-A-AT 16234456-A-AT P6_Prx ***
19041654-GTCT-CTCA 16929774-GTCT-CTCA ***
19411972-GAA-AAG 17300092-GAA-AAG ***
19434611-CA-C 17322731-CA-C ***
19438453-G-GAAAA 17326573-G-GAAAA ***
22446668-GA-TT 20284782-GA-TT DYZ19 ***
21104606-TGAGAGA-T 18942720-TGAGAGA-T 11×GA***
21464209-AAAG-A 19302323-AAAG-A ***
21809834-TTA-T 19647948-TTA-T ***
22366529-CAGT-TAGG 20204643-CAGT-TAGG DYZ19 ***
22430287-CGA-TGT 20268401-CGA-TGT DYZ19 ***
22437990-GGT-TGC 20276104-GGT-TGC DYZ19 ***
4650472-GATATATAT-G 4782431-GATATATAT-G 24×AT***
3949406-CAAA-C 4081365-CAAA-C 20×A***
26418153-A-T 24272006-A-T P1_Y1 ***
28034174-G-T 25888027-G-T P1_Y2 ***
27503985-A-T 25357838-A-T P1_Y2 ***
27571251-G-T 25425104-G-T P1_Y2 ***
21829869-C-A 19667983-C-A ***
27921043-G-A 25774896-G-A P1_Y2 ***
27928673-G-T 25782526-G-T P1_Y2 ***
28021998-G-T 25875851-G-T P1_Y2 ***
28089672-T-G 25943525-T-G P1_Y2 ***
27432285-A-T 25286138-A-T P1_g3 ***
28089763-A-G 25943616-A-G P1_Y2 ***
28209477-A-G 26063330-A-G P1_b4 ***
28237286-G-T 26091139-G-T P1_b4 ***
28244718-T-A 26098571-T-A P1_b4 ***
28315448-A-T 26169301-A-T P1_b4 ***
28369251-G-T 26223104-G-T P1_gr2 ***
27445776-C-A 25299629-C-A P1_Y2 ***
27414858-A-C 25268711-A-C P1_g3 ***
28523024-A-T 26376877-A-T ***
26927595-A-G 24781448-A-G P1_r3 ***
26433993-G-T 24287846-G-T P1_Y1 ***
26570639-G-T 24424492-G-T P1_g2 ***
26570694-A-T 24424547-A-T P1_g2 ***
26641703-A-C 24495556-A-C P1_g2 ***
26641770-T-A 24495623-T-A P1_g2 ***
26641787-C-A 24495640-C-A P1_g2 ***
26927901-T-A 24781754-T-A P1_r3 ***
27397226-C-A 25251079-C-A P1_g3 ***
26991300-C-A 24845153-C-A P1_r4 ***
27131898-G-T 24985751-G-T P1_g3 ***
27225485-G-T 25079338-G-T P1_g3 ***
27239941-G-A 25093794-G-A P1_g3 ***
27317737-A-T 25171590-A-T P1_g3 ***
27332217-A-C 25186070-A-C P1_g3 ***
28401570-G-A 26255423-G-A P1_gr2 ***
28614405-G-A 26468258-G-A ***
3932615-ATTACT-A 4064574-ATTACT-A ***
59013641-T-A 56867494-T-A ***
58972971-T-C 56826824-T-C ***
58972986-T-C 56826839-T-C ***
58975801-T-A 56829654-T-A ***
58975827-C-T 56829680-C-T ***
58982554-C-G 56836407-C-G ***
59003914-G-T 56857767-G-T ***
59013643-T-A 56867496-T-A ***
58898343-A-T 56692528-T-A ***
4375699-G-GT 4507658-G-GT ***
7907528-G-GA 8039487-G-GA ***
7223194-CA-C 7355153-CA-C 22×A***
2888869-TCAAAAA-T 3020828-TCAAAAA-T ***
2955633-G-GT 3087592-G-GT 10×T***
3641028-T-TTTCTC 3772987-T-TTTCTC ***
58908664-C-G 56682207-G-C ***
58891546-G-T 56699325-C-A ***
28753494-C-T 26607347-C-T ***
58837536-C-G 56753335-G-C ***
28813372-T-A 26667225-T-A ***
58829915-T-A 56760956-A-T ***
58829965-G-A 56760906-C-T ***
58833592-C-G 56757279-G-C ***
58836957-G-C 56753914-C-G ***
58837510-A-G 56753361-T-C ***
58838999-C-G 56751872-G-C ***
58888972-G-T 56701899-C-A ***
58839036-A-T 56751835-T-A ***
58843071-A-G 56747800-T-C ***
58843076-G-A 56747795-C-T ***
58854572-C-T 56736299-G-A ***
58858767-C-A 56732104-G-T ***
58872552-A-G 56718319-T-C ***
58875801-A-C 56715070-T-G ***
21833224-C-A 19671338-C-A ***
18626280-G-T 16514400-G-T ***
21829797-G-A 19667911-G-A ***
2898324-G-A 3030283-G-A ***
5115220-C-A 5247179-C-A ***
5094117-C-G 5226076-C-G ***
4912163-C-T 5044122-C-T ***
4810058-T-A 4942017-T-A ***
4739558-T-C 4871517-T-C ***
4429771-C-A 4561730-C-A ***
4419988-A-G 4551947-A-G ***
4236358-C-A 4368317-C-A ***
4117888-A-G 4249847-A-G ***
4019889-A-G 4151848-A-G ***
3631754-A-G 3763713-A-G ***
3548729-G-C 3680688-G-C ***
3541112-T-C 3673071-T-C ***
19552558-T-C 17440678-T-C ***
5235442-G-T 5367401-G-T ***
22512285-T-A 20350399-T-A DYZ19 ***
22299800-C-A 20137914-C-A DYZ19 ***
22299801-A-C 20137915-A-C DYZ19 ***
58972985-A-T 56826838-A-T ***
22299780-G-A 20137894-G-A DYZ19 ***
22447484-T-G 20285598-T-G DYZ19 ***
22508760-G-A 20346874-G-A DYZ19 ***
59017205-CA-TG 56871058-CA-TG ***
13468981-TGT-AGA 11313305-TGT-AGA ***
28442546-G-A 26296399-G-A P1_gr2 ***
58875598-T-C 56715273-A-G ***
58996548-C-T 56850401-C-T ***
22366449-G-T 20204563-G-T DYZ19 ***
22438024-AGT-TGG 20276138-AGT-TGG DYZ19 ***
5194967-C-T 5326926-C-T ***
5624166-T-G 5756125-T-G ***
22460187-GTC-TTA 20298301-GTC-TTA DYZ19 ***
7027367-G-A 7159326-G-A ***
9317006-G-T 9479397-G-T ***
9238872-G-T 9401263-G-T ***
9194051-C-G 9356442-C-G ***
9181504-A-T 9343895-A-T ***
9032729-G-T 9195120-G-T ***
8296475-A-T 8428434-A-T ***
8296448-G-C 8428407-G-C ***
8092027-G-T 8223986-G-T ***
7632965-A-G 7764924-A-G ***
7573205-G-A 7705164-G-A ***
7380048-T-A 7512007-T-A ***
7264273-C-A 7396232-C-A ***
7137191-A-C 7269150-A-C ***
7063744-G-T 7195703-G-T ***
6954930-G-T 7086889-G-T ***
5684201-G-T 5816160-G-T ***
6795009-G-T 6926968-G-T ***
6496224-G-T 6628183-G-T ***
6496038-A-G 6627997-A-G ***
6310784-G-T 6442743-G-T IR3_Dst ***
6294144-T-G 6426103-T-G IR3_Dst ***
6264747-C-T 6396706-C-T IR3_Dst ***
6264722-G-A 6396681-G-A IR3_Dst ***
6166177-G-A 6298136-G-A IR3_Dst ***
6160901-G-A 6292860-G-A IR3_Dst ***
6106056-T-G 6238015-T-G ***
6106052-T-C 6238011-T-C ***
5903128-A-T 6035087-A-T ***
5846172-C-A 5978131-C-A ***
5783504-G-T 5915463-G-T ***
58996563-A-AGT 56850416-A-AGT ***
58833827-C-T 56757044-G-A ***
9557756-T-G 9720147-T-G IR3_Prx ***
27127743-C-T 24981596-C-T P1_g3 ***
58829930-T-G 56760941-A-C ***
58899937-GCATTC-G 56690904-AAATGG-A 5×CATTC***
58905500-G-C 56685371-C-G ***
58899971-A-G 56690900-T-C ***
58899828-G-A 56691043-C-T ***
58881574-GTCCAT-G 56709280-TAATGG-T ***
22366574-G-C 20204688-G-C DYZ19 ***
58980722-CTCC-TTCG 56834575-CTCC-TTCG ***
13746428-G-T 11590752-G-T ***
58837627-T-C 56753244-A-G ***
22325282-GG-AT 20163396-GG-AT DYZ19 ***
59010486-C-G 56864339-C-G ***
58999540-T-G 56853393-T-G ***
58837625-C-T 56753246-G-A ***
22508865-G-T 20346979-G-T DYZ19 ***
13485537-TATGTC-CGTGTA 11329861-TATGTC-CGTGTA ***
22447494-A-C 20285608-A-C DYZ19 ***
22299797-G-T 20137911-G-T DYZ19 ***
21580466-G-A 19418580-G-A ***
15295783-C-T 13183882-C-T FGC54747 ***
22508756-T-G 20346870-T-G DYZ19 ***
28818231-G-A 26672084-G-A ***
7107013-ATA-CTC 7238972-ATA-CTC ***
22218169-CGGAC-AGGAG 20056283-CGGAC-AGGAG DYZ19 ***
22446774-G-T 20284888-G-T DYZ19 ***
3902604-A-G 4034563-A-G ***
13728176-G-A 11572500-G-A ***
13723359-GTCA-CTCG 11567683-GTCA-CTCG ***
13726352-CTCCAATGGAATGGAG-C 11570676-CTCCAATGGAATGGAG-C ***
13857637-C-A 11736931-C-A ***
13489617-CCA-C 11333941-CCA-C ***
24425342-T-TGCAA 22279195-T-TGCAA ***
13141123-TATTCC-T 10630609-TATTCC-T 9×ATTCC***
58837621-C-A 56753250-G-T ***
26992989-G-T 24846842-G-T P1_r4 ***
22366593-A-C 20204707-A-C DYZ19 ***
6375068-C-T 6507027-C-T ***
17030782-G-TT 14918902-G-TT ***
58837526-CCATTCCATTC-G 56753335-GAATGGAATGG-C ***
27039975-C-T 24893828-C-T P1_r4 ***
58898379-CTTTC-TTTTA 56692488-GAAAG-TAAAA ***
58898358-CCATT-ACATG 56692509-AATGG-CATGT ***
58837619-CTCTATCTT-TTATATTAC 56753244-AAGATAGAG-GTAATATAA ***
58982529-G-C 56836382-G-C ***
58898368-C-T 56692503-G-A ***
58898362-T-G 56692509-A-C ***
58898358-C-A 56692513-G-T ***
58837626-T-A 56753245-A-T ***
3543166-C-CA 3675125-C-CA 14×A***
58891065-G-C 56699806-C-G ***
13454807-TAC-CAT 11299131-TAC-CAT ***
13723060-GTGG-TTGT 11567384-GTGG-TTGT ***
13448501-GT-CA 11292825-GT-CA ***
58980737-TTGCAT-CTCGAA 56834590-TTGCAT-CTCGAA ***
22508740-T-A 20346854-T-A DYZ19 ***
13480840-C-A 11325164-C-A ***
13480786-T-G 11325110-T-G ***
13480757-T-C 11325081-T-C ***
13707348-G-C 11551672-G-C ***
58978572-CTGGTGTG-GTGGAGTA 56832425-CTGGTGTG-GTGGAGTA ***
14986718-GCACACACA-G 12874786-GCACACA-G 18×CA***
27583000-CT-C 25436853-CT-C P1_Y2 22×T***
14418162-A-ATCTG ***
13346776-C-CA 11191100-C-CA 13×A***
9335399-C-A 9497790-C-A ***
9605900-C-A 9768291-C-A IR3_Prx ***
21747076-C-A 19585190-C-A ***
17270030-G-T 15158150-G-T ***
18041132-A-G 15929252-A-G ***
18041047-T-G 15929167-T-G ***
18007046-T-G 15895166-T-G P7_Gap ***
17994751-G-A 15882871-G-A P7_Prx ***
17812398-T-A 15700518-T-A ***
17797229-A-T 15685349-A-T ***
17730998-C-A 15619118-C-A ***
17702457-T-A 15590577-T-A ***
17644154-G-C 15532274-G-C ***
17644116-G-A 15532236-G-A ***
17634924-A-G 15523044-A-G ***
17543528-G-T 15431648-G-T ***
17276921-G-A 15165041-G-A ***
17265481-C-T 15153601-C-T ***
18138300-C-T 16026420-C-T ***
17245522-G-T 15133642-G-T ***
16994690-A-T 14882810-A-T ***
16978938-A-G 14867058-A-G ***
16972498-C-A 14860618-C-A ***
16814554-C-T 14702674-C-T ***
16676996-C-A 14565116-C-A ***
16210822-T-C 14098942-T-C ***
16064514-C-A 13952634-C-A ***
16025187-G-A 13913307-G-A ***
16022376-A-T 13910496-A-T ***
15958320-C-A 13846440-C-A ***
15943920-A-T 13832040-A-T ***
15762264-T-G 13650384-T-G ***
15672118-G-A 13560238-G-A ***
18057015-C-T 15945135-C-T ***
18290796-C-A 16178916-C-A P6_Prx ***
15631808-T-C 13519928-T-C ***
20549130-T-A 18387244-T-A P5_Dst ***
21634736-A-G 19472850-A-G ***
21602556-C-A 19440670-C-A ***
21574781-G-A 19412895-G-A ***
21497952-G-A 19336066-G-A ***
21391723-A-C 19229837-A-C ***
21281375-G-A 19119489-G-A ***
21279479-G-T 19117593-G-T ***
21030518-C-A 18868632-C-A P4_Dst ***
20985759-T-C 18823873-T-C P4_Dst ***
20895969-T-A 18734083-T-A P4_Dst ***
20769166-T-A 18607280-T-A P4_Prx ***
20769121-A-G 18607235-A-G P4_Prx ***
20673763-C-A 18511877-C-A P4_Prx ***
20657329-T-A 18495443-T-A P4_Prx ***
20242942-C-A 18081056-C-A P5_Dst ***
18290812-C-A 16178932-C-A P6_Prx ***
19559303-A-G 17447423-A-G ***
19554765-C-A 17442885-C-A ***
19377174-G-A 17265294-G-A ***
19377137-A-G 17265257-A-G ***
19097639-C-T 16985759-C-T ***
19097545-T-G 16985665-T-G ***
19041639-G-A 16929759-G-A ***
19030776-A-T 16918896-A-T ***
19014227-C-A 16902347-C-A ***
19014201-A-C 16902321-A-C ***
18710458-A-C 16598578-A-C ***
18651713-C-A 16539833-C-A ***
18626273-A-T 16514393-A-T ***
18435267-A-G 16323387-A-G P6_Dst ***
15647405-T-G 13535525-T-G ***
15213128-T-G 13101214-T-G ***
9664060-T-C 9826451-T-C IR3_Prx ***
13351087-T-C 11195411-T-C ***
13728809-G-A 11573133-G-A ***
13728647-A-G 11572971-A-G ***
13720259-T-C 11564583-T-C ***
13702458-G-T 11546782-G-T ***
13671567-A-G 11515891-A-G ***
13644096-G-T 11488420-G-T ***
13599354-G-A 11443678-G-A ***
13489162-C-A 11333486-C-A ***
13489087-G-T 11333411-G-T ***
13466921-A-G 11311245-A-G ***
13466848-C-A 11311172-C-A ***
13466843-C-T 11311167-C-T ***
13465799-A-G 11310123-A-G ***
13465219-C-T 11309543-C-T ***
13338878-A-G 11183202-A-G ***
13728999-G-A 11573323-G-A ***
13222127-A-G 11066451-A-G ***
13140911-T-C 10630397-T-C ***
13140410-G-T 10629896-G-T ***
13140390-T-G 10629876-T-G ***
13134951-A-T 10624437-A-T ***
10078146-G-T 10240537-G-T ***
10044202-T-C 10206593-T-C ***
10003321-T-C 10165712-T-C ***
9918680-G-T 10081071-G-T ***
9799678-A-T 9962069-A-T ***
9769010-C-G 9931401-C-G ***
9702633-T-C 9865024-T-C IR3_Prx ***
9685605-C-A 9847996-C-A IR3_Prx ***
9673445-G-T 9835836-G-T IR3_Prx ***
13728985-A-T 11573309-A-T ***
13730278-T-A 11574602-T-A ***
15157810-A-C 13045897-A-C ***
13867956-G-T 11747250-G-T ***
15098595-T-G 12986683-T-G ***
15098593-G-T 12986681-G-T ***
15098589-G-A 12986677-G-A ***
15098570-C-A 12986658-C-A ***
15098565-C-T 12986653-C-T ***
15098563-G-A 12986651-G-A ***
14964473-T-G 12852548-T-G ***
14635538-A-T 12523607-A-T ***
14632068-T-C 12520137-T-C ***
14257577-C-T 12136871-C-T ***
14153187-T-G 12032481-T-G ***
13972198-T-A 11851492-T-A ***
13972197-A-C 11851491-A-C ***
13867970-C-T 11747264-C-T ***
13867950-G-T 11747244-G-T ***
13730329-G-T 11574653-G-T ***
13867941-G-A 11747235-G-A ***
13862513-T-A 11741807-T-A ***
13860300-G-C 11739594-G-C ***
13850261-C-T 11729555-C-T ***
13845600-A-C 11724894-A-C ***
13746452-C-A 11590776-C-A ***
13746447-A-G 11590771-A-G ***
13746400-G-A 11590724-G-A ***
13746370-A-G 11590694-A-G 4×AATGG***
13746369-C-G 11590693-C-G ***
13746305-G-A 11590629-G-A ***
13744107-T-A 11588431-T-A ***
13737217-C-T 11581541-C-T ***
13734788-A-T 11579112-A-T ***
58996548-CTGCCTACAGGGG-TTGACTGCA 56850401-CTGCCTACAGGGG-TTGACTGCA ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

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