Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > DF21/S192 > Z30233 > FGC3903/S5201 > S5199 > Z246 > DF25 > DF5 > 22259639-T-C > FGC5780 > L658 > FGC5757 > FGC5787 > FGC15489

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFGC
JMGSC
14806113-C-G 12694184-C-G FGC59461 YY+
2747089-A-C 2879048-A-C FGC59456 YY+
4591959-T-C 4723918-T-C FGC59459 +
18984912-G-A 16873032-G-A FGC59463 YY+
3244633-C-T 3376592-C-T FGC59458 +
3022564-C-G 3154523-C-G FGC59457 +
16810334-T-G 14698454-T-G FGC59462 YY+
25840090-G-C 23693943-G-C FGC59464 P1_b3 *
22986733-T-G 20824847-T-G **
22986709-C-T 20824823-C-T **
4739254-T-C 4871213-T-C **
6591309-A-G 6723268-A-G **
22544416-C-A 20382530-C-A **
23028766-G-T 20866880-G-T **
6007855-T-C 6139814-T-C **
7346743-T-A 7478702-T-A **
5194470-T-A 5326429-T-A **
5106414-T-G 5238373-T-G **
4822634-C-A 4954593-C-A **
15630805-C-T 13518925-C-T **
4737351-A-T 4869310-A-T **
4621617-A-G 4753576-A-G **
4620251-A-G 4752210-A-G **
22509135-A-T 20347249-A-T DYZ19 **
4227516-A-G 4359475-A-G **
4224009-G-A 4355968-G-A **
2676740-T-A 2808699-T-A **
22509092-T-G 20347206-T-G DYZ19 **
15958255-A-G 13846375-A-G **
15958245-A-G 13846365-A-G **
22250384-C-A 20088498-C-A DYZ19 **
8174844-C-T 8306803-C-T **
22457877-A-T 20295991-A-T DYZ19 **
22509088-G-C 20347202-G-C DYZ19 **
14164278-C-A 12043572-C-A **
18411881-A-G 16300001-A-G P6_Gap **
17245748-C-T 15133868-C-T **
17227206-C-T 15115326-C-T **
18860087-T-C 16748207-T-C **
16998830-G-C 14886950-G-C **
16998809-T-A 14886929-T-A **
16974633-C-A 14862753-C-A **
15962754-T-C 13850874-T-C **
18975018-T-A 16863138-T-A **
15958223-G-T 13846343-G-T **
19013252-A-T 16901372-A-T **
19013299-A-G 16901419-A-G **
20640634-A-T 18478748-A-T P4_Prx **
9433779-C-A 9596170-C-A **
21449839-A-G 19287953-A-G **
21823655-G-A 19661769-G-A **
13849965-T-A 11729259-T-A **
22250377-G-C 20088491-G-C DYZ19 **
22267969-C-A 20106083-C-A DYZ19 **
13548935-A-T 11393259-A-T **
13424891-T-A 11269215-T-A **
10083615-A-G 10246006-A-G **
10056351-A-C 10218742-A-C **
9804739-C-A 9967130-C-A **
9799437-C-T 9961828-C-T **
22457817-G-A 20295931-G-A DYZ19 **
58854627-C-CCATTG 56736239-G-GAATGC **
58839952-A-T 56750919-T-A **
18133120-T-C 16021240-T-C **
26170527-G-GGAAGAAGAA 24024380-G-GGAAGAAGAA P1_Y1 23×GAA**
58999377-C-T 56853230-C-T **
22250343-A-C 20088457-A-C FGC39435 DYZ19 **
20126609-AT-A 18014729-AT-A P5_Dst **
5872256-A-T 6004215-A-T Z3151 Y257 9×AAT**
8344660-A-G 8476619-A-G M1559 **
4983349-G-GA 5115308-G-GA **
9428920-C-T 9591311-C-T **
58854644-A-C 56736227-T-G **
59019260-G-A 56873113-G-A **
58836741-T-C 56754130-A-G **
59017340-G-T 56871193-G-T **
28613788-G-T 26467641-G-T **
8972132-G-C 9134523-G-C **
59010308-C-T 56864161-C-T **
22489911-A-C 20328025-A-C DYZ19 ***
22489856-G-A 20327970-G-A DYZ19 ***
13545357-A-AAGAT 11389681-A-AAGAT ***
22478103-G-T 20316217-G-T BY25630 DYZ19 ***
22470809-T-G 20308923-T-G DYZ19 ***
22470530-T-G 20308644-T-G DYZ19 ***
13868278-TA-AT 11747572-TA-AT ***
14100350-T-TGAACGTGCAGCGCGCAGCAGCGAACGTGCAGCGCGCAGCAGC 11979644-T-TGAACGTGCAGCGCGCAGCAGCGAACGTGCAGCGCGCAGCAGC ***
13486724-TCCAAC-GCCTAG 11331048-TCCAAC-GCCTAG ***
14304710-C-CA 12184004-C-CA 8×A***
13868265-TGA-GGT 11747559-TGA-GGT ***
13486713-CCA-TGG 11331037-CCA-TGG ***
22446820-G-T 20284934-G-T DYZ19 ***
22434006-C-A 20272120-C-A DYZ19 ***
22433395-G-T 20271509-G-T DYZ19 ***
22433362-C-T 20271476-C-T DYZ19 ***
22422928-C-G 20261042-C-G DYZ19 ***
14612266-T-TAGAA 12500472-T-TAGAA ***
13482143-GTAGG-CTAGT 11326467-GTAGG-CTAGT ***
22357747-A-T 20195861-A-T DYZ19 ***
22349148-C-T 20187262-C-T DYZ19 ***
23319718-A-C 21157832-A-C ***
22491057-A-C 20329171-A-C DYZ19 ***
23029299-A-G 20867413-A-G ***
23106561-T-A 20944675-T-A ***
23004488-T-A 20842602-T-A ***
23106510-A-G 20944624-A-G ***
13695469-GTG-CTT 11539793-GTG-CTT ***
13729470-GAGAGGA-TAGCGGC 11573794-GAGAGGA-TAGCGGC ***
22962088-G-A 20800202-G-A ***
13729630-AAA-GAG 11573954-AAA-GAG ***
23106531-C-G 20944645-C-G ***
22690775-C-A 20528889-C-A ***
13866615-AAATCGTGTGGAAC-GAATGGGCTGCAAT 11745909-AAATCGTGTGGAAC-GAATGGGCTGCAAT ***
22541356-C-T 20379470-C-T ***
22505779-T-A 20343893-T-A DYZ19 ***
22517750-C-T 20355864-C-T ***
22510635-A-C 20348749-A-C DYZ19 ***
22510570-A-T 20348684-A-T DYZ19 ***
22510540-C-A 20348654-C-A DYZ19 ***
13866670-GAAG-AAAT 11745964-GAAG-AAAT ***
22328554-T-A 20166668-T-A DYZ19 ***
22510260-G-A 20348374-G-A DYZ19 ***
13868195-G-GGAAAC 11747489-G-GGAAAC ***
13868257-AGTC-TGTT 11747551-AGTC-TGTT ***
23231161-C-T 21069275-C-T ***
22335605-A-G 20173719-A-G DYZ19 ***
22313221-G-T 20151335-G-T DYZ19 ***
22321206-T-G 20159320-T-G DYZ19 ***
18861261-A-T 16749381-A-T ***
19577015-G-T 17465135-G-T P5_Prx ***
19561076-A-C 17449196-A-C ***
19433852-G-T 17321972-G-T ***
22986714-CT-C 20824828-CT-C 8×T***
23036677-TCA-T 20874791-TCA-T ***
23076123-GA-G 20914237-GA-G ***
24107663-CAAAAA-C 21961516-CAAAAA-C P3_b1 18×A***
27642030-GAGGC-AAGGA 25495883-GAGGC-AAGGA P1_Y2 ***
18902410-A-T 16790530-A-T ***
18869675-A-C 16757795-A-C ***
18861296-G-T 16749416-G-T ***
28795710-C-CG 26649563-C-CG ***
19849875-T-G 17737995-T-G P5_Prx ***
58881472-CATTCCATTCCTTTCT-C 56709373-TGGAATGGAATAGAAA-T ***
58891017-AT-TC 56699853-AT-GA ***
58891035-GCAT-CTAA 56699833-ATGC-TTAG 4×CATTC***
58903455-CTCC-TTCA 56687413-GGAG-TGAA ***
18653018-A-C 16541138-A-C ***
58903516-GCATTC-A 56687350-GAATGC-T 5×CATTC***
59004628-G-GAAAA 56858481-G-GAAAA ***
18652996-A-C 16541116-A-C ***
18455021-A-C 16343141-A-C P6_Dst ***
59008765-AAT-A 56862618-AAT-A ***
18329043-C-T 16217163-C-T P6_Prx 17×T***
18134336-G-T 16022456-G-T ***
19709910-T-C 17598030-T-C P5_Prx ***
22510595-CCT-TCC 20348709-CCT-TCC DYZ19 ***
22315889-T-G 20154003-T-G DYZ19 ***
22146559-G-T 19984673-G-T ***
23673204-G-A 21511318-G-A ***
22308346-T-A 20146460-T-A DYZ19 ***
22307162-C-A 20145276-C-A DYZ19 ***
22307074-G-A 20145188-G-A DYZ19 ***
15048489-GTTTTTTT-G 12936580-GTTTTTTT-G 19×T***
22283764-A-G 20121878-A-G DYZ19 ***
22275959-A-C 20114073-A-C DYZ19 ***
15263360-A-ATATAAT 13151450-A-ATATAAT ***
22261326-T-G 20099440-T-G DYZ19 ***
22249315-A-C 20087429-A-C DYZ19 ***
22182147-A-G 20020261-A-G ***
22150228-C-T 19988342-C-T ***
20842513-GAAGGGAAA-G 18680627-GAAGGGAAA-G P4_Dst ***
20244047-A-G 18082161-A-G P5_Dst ***
21966484-G-A 19804598-G-A ***
21956332-G-A 19794446-G-A ***
21913377-T-C 19751491-T-C ***
21829507-G-A 19667621-G-A ***
21338557-TA-T 19176671-TA-T ***
21787925-G-A 19626039-G-A ***
21275804-G-A 19113918-G-A ***
22283764-AA-GT 20121878-AA-GT DYZ19 ***
22510049-GTTC-CTTG 20348163-GTTC-CTTG DYZ19 ***
20616873-A-G 18454987-A-G P4_Prx ***
20604167-C-A 18442281-C-A P5_Dst ***
20489323-G-T 18327437-G-T P5_Dst ***
23519782-A-G 21357896-A-G ***
24215898-A-T 22069751-A-T P3_b1 ***
24109883-C-A 21963736-C-A P3_b1 ***
27864146-T-A 25717999-T-A P1_Y2 ***
28489154-A-T 26343007-A-T ***
28430278-G-A 26284131-G-A P1_gr2 ***
28253459-T-A 26107312-T-A P1_b4 ***
28170459-A-T 26024312-A-T P1_b4 ***
28170454-T-C 26024307-T-C P1_b4 ***
28032051-C-A 25885904-C-A P1_Y2 ***
28006210-T-C 25860063-T-C P1_Y2 ***
27994754-G-A 25848607-G-A P1_Y2 ***
27936455-C-A 25790308-C-A P1_Y2 ***
27935541-A-T 25789394-A-T P1_Y2 ***
27864220-T-A 25718073-T-A P1_Y2 ***
27856980-T-A 25710833-T-A P1_Y2 ***
58821531-C-T 56769340-G-A ***
27848666-G-T 25702519-G-T P1_Y2 ***
27848580-G-A 25702433-G-A P1_Y2 ***
27828930-C-A 25682783-C-A P1_Y2 ***
27814570-C-T 25668423-C-T P1_Y2 ***
27711897-C-G 25565750-C-G P1_Y2 ***
27648816-G-A 25502669-G-A P1_Y2 ***
27642043-C-A 25495896-C-A P1_Y2 ***
27642026-C-A 25495879-C-A P1_Y2 ***
27642018-C-A 25495871-C-A P1_Y2 ***
27570307-G-T 25424160-G-T P1_Y2 ***
27499758-G-T 25353611-G-T P1_Y2 ***
27356900-G-A 25210753-G-A P1_g3 ***
58821504-G-A 56769367-C-T ***
58823545-C-T 56767326-G-A ***
27262597-T-C 25116450-T-C P1_g3 ***
58869107-G-A 56721764-C-T ***
59010252-A-G 56864105-A-G ***
58978567-C-A 56832420-C-A ***
58978559-T-C 56832412-T-C ***
58973518-C-T 56827371-C-T ***
58903521-C-A 56687350-G-T ***
58891008-T-A 56699863-A-T ***
58891003-T-C 56699868-A-G ***
58888206-G-C 56702665-C-G ***
58874899-G-C 56715972-C-G ***
58869158-T-G 56721713-A-C ***
58869121-C-T 56721750-G-A ***
58862990-A-G 56727881-T-C ***
58823570-C-A 56767301-G-T ***
58858929-T-A 56731942-A-T ***
58858896-C-G 56731975-G-C ***
58855126-G-A 56735745-C-T ***
58854540-T-C 56736331-A-G ***
58853272-C-T 56737599-G-A ***
58846033-C-A 56744838-G-T ***
58836698-A-G 56754173-T-C ***
58836663-A-G 56754208-T-C ***
58833600-T-C 56757271-A-G ***
58830698-C-A 56760173-G-T ***
58830276-G-T 56760595-C-A ***
59010654-T-A 56864507-T-A ***
27285212-G-A 25139065-G-A P1_g3 ***
27235080-T-C 25088933-T-C P1_g3 ***
24142235-C-T 21996088-C-T P3_b1 ***
25065174-G-A 22919027-G-A g1 ***
5904027-GAATCAAA-G 6035986-GAATCAAA-G ***
25240263-A-G 23094116-A-G P2_r1 ***
25207767-G-T 23061620-G-T P2_r1 ***
25201667-G-T 23055520-G-T g1 ***
25158852-C-G 23012705-C-G g1 ***
6247047-A-AT 6379006-A-AT IR3_Dst 9×T***
7098902-TAAAAA-T 7230861-TAAAAA-T 16×A***
25158751-C-T 23012604-C-T g1 ***
25145618-C-G 22999471-C-G g1 ***
8125065-A-AGAAGG 8257024-A-AGAAGG ***
25111655-G-T 22965508-G-T g1 ***
25012476-C-A 22866329-C-A g1 ***
25241020-A-G 23094873-A-G P2_r1 ***
8367621-C-CA 8499580-C-CA ***
13450442-TCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCTTA-T 11294766-TCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCTTA-T ***
24766205-C-T 22620058-C-T P3_b2 ***
24635841-A-T 22489694-A-T P3_t2 ***
24563920-A-T 22417773-A-T P3_t2 ***
13480331-GG-TT 11324655-GG-TT ***
24245009-G-A 22098862-G-A P3_b1 ***
24231947-A-C 22085800-A-C P3_b1 ***
13480378-CT-GA 11324702-CT-GA ***
13482054-AG-GT 11326378-AG-GT ***
59010290-T-C 56864143-T-C ***
24168099-A-G 22021952-A-G P3_b1 ***
5178062-CAAAAA-C 5310021-CAAAAA-C 20×A***
25246535-A-T 23100388-A-T P2_r1 ***
27181803-C-A 25035656-C-A P1_g3 ***
26465614-T-A 24319467-T-A P1_Y1 ***
27168570-G-A 25022423-G-A P1_g3 ***
27161904-T-C 25015757-T-C P1_g3 ***
27161894-G-A 25015747-G-A P1_g3 ***
10047748-T-TA 10210139-T-TA 12×A***
26994990-A-C 24848843-A-C P1_r4 ***
26727571-G-A 24581424-G-A P1_g2 ***
26630592-T-A 24484445-T-A P1_g2 ***
26612912-T-G 24466765-T-G P1_g2 ***
26599436-T-G 24453289-T-G P1_g2 ***
26592132-G-T 24445985-G-T P1_g2 ***
26507419-G-A 24361272-G-A P1_Y1 ***
26345650-G-T 24199503-G-T P1_Y1 ***
25246662-A-T 23100515-A-T P2_r1 ***
26345615-C-A 24199468-C-A P1_Y1 ***
26294359-A-G 24148212-A-G P1_Y1 ***
26278860-G-T 24132713-G-T P1_Y1 ***
26228752-C-T 24082605-C-T P1_Y1 ***
26025602-A-T 23879455-A-T P1_Y1 ***
25998420-G-A 23852273-G-A P1_Y1 ***
25985610-T-C 23839463-T-C P1_Y1 ***
25862230-C-A 23716083-C-A P1_Y1 ***
25732414-A-C 23586267-A-C P1_b3 ***
25716815-C-A 23570668-C-A P1_b3 ***
25606845-A-T 23460698-A-T P1_gr1 ***
18133104-G-T 16021224-G-T ***
25357709-G-T 23211562-G-T P2_r2 ***
13446527-C-CTCCAT 11290851-C-CTCCAT 16×TCCAT***
17933174-G-A 15821294-G-A ***
58866644-T-A 56724227-A-T ***
13459257-A-C 11303581-A-C ***
13866728-T-TGGAATAGAATGGAAA 11746022-T-TGGAATAGAATGGAAA ***
9299615-T-C 9462006-T-C ***
20989104-TACACAC-T 18827218-TACACAC-T P4_Dst 25×AC***
58891476-C-A 56699395-G-T ***
58891429-T-C 56699442-A-G ***
13459277-A-T 11303601-A-T ***
8125052-GAAGA-G 8257011-GAAGA-G ***
13719069-GGGAGTG-TGGACTC 11563393-GGGAGTG-TGGACTC ***
13489300-ATC-GTT 11333624-ATC-GTT ***
17046715-GT-G 14934835-GT-G 25×T***
27222138-G-A 25075991-G-A P1_g3 ***
22359646-G-A 20197760-G-A DYZ19 ***
13459273-TTCCA-CTCCT 11303597-TTCCA-CTCCT ***
13461146-AAAGA-CAAGG 11305470-AAAGA-CAAGG ***
58903455-C-T 56687416-G-A ***
22357721-T-G 20195835-T-G DYZ19 ***
13461160-C-A 11305484-C-A ***
13730698-AT-TA 11575022-AT-TA ***
4650472-GATAT-G 4782431-GATAT-G 24×AT***
58869487-A-T 56721384-T-A ***
58862646-G-C 56728225-C-G ***
58890989-CCCACT-C 56699873-ATGGAG-A ***
8555556-T-TGTTTTG 8687515-T-TGTTTTG ***
22433382-A-C 20271496-A-C DYZ19 ***
28488661-G-A 26342514-G-A ***
26564201-G-T 24418054-G-T P1_g2 ***
13459263-TTCCAT-CTCAAA 11303587-TTCCAT-CTCAAA ***
20326075-G-T 18164189-G-T P5_Dst ***
13737641-CAAAAT-TTAAAA 11581965-CAAAAT-TTAAAA ***
22359601-T-C 20197715-T-C DYZ19 ***
13486643-C-T 11330967-C-T ***
13486621-G-C 11330945-G-C ***
13866714-CGAAC-GGAAT 11746008-CGAAC-GGAAT ***
13866697-TTA-CTC 11745991-TTA-CTC ***
13486675-TACCT-CACCC 11330999-TACCT-CACCC ***
7601003-ACATG-A 7732962-ACATG-A ***
58903436-G-C 56687435-C-G ***
58834226-T-A 56756645-A-T ***
22283752-G-T 20121866-G-T DYZ19 ***
13450406-CTCCACTCCATTCCATTCCATTCTATTCCATTCCAT-C 11294730-CTCCACTCCATTCCATTCCATTCTATTCCATTCCAT-C ***
13449696-CTCCATTCCAT-C 11294020-CTCCATTCCAT-C 11×TCCAT***
22359612-GAAT-AAAG 20197726-GAAT-AAAG DYZ19 ***
22359587-C-T 20197701-C-T DYZ19 ***
14986718-GCACACACA-G 12874786-GCACACA-G 18×CA***
22359579-C-G 20197693-C-G DYZ19 ***
13730459-T-A 11574783-T-A ***
13141893-AAGAATCTC-GAATATCTG 10631379-AAGAATCTC-GAATATCTG ***
13140558-C-G 10630044-C-G ***
9199452-G-T 9361843-G-T ***
13486708-T-A 11331032-T-A ***
59018723-C-G 56872576-C-G ***
58979903-TGAA-CCAG 56833756-TGAA-CCAG ***
58978548-CAGGG-TAGGA 56832401-CAGGG-TAGGA ***
13449891-TTTT-ATATTC 11294215-TTTT-ATATTC ***
5659707-G-GTATA 5791666-G-GTATA 28×TA***
58866686-C-G 56724185-G-C ***
58842667-T-C 56748204-A-G ***
9199529-A-C 9361920-A-C A19876 ***
13456025-A-ATTCCC 11300349-A-ATTCCC ***
13486595-CAAGT-AAAGG 11330919-CAAGT-AAAGG ***
9300240-AACACACACACAC-A 9462631-AACACACACACAC-A 20×AC***
13451550-A-ACTGCC 11295874-A-ACTGCC ***
13449759-CATTCTATTCCATTCT-C 11294083-CATTCTATTCCATTCT-C ***
13263679-G-T 11108003-G-T ***
13263676-T-A 11108000-T-A ***
59024399-TGCACACACACACACACACAT-CGCACACACACACACACACACAC 56878252-TGCACACACACACACACACAT-CGCACACACACACACACACACAC ***
26262207-G-T 24116060-G-T P1_Y1 ***
24672340-A-AG 22526193-A-AG P3_b2 ***
13447284-C-T 11291608-C-T ***
58842661-T-A 56748210-A-T ***
22446824-C-T 20284938-C-T BY3918 DYZ19 ***
58819477-C-G 56771394-G-C ***
19284019-GTATGC-G 17172139-GTATGC-G 10×TATGC***
27610009-AAC-A 25463862-AAC-A P1_Y2 21×AC***
59000468-C-T 56854321-C-T ***
22272305-A-G 20110419-A-G BY39174 DYZ19 ***
22272295-C-G 20110409-C-G DYZ19 ***
13263676-TGCG-AGCT 11108000-TGCG-AGCT ***
22480249-T-G 20318363-T-G BY25230 DYZ19 ***
58858774-C-A 56732097-G-T ***
22226585-G-C 20064699-G-C DYZ19 ***
59033463-G-A 56887316-G-A ***
58980546-TC-AT 56834399-TC-AT ***
27583000-CTT-C 25436853-CTT-C P1_Y2 22×T***
22357720-G-T 20195834-G-T DYZ19 ***
22242910-T-C 20081024-T-C DYZ19 ***
58833986-CCCATT-C 56756844-CAATGG-C 8×CCATT***
25628466-G-T 23482319-G-T P1_b3 ***
13465287-G-A 11309611-G-A ***
59021073-G-A 56874926-G-A ***
58866643-GT-AA 56724227-AC-TT ***
13729637-C-A 11573961-C-A ***
13446527-CTCCATTCCATTCCATTCCATTCCATTCCAT-C 11290851-CTCCATTCCATTCCATTCCATTCCATTCCAT-C 16×TCCAT***
25207815-T-C 23061668-T-C P2_r1 ***
58853413-G-C 56737458-C-G ***
3662791-G-A 3794750-G-A ***
22313200-A-C 20151314-A-C BY25065 DYZ19 ***
13729613-G-T 11573937-G-T ***
58850490-A-G 56740381-T-C ***
22427309-TT-CA 20265423-TT-CA DYZ19 ***
13489393-TGCCTGG-GGGCTGT 11333717-TGCCTGG-GGGCTGT ***
13263067-A-T 11107391-A-T ***
13489363-CTTCTCCCC-GTTCCACT 11333687-CTTCTCCCC-GTTCCACT ***
9197652-G-A 9360043-G-A ***
25207774-G-A 23061627-G-A P2_r1 ***
13729515-AAATGG-A 11573839-AAATGG-A ***
59019425-T-A 56873278-T-A ***
59018676-C-T 56872529-C-T ***
59011846-C-A 56865699-C-A ***
22508286-G-T 20346400-G-T Z12530 DYZ19 ***
22440928-G-C 20279042-G-C DYZ19 ***
16664729-G-A 14552849-G-A Z14353 ***
13645353-A-T 11489677-A-T ***
13440077-A-G 11284401-A-G ***
13729585-G-A 11573909-G-A ***
22430906-C-G 20269020-C-G DYZ19 ***
25628471-G-A 23482324-G-A P1_b3 ***
5477636-C-A 5609595-C-A ***
13729554-CA-GG 11573878-CA-GG ***
13486668-G-C 11330992-G-C ***
13486636-ACA-GC 11330960-ACA-GC ***
17859117-T-C 15747237-T-C ***
13486735-A-G 11331059-A-G ***
13868267-A-T 11747561-A-T ***
13868260-C-T 11747554-C-T ***
13868228-A-G 11747522-A-G ***
13740676-C-A 11585000-C-A ***
13737646-T-A 11581970-T-A ***
13729555-A-G 11573879-A-G 4×AATGG***
13729490-G-A 11573814-G-A ***
13729476-A-C 11573800-A-C ***
13729473-A-C 11573797-A-C ***
13729470-G-T 11573794-G-T ***
13697603-G-A 11541927-G-A ***
13611422-G-T 11455746-G-T ***
13486699-A-G 11331023-A-G ***
14019644-A-G 11898938-A-G ***
13482068-A-T 11326392-A-T ***
13480345-G-A 11324669-G-A ***
13480325-T-A 11324649-T-A ***
13480242-T-A 11324566-T-A ***
13480207-A-G 11324531-A-G ***
13480204-T-C 11324528-T-C ***
13459266-C-A 11303590-C-A ***
13454643-G-T 11298967-G-T ***
10074746-T-A 10237137-T-A ***
10069517-A-T 10231908-A-T ***
10065262-A-T 10227653-A-T ***
10065251-G-T 10227642-G-T ***
10056505-A-T 10218896-A-T ***
14019643-C-T 11898937-C-T ***
14019652-C-G 11898946-C-G ***
9703255-A-C 9865646-A-C IR3_Prx ***
15962728-T-A 13850848-T-A ***
17857671-T-C 15745791-T-C ***
17835401-A-G 15723521-A-G ***
17823004-A-T 15711124-A-T ***
17798543-G-C 15686663-G-C ***
17798518-G-C 15686638-G-C ***
17323825-T-G 15211945-T-G ***
17218830-G-A 15106950-G-A ***
17084301-T-G 14972421-T-G ***
16702035-T-C 14590155-T-C ***
16682714-G-A 14570834-G-A ***
16394903-T-C 14283023-T-C ***
16321899-A-G 14210019-A-G ***
15958272-G-A 13846392-G-A ***
14019659-C-A 11898953-C-A ***
15808817-T-G 13696937-T-G ***
15805679-T-A 13693799-T-A ***
15644271-A-G 13532391-A-G ***
13489032-G-C 11333356-G-C ***
15298714-G-T 13186813-G-T ***
15171353-A-C 13059439-A-C ***
14961064-A-T 12849139-A-T ***
14515362-T-A 12403563-T-A ***
14261257-T-G 12140551-T-G ***
14246974-A-T 12126268-A-T ***
14178452-T-A 12057746-T-A ***
14111698-T-C 11990992-T-C ***
14019662-C-T 11898956-C-T ***
9703407-G-A 9865798-G-A IR3_Prx ***
9677983-A-C 9840374-A-C IR3_Prx ***
13486662-AC-A 11330986-AC-A ***
22510533-G-A 20348647-G-A DYZ19 ***
4629977-A-T 4761936-A-T ***
4622657-A-G 4754616-A-G ***
4620722-C-T 4752681-C-T ***
4620418-A-G 4752377-A-G ***
4620413-T-A 4752372-T-A ***
4219384-T-G 4351343-T-G ***
3872863-C-A 4004822-C-A ***
3452228-C-T 3584187-C-T ***
3152092-T-C 3284051-T-C ***
3144004-G-C 3275963-G-C ***
2672798-G-T 2804757-G-T ***
22466432-G-T 20304546-G-T DYZ19 ***
22469486-A-C 20307600-A-C DYZ19 ***
4763496-C-A 4895455-C-A ***
15480003-T-G 13368123-T-G ***
22436562-C-G 20274676-C-G DYZ19 ***
13866705-G-A 11745999-G-A ***
7223194-CA-C 7355153-CA-C 22×A***
4375699-G-GT 4507658-G-GT ***
58872552-A-G 56718319-T-C ***
22489929-G-A 20328043-G-A DYZ19 ***
8724598-G-T 8856557-G-T ***
21346975-T-TTATATATATATATA 19185089-T-TTATATATATATATA 29×TA***
58870114-T-G 56720757-A-C ***
5474838-G-C 5606797-G-C ***
13459263-T-C 11303587-T-C ***
13842730-GTGGAATGGAA-G 11722024-GTGGAATGGAA-G 12×TGGAA***
4739280-T-C 4871239-T-C ***
4763571-G-A 4895530-G-A ***
9666042-C-T 9828433-C-T IR3_Prx ***
6750267-T-G 6882226-T-G ***
9610098-T-C 9772489-T-C IR3_Prx ***
9557581-T-C 9719972-T-C IR3_Prx ***
9536608-C-T 9698999-C-T IR3_Prx ***
9428007-T-A 9590398-T-A ***
9323670-G-C 9486061-G-C ***
8972094-A-T 9134485-A-T ***
8724345-C-T 8856304-C-T ***
8178333-C-A 8310292-C-A ***
7301390-C-G 7433349-C-G ***
7201594-C-T 7333553-C-T ***
7094966-G-A 7226925-G-A ***
7002257-T-C 7134216-T-C ***
6903605-A-T 7035564-A-T ***
6664510-G-A 6796469-G-A ***
4763595-T-G 4895554-T-G ***
6572647-A-T 6704606-A-T ***
6572602-T-C 6704561-T-C ***
6534900-T-G 6666859-T-G ***
6528161-C-T 6660120-C-T ***
6294138-C-A 6426097-C-A IR3_Dst ***
6289100-G-T 6421059-G-T IR3_Dst ***
6260387-A-C 6392346-A-C IR3_Dst ***
6212124-G-T 6344083-G-T IR3_Dst ***
6200856-A-T 6332815-A-T IR3_Dst ***
6107350-T-A 6239309-T-A ***
6008838-C-T 6140797-C-T ***
4763626-T-G 4895585-T-G ***
4763621-T-A 4895580-T-A ***
59017775-AA-TATATAT 56871628-AA-TATATAT ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

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