Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > S16264 > L679 > A7314

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFGC
18143721-G-T 16031841-G-T YY+
7645345-G-C 7777304-G-C YY+
3087272-C-T 3219231-C-T +
4515841-G-A 4647800-G-A +
4583537-C-G 4715496-C-G +
5047434-G-A 5179393-G-A +
5177805-T-G 5309764-T-G +
5792457-G-A 5924416-G-A +
7456308-T-C 7588267-T-C IR1_L +
8394107-C-G 8526066-C-G YY+
9787477-TA-T 9949868-TA-T +
9034427-G-A 9196818-G-A Y+
13911662-T-C 11790956-T-C Y+
13919227-A-T 11798521-A-T Y+
14036406-G-A 11915700-G-A YY+
16177296-C-T 14065416-C-T Y+
16520845-T-C 14408965-T-C YY+
22532295-C-A 20370409-C-A Y+
28513506-C-T 26367359-C-T +
3030451-A-G 3162410-A-G +
21129091-G-T 18967205-G-T YY+
14671961-G-A 12560027-G-A Z1787 M3866 CTS3119 Y+
16030595-CAT-C 13918715-CAT-C +
25800560-C-G 23654413-C-G P1_b3 *
22505361-A-C 20343475-A-C DYZ19 *
3920777-C-T 4052736-C-T *
27649222-G-A 25503075-G-A P1_Y2 *
5947111-C-T 6079070-C-T *
28595641-G-GA 26449494-G-GA 9×A**
3563050-A-G 3695009-A-G **
3563017-A-T 3694976-A-T **
4936081-T-G 5068040-T-G **
13325243-G-C 11169567-G-C **
13278499-A-T 11122823-A-T **
26500451-A-C 24354304-A-C FGC29871 P1_Y1 23×AC**
25609218-T-A 23463071-T-A P1_gr1 **
21848318-GA-G 19686432-GA-G 8×A**
13290707-G-A 11135031-G-A **
14565205-A-C 12453405-A-C **
9340831-A-AACAC 9503222-A-AACAC 22×AC**
21032613-G-T 18870727-G-T **
13242241-CTTTTTTT-C 11086565-CTTTTTTT-C 21×T**
9936880-AAAAT-A 10099271-AAAAT-A **
4177137-TACAC-T 4309096-TACAC-T 18×AC**
6055335-C-CA 6187294-C-CA **
13287963-T-TTCTC 11132287-T-TTCTC **
15308826-T-TACACAC 13196928-T-TACAC 20×AC**
5949375-A-AAAAAAC 6081334-A-AAAAAAC 4×AAAAAC**
13255597-G-GA 11099921-G-GA **
13296452-C-A 11140776-C-A **
13287961-T-TTCTC 11132285-T-TTCTC ***
24895124-G-T 22748977-G-T g1 ***
24921483-T-C 22775336-T-C g1 ***
24960637-C-T 22814490-C-T g1 ***
3563046-GGAGA-CGAGG 3695005-GGAGA-CGAGG ***
25138147-C-G 22992000-C-G g1 ***
10032058-T-TTTTCCCTTC 10194449-T-TTTTCCCTTC ***
25305480-A-G 23159333-A-G P2_r1 ***
25309943-T-C 23163796-T-C P2_r1 ***
25532855-C-A 23386708-C-A P1_gr1 ***
25604867-G-T 23458720-G-T P1_gr1 ***
58895325-A-T 56695546-T-A ***
25201020-AAGAAAGAAAG-A 23054873-AAGAAAGAAAG-A g1 ***
24871844-T-C 22725697-T-C P3_b2 ***
58895319-G-A 56695552-C-T ***
25201028-AAG-A 23054881-AAG-A g1 ***
9992151-TA-T 10154542-TA-T ***
22293137-T-C 20131251-T-C DYZ19 ***
22293167-C-T 20131281-C-T DYZ19 ***
22297770-C-A 20135884-C-A DYZ19 ***
22341712-T-G 20179826-T-G DYZ19 ***
22341906-C-A 20180020-C-A DYZ19 ***
23243724-G-C 21081838-G-C ***
24587703-T-G 22441556-T-G P3_t2 ***
23243749-G-C 21081863-G-C ***
24071041-T-C 21924894-T-C P3_b1 ***
24535176-T-C 22389029-T-C P3_t2 ***
24535187-A-C 22389040-A-C P3_t2 ***
24539474-T-C 22393327-T-C P3_t2 ***
24539483-G-C 22393336-G-C P3_t2 ***
25626271-G-A 23480124-G-A P1_b3 ***
25698426-A-G 23552279-A-G P1_b3 ***
19436748-G-GAA 17324868-G-GAA ***
58844949-T-C 56745922-A-G ***
22286472-A-G 20124586-A-G DYZ19 ***
26215151-T-A 24069004-T-A P1_Y1 ***
26410001-C-A 24263854-C-A P1_Y1 ***
58869006-C-G 56721865-G-C ***
26419312-C-T 24273165-C-T P1_Y1 ***
26629841-C-T 24483694-C-T P1_g2 ***
26671570-T-C 24525423-T-C P1_g2 ***
26153645-T-C 24007498-T-C P1_Y1 ***
27263437-A-G 25117290-A-G P1_g3 ***
27517611-A-G 25371464-A-G P1_Y2 ***
58837903-A-C 56752968-T-G ***
28720164-A-G 26574017-A-G ***
27755923-G-T 25609776-G-T P1_Y2 ***
27782416-C-G 25636269-C-G P1_Y2 ***
27837968-C-T 25691821-C-T P1_Y2 ***
13287967-C-CTCTT 11132291-C-CTCTT ***
58869572-A-G 56721299-T-C ***
58895125-G-T 56695746-C-A ***
25899684-T-G 23753537-T-G P1_Y1 ***
27872317-G-T 25726170-G-T P1_Y2 ***
19187446-CT-C 17075566-CT-C 34×T***
25749289-C-A 23603142-C-A P1_b3 ***
25845193-A-T 23699046-A-T P1_b3 ***
25898770-G-T 23752623-G-T P1_Y1 ***
17926534-C-CA 15814654-C-CA 25×A***
58875449-C-A 56715422-G-T ***
26089816-T-G 23943669-T-G P1_Y1 ***
25971926-T-C 23825779-T-C P1_Y1 ***
14866152-T-TGTGG 12754222-T-TGTGG ***
58875175-G-C 56715696-C-G ***
58872278-T-A 56718593-A-T ***
26089809-T-C 23943662-T-C P1_Y1 ***
13661304-T-TGGAAC 11505628-T-TGGAAC ***
26032764-C-T 23886617-C-T P1_Y1 ***
22812629-CT-C 20650743-CT-C 28×T***
22266599-G-C 20104713-G-C DYZ19 ***
10037922-A-G 10200313-A-G ***
22292645-C-G 20130759-C-G DYZ19 ***
13286403-T-C 11130727-T-C ***
13286401-A-C 11130725-A-C ***
58883337-C-T 56707534-G-A ***
13746557-A-C 11590881-A-C ***
13286454-A-C 11130778-A-C ***
10025139-A-C 10187530-A-C ***
10037877-G-GC 10200268-G-GC ***
13353860-G-C 11198184-G-C FGC49070 ***
13353812-AAT-A 11198136-AAT-A ***
10028234-T-G 10190625-T-G ***
10028243-T-G 10190634-T-G ***
13321953-G-A 11166277-G-A ***
10028213-T-CTGGC 10190604-T-CTGGC ***
10037927-TTA-ATC 10200318-TTA-ATC ***
10037935-TGA-CGG 10200326-TGA-CGG ***
4707512-C-CA 4839471-C-CA 18×A***
13740668-G-A 11584992-G-A ***
10032046-TTTT-ATTA 10194437-TTTT-ATTA ***
24535184-G-C 22389037-G-C P3_t2 ***
58895124-T-A 56695747-A-T ***
13397626-A-G 11241950-A-G ***
9992167-C-A 10154558-C-A ***
13223572-A-G 11067896-A-G ***
13286507-A-G 11130831-A-G Z8965 ***
28253537-G-A 26107390-G-A P1_b4 ***
28253545-G-A 26107398-G-A P1_b4 ***
18465454-C-A 16353574-C-A P6_Dst ***
25200847-C-G 23054700-C-G g1 15×AAAG***
10028169-T-C 10190560-T-C ***
21435115-GA-G 19273229-GA-G 14×A***
13746483-T-C 11590807-T-C ***
13255621-T-G 11099945-T-G ***
10025080-T-C 10187471-T-C ***
13296701-A-T 11141025-A-T ***
13325254-T-A 11169578-T-A ***
13296314-CT-TC 11140638-CT-TC ***
58828125-ATAGAT-TTACAG 56762741-ATCTAT-CTGTAA ***
13312442-CCTTT-ACTTC 11156766-CCTTT-ACTTC ***
22366228-GTTAC-TTTAA 20204342-GTTAC-TTTAA DYZ19 ***
22235666-C-T 20073780-C-T DYZ19 ***
19610169-C-T 17498289-C-T P5_Prx ***
15233804-C-A 13121890-C-A ***
16443772-G-A 14331892-G-A ***
17994582-G-A 15882702-G-A P7_Prx ***
18008308-C-A 15896428-C-A P7_Dst ***
18291660-A-G 16179780-A-G P6_Prx ***
18511194-T-A 16399314-T-A P6_Dst ***
18957040-A-G 16845160-A-G ***
19387725-A-G 17275845-A-G ***
19753455-A-G 17641575-A-G P5_Prx ***
13740722-G-A 11585046-G-A ***
19758706-A-C 17646826-A-C P5_Prx ***
19775491-G-T 17663611-G-T P5_Prx ***
20006291-T-C 17894411-T-C P5_Prx ***
20143299-G-T 18031419-G-T P5_Dst ***
20213425-A-C 18051539-A-C P5_Dst ***
20409794-A-G 18247908-A-G P5_Dst ***
20535350-T-C 18373464-T-C P5_Dst ***
21031144-T-G 18869258-T-G P4_Dst ***
14087561-T-A 11966855-T-A ***
13339472-T-A 11183796-T-A ***
13299935-C-T 11144259-C-T ***
5637335-T-A 5769294-T-A ***
13312534-T-G 11156858-T-G ***
5073558-C-T 5205517-C-T ***
19127703-C-A 17015823-C-A ***
3395678-A-G 3527637-A-G ***
4390998-G-A 4522957-G-A ***
4787825-T-C 4919784-T-C ***
5043104-G-T 5175063-G-T ***
5073579-C-T 5205538-C-T ***
5936107-C-A 6068066-C-A ***
10032076-T-G 10194467-T-G ***
6202110-A-T 6334069-A-T IR3_Dst ***
6310333-C-A 6442292-C-A IR3_Dst ***
6329063-A-G 6461022-A-G IR3_Dst ***
7488283-G-T 7620242-G-T IR1_L ***
9040879-C-G 9203270-C-G ***
9040888-A-G 9203279-A-G ***
9429342-A-G 9591733-A-G ***
9782800-T-C 9945191-T-C ***
27862570-G-GAT 25716423-G-GAT P1_Y2 ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

Kit: Y7R6V16064111102221048326634
Used in age calculations16064111102221048326634
Counts of SNPs117
Variant counts last updated 2017-12-16 19:37:24.

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