Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > ZZ10 > Z253 > Z2534 > ZZ5 > Z2185 > Z2186 > L1066

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
B76592
BigY2
B76592
13687806-C-A 11532130-C-A A*
13451432-T-C 11295756-T-C A*
19787197-C-T 17675317-C-T P5_Prx ***A*
19759684-C-T 17647804-C-T P5_Prx ***A*
19852918-G-C 17741038-G-C P5_Prx ***A*
26453101-T-C 24306954-T-C P1_Y1 ***A*
13451424-C-T 11295748-C-T A*
28817713-C-A 26671566-C-A A*
28793481-G-T 26647334-G-T A*
2827877-T-A 2959836-T-A YY++
8328006-C-T 8459965-C-T YY++
8168143-A-G 8300102-A-G YY++
6370732-T-C 6502691-T-C ++
2831191-G-A 2963150-G-A YY++
19815647-T-A 17703767-T-A P5_Prx +
22362299-A-T 20200413-A-T DYZ19 ++
22460735-A-T 20298849-A-T DYZ19 ++
9041470-T-C 9203861-T-C Y++
23044049-T-G 20882163-T-G YY++
23882736-G-C 21720850-G-C Y+
8645780-G-A 8777739-G-A YY++
22293639-C-A 20131753-C-A DYZ19 ***+
13227650-TAC-T 11071974-TAC-T **+
16527729-C-T 14415849-C-T YY++
19202509-A-C 17090629-A-C YY++
18804590-G-A 16692710-G-A YY++
18519015-T-C 16407135-T-C P6_Dst ++
13651548-C-A 11495872-C-A ++
9995456-G-A 10157847-G-A Y+
22060576-T-C 19898690-T-C YY++
17712195-C-G 15600315-C-G YY++
21164217-T-C 19002331-T-C YY++
14708266-T-A 12596332-T-A YY++
15415759-A-AC 13303879-A-AC ++
17223343-GT-G 15111463-GT-G 9×T++
3406410-A-G 3538369-A-G ****
10657314-G-T *
22277021-TC-T 20115135-TC-T DYZ19 ****
22237908-C-T 20076022-C-T DYZ19 ****
13452873-GCATTCCATTC-G 11297197-GCATTCCATTC-G 14×CATTC*
22230031-C-A 20068145-C-A DYZ19 ****
22289115-G-C 20127229-G-C DYZ19 ****
22281720-A-T 20119834-A-T DYZ19 ****
22253898-A-G 20092012-A-G DYZ19 ****
10903723-A-C **
10900845-A-C **
10899470-A-C **
10899453-G-T **
10887730-A-C **
10887755-A-C **
10900852-T-C **
5125158-C-G 5257117-C-G **
10884709-C-T **
10792653-C-T **
10805214-G-C **
10798029-C-G **
10798015-CA-C **
10797997-T-C **
10797192-C-A **
10795927-A-T **
10792659-A-C **
10792596-T-C **
10806216-A-C **
10792486-G-C **
10780468-C-T **
10772536-C-A **
10749702-C-A **
10749350-T-G **
10692612-C-A **
10691937-C-A **
10678629-A-T **
10806214-G-C **
10806246-T-C **
10883648-A-G **
10856447-C-A **
10867924-C-T **
10866169-C-T **
10865983-A-T **
10860372-A-C **
10860367-A-C **
10858127-ACTTTC-A **
10858123-C-T **
10856477-C-T **
10852129-A-C **
10806247-A-T **
10850605-C-G **
10850590-C-G **
10836487-T-A **
10827124-A-C **
10820703-C-A **
10820702-T-C **
10806254-T-C **
10806252-C-T **
10866162-C-G **
10924623-A-G **
10678591-TCCA-T **
13520581-T-G 11364905-T-G **
13228103-A-T 11072427-A-T **
13234964-C-G 11079288-C-G **
13239834-G-T 11084158-G-T **
13244754-T-C 11089078-T-C **
13253469-C-T 11097793-C-T **
13292403-A-T 11136727-A-T **
13298710-C-A 11143034-C-A **
13306211-T-G 11150535-T-G **
13307679-C-A 11152003-C-A **
13316986-C-G 11161310-C-G **
13320906-C-A 11165230-C-A **
13461575-G-C 11305899-G-C **
13491054-C-A 11335378-C-A **
13496544-T-G 11340868-T-G **
13553966-A-G 11398290-A-G **
13213335-A-T 11057659-A-T **
11650937-G-T **
13898585-G-T 11777879-G-T **
11670304-A-G **
11669675-T-G **
11663893-C-A **
11659643-A-T **
11659424-T-G **
11645923-G-A **
13556883-G-T 11401207-G-T **
13642978-T-G 11487302-T-G **
13637872-T-A 11482196-T-A **
13571618-C-T 11415942-C-T **
13564596-T-G 11408920-T-G **
13564571-T-G 11408895-T-G **
13558293-C-A 11402617-C-A **
13223457-A-G 11067781-A-G **
13212728-C-A 11057052-C-A **
10925420-A-C **
10983199-T-C **
10928706-T-A **
10928780-A-G **
10929093-C-A **
10938806-C-A **
10938853-C-A **
10943177-C-A **
10943856-A-C **
10944356-A-C **
10950678-A-C **
10950827-A-C **
10954230-C-A **
10960303-A-T **
10969082-A-C **
10973070-T-A **
10986494-C-A **
13205579-CAA-C 11049903-CAA-C 17×A**
11015016-A-T **
11035304-C-A **
11031225-C-A **
11020473-T-G **
11020454-A-G **
11019124-C-A **
11017288-C-A **
11015000-C-T **
10990096-C-CGCTCA **
11014584-G-T **
11013827-C-G **
11007850-G-T **
10998961-G-T **
10998956-A-T **
10990115-C-T **
10678596-TCC-T **
9171214-A-T 9333605-A-T **
10663660-T-TCCACC **
6918490-T-A 7050449-T-A **
6464808-C-A 6596767-C-A **
6520197-C-A 6652156-C-A **
6542832-A-T 6674791-A-T **
6646823-A-G 6778782-A-G **
6664712-T-C 6796671-T-C **
6698895-C-A 6830854-C-A **
6699170-C-A 6831129-C-A **
6772244-G-A 6904203-G-A **
6822493-TG-T 6954452-TG-T **
6829433-C-A 6961392-C-A **
6892165-C-A 7024124-C-A **
6918396-C-T 7050355-C-T **
6930702-C-T 7062661-C-T **
6354080-C-A 6486039-C-A **
6934730-GGC-G 7066689-GGC-G **
6954864-C-A 7086823-C-A **
7031118-G-A 7163077-G-A **
7094496-C-A 7226455-C-A **
7109327-C-T 7241286-C-T **
7115453-C-A 7247412-C-A **
7132833-C-A 7264792-C-A **
7160507-T-C 7292466-T-C **
7181872-G-A 7313831-G-A **
7181888-T-A 7313847-T-A **
7185255-C-A 7317214-C-A **
7218194-T-G 7350153-T-G **
7224331-C-A 7356290-C-A **
6354215-G-T 6486174-G-T **
6353769-G-T 6485728-G-T **
7240909-G-C 7372868-G-C **
5810346-A-T 5942305-A-T **
5489820-C-G 5621779-C-G **
5537812-C-A 5669771-C-A **
5570005-T-A 5701964-T-A **
5576753-A-T 5708712-A-T **
5620741-C-A 5752700-C-A **
5755921-C-A 5887880-C-A **
5755940-A-C 5887899-A-C **
5781890-C-A 5913849-C-A **
5785653-CT-C 5917612-CT-C **
5796810-C-A 5928769-C-A **
5796829-C-A 5928788-C-A **
5807091-G-T 5939050-G-T **
5817419-C-A 5949378-C-A **
6167949-T-G 6299908-T-G IR3_Dst **
5818650-C-A 5950609-C-A **
5836320-G-A 5968279-G-A **
5842768-A-G 5974727-A-G **
5842791-T-G 5974750-T-G **
5851930-T-G 5983889-T-G **
5854553-T-G 5986512-T-G **
5854565-TC-A 5986524-TC-A **
5873556-C-T 6005515-C-T **
5897217-G-T 6029176-G-T **
5937038-C-A 6068997-C-A **
6090200-C-A 6222159-C-A **
6090323-G-T 6222282-G-T **
6096800-C-A 6228759-C-A **
7236496-T-G 7368455-T-G **
7248134-C-A 7380093-C-A **
10661051-C-T **
9498020-G-T 9660411-G-T **
9119501-G-T **
8977936-C-G 9140327-C-G **
8981330-C-A 9143721-C-A **
9040283-G-A 9202674-G-A **
9047134-G-T 9209525-G-T **
9070142-T-G 9232533-T-G **
9078722-T-C 9241113-T-C **
9079180-G-T 9241571-G-T **
9082198-G-GC 9244589-G-GC 8×C**
9140150-C-A 9302541-C-A **
13899367-CT-C 11778661-CT-C **
9171225-C-A 9333616-C-A **
9502449-G-T 9664840-G-T **
9108022-C-A **
9502485-G-A 9664876-G-A **
9629490-A-T 9791881-A-T IR3_Prx **
9768157-G-T 9930548-G-T **
9805036-A-G 9967427-A-G **
9822725-TG-T 9985116-TG-T **
9925231-C-T 10087622-C-T **
9937819-G-T 10100210-G-T **
10023658-CTG-C 10186049-CTG-C **
10023666-T-C 10186057-T-C **
10023684-C-G 10186075-C-G **
10057343-A-G 10219734-A-G **
10059441-T-C 10221832-T-C **
10656347-C-A **
9110341-C-A **
9107973-T-G **
7277610-C-A 7409569-C-A **
7642948-C-A 7774907-C-A **
7281013-C-A 7412972-C-A **
7299175-A-C 7431134-A-C **
7310509-C-A 7442468-C-A **
7335820-C-T 7467779-C-T **
7359695-C-A 7491654-C-A **
7370483-G-T 7502442-G-T **
7462603-G-T 7594562-G-T IR1_L **
7467900-T-G 7599859-T-G IR1_L **
7470581-T-A 7602540-T-A IR1_L **
7470582-G-A 7602541-G-A IR1_L **
7504955-C-A 7636914-C-A IR1_L **
7507084-C-T 7639043-C-T **
7532303-TATATATATATATATATATATATATATATATG-T 7664262-TATATATATATATATATATATATATATATATG-T **
7650586-T-G 7782545-T-G **
8901985-C-T 9033944-C-T **
7918280-G-T 8050239-G-T **
7970283-A-C 8102242-A-C **
7984476-C-A 8116435-C-A **
8076839-T-C 8208798-T-C **
8094635-A-T 8226594-A-T **
8218259-C-A 8350218-C-A **
8428943-GCAAAAA-G 8560902-GCAAAAA-G **
8658428-C-A 8790387-C-A **
8672985-C-A 8804944-C-A **
8697440-C-A 8829399-C-A **
8733263-C-A 8865222-C-A **
8807506-T-G 8939465-T-G **
8807637-A-C 8939596-A-C **
6920-A-G **
14385502-G-A 12264798-G-A **
13901233-G-T 11780527-G-T **
20793476-ATA-C 18631590-ATA-C P4_Prx **
19460117-T-A 17348237-T-A **
19479812-T-A 17367932-T-A **
19506963-T-C 17395083-T-C **
19532655-G-T 17420775-G-T **
19547640-A-G 17435760-A-G **
19610249-C-G 17498369-C-G P5_Prx **
20025412-T-TCTCTCTC 17913532-T-TCTCTCTC P5_Prx **
20078759-A-C 17966879-A-C P5_Dst **
20334773-G-T 18172887-G-T P5_Dst **
20352207-A-C 18190321-A-C P5_Dst **
20438798-A-G 18276912-A-G P5_Dst **
20569382-G-T 18407496-G-T P5_Dst **
20802905-T-G 18641019-T-G P4_Gap **
19388301-T-C 17276421-T-C **
20842457-A-C 18680571-A-C P4_Dst **
20842496-G-T 18680610-G-T P4_Dst **
21037441-T-A 18875555-T-A **
21042856-C-A 18880970-C-A **
21087203-C-A 18925317-C-A **
21148562-C-A 18986676-C-A **
21208875-C-A 19046989-C-A **
21211823-G-A 19049937-G-A **
21238173-G-C 19076287-G-C **
21394293-C-T 19232407-C-T **
21426990-A-G 19265104-A-G **
21462590-C-A 19300704-C-A **
21488610-A-G 19326724-A-G **
19391116-TGA-T 17279236-TGA-T **
19379443-C-A 17267563-C-A **
21678185-C-A 19516299-C-A **
18688445-G-T 16576565-G-T **
17667015-G-A 15555135-G-A **
17685792-C-A 15573912-C-A **
17928990-C-A 15817110-C-A **
18042903-G-T 15931023-G-T **
18134481-C-G 16022601-C-G **
18136038-G-C 16024158-G-C **
18154566-T-C 16042686-T-C **
18188353-C-A 16076473-C-A **
18256168-G-T 16144288-G-T **
18540096-A-G 16428216-A-G **
18540190-G-T 16428310-G-T **
18688443-G-T 16576563-G-T **
18688455-G-T 16576575-G-T **
19293695-C-T 17181815-C-T **
18695901-T-C 16584021-T-C **
18779243-G-C 16667363-G-C **
18926836-G-C 16814956-G-C **
18932450-T-C 16820570-T-C **
19067970-C-A 16956090-C-A **
19097280-G-T 16985400-G-T **
19121813-C-T 17009933-C-T **
19187418-TTCCTG-T 17075538-TTCCTG-T **
19187446-C-G 17075566-C-G 34×T**
19248246-C-A 17136366-C-A **
19251570-C-A 17139690-C-A **
19293655-T-C 17181775-T-C **
19293681-G-A 17181801-G-A **
21489147-T-A 19327261-T-A **
21681355-T-G 19519469-T-G **
17648622-C-T 15536742-C-T **
28464008-A-C 26317861-A-C **
24269711-T-TAA 22123564-T-TAA P3_b1 **
24363651-G-T 22217504-G-T **
24466219-C-A 22320072-C-A **
24634128-T-C 22487981-T-C P3_t2 **
25521507-T-C 23375360-T-C P1_gr1 **
26284875-A-G 24138728-A-G P1_Y1 **
26565441-C-T 24419294-C-T P1_g2 **
27791916-T-C 25645769-T-C P1_Y2 **
27791922-T-C 25645775-T-C P1_Y2 **
27842368-G-A 25696221-G-A P1_Y2 9×A**
27887001-C-CCT 25740854-C-CCT P1_Y2 **
27982096-C-A 25835949-C-A P1_Y2 **
28496956-A-C 26350809-A-C **
23983478-A-T 21837331-A-T **
28547364-C-A 26401217-C-A **
28548611-C-A 26402464-C-A **
28555209-A-G 26409062-A-G **
28607742-T-C 26461595-T-C **
28610089-C-T 26463942-C-T **
28661879-A-T 26515732-A-T **
28693042-AATATTTGAGG-A 26546895-AATATTTGAGG-A **
28728422-G-T 26582275-G-T **
28734900-T-C 26588753-T-C **
28734940-A-G 26588793-A-G **
28774499-G-T 26628352-G-T **
28774732-T-G 26628585-T-G **
56685524-T-C **
24241119-C-T 22094972-C-T P3_b1 **
23953131-C-A 21806984-C-A **
21834215-G-T 19672329-G-T **
22537021-T-A 20375135-T-A **
21880885-T-A 19718999-T-A **
21887465-T-C 19725579-T-C **
21887497-G-A 19725611-G-A **
21993874-T-G 19831988-T-G **
21996468-C-A 19834582-C-A **
22008267-C-A 19846381-C-A **
22124219-G-T 19962333-G-T **
22169277-C-A 20007391-C-A **
22194989-T-G 20033103-T-G **
22202592-A-C 20040706-A-C **
22316224-C-G 20154338-C-G DYZ19 **
22536935-A-G 20375049-A-G **
22602392-C-A 20440506-C-A **
23818614-C-G 21656728-C-G **
22666153-C-A 20504267-C-A **
22739618-G-T 20577732-G-T **
22767468-A-C 20605582-A-C **
22768201-G-T 20606315-G-T **
22811025-C-A 20649139-C-A **
23204448-A-C 21042562-A-C **
23337189-C-A 21175303-C-A **
23337199-T-A 21175313-T-A **
23338331-T-G 21176445-T-G **
23425417-C-A 21263531-C-A **
23447361-C-A 21285475-C-A **
23609282-G-T 21447396-G-T **
23801757-A-AT 21639871-A-AT **
17648629-C-A 15536749-C-A **
17618426-C-A 15506546-C-A **
13911959-G-T 11791253-G-T **
15193704-T-A 13081790-T-A **
14586184-C-A 12474384-C-A **
14694697-C-A 12582763-C-A **
14719702-G-T 12607770-G-T **
14769295-C-G 12657364-C-G **
14912073-T-A 12800140-T-A **
14988888-C-A 12876954-C-A **
15061683-C-T 12949775-C-T **
15068883-G-T 12956974-G-T **
15104856-C-A 12992944-C-A **
15115480-C-T 13003567-C-T **
15171325-T-C 13059411-T-C **
15189591-C-A 13077677-C-A **
15202413-A-T 13090499-A-T **
14539596-C-A 12427797-C-A **
15252842-T-C 13140928-T-C 10×A**
15259228-T-C 13147312-T-C **
15334888-TA-T 13223006-TA-T **
15366980-C-A 13255100-C-A **
15412807-C-A 13300927-C-A **
15542680-T-A 13430800-T-A **
15616660-A-G 13504780-A-G **
15647836-C-A 13535956-C-A **
15687745-C-A 13575865-C-A **
15698512-A-G 13586632-A-G **
15711998-C-A 13600118-C-A **
15728785-A-C 13616905-A-C **
15742384-C-A 13630504-C-A **
14571245-C-A 12459445-C-A **
14537763-C-A 12425964-C-A **
15773573-C-A 13661693-C-A **
14295583-T-C 12174877-T-C **
13931590-C-A 11810884-C-A **
13938764-C-A 11818058-C-A **
13939117-A-C 11818411-A-C **
13961785-A-G 11841079-A-G **
13994953-G-T 11874247-G-T **
14007505-A-C 11886799-A-C **
14142974-T-C 12022268-T-C **
14181002-T-G 12060296-T-G **
14225663-A-C 12104957-A-C **
14230128-C-A 12109422-C-A **
14241718-G-T 12121012-G-T **
14261562-CG-C 12140856-CG-C **
14295670-G-T 12174964-G-T **
14524107-T-G 12412308-T-G **
14296954-G-A 12176248-G-A **
14324387-A-C 12203681-A-C **
14344051-C-T 12223346-C-T **
14357901-T-G 12237196-T-G **
14379193-C-A 12258489-C-A **
5446352-C-A 5578311-C-A **
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13856765-A-AT 11736059-A-AT ***
17527438-GTA-G 15415558-GTA-G 18×TA***
13814092-G-A 11693386-G-A ***
21750902-G-T ***
19010503-G-A 16898623-G-A ***
5022128-GA-G 5154087-GA-G 11×A***
25995068-C-A 23848921-C-A P1_Y1 ***
23310697-C-A 21148811-C-A ***
13809089-G-C 11688383-G-C ***
10033461-G-C 10195852-G-C ***
10033466-C-T 10195857-C-T ***
10033462-G-A 10195853-G-A ***
10006148-C-T 10168539-C-T ***
13143784-GCACTGCACAT-CCACTGAAATC,G 10633270-GCACTGCACAT-CCACTGAAATC,G ***
13465378-T-C 11309702-T-C ***
21394664-C-A 19232778-C-A ***
13828834-T-A 11708128-T-A ***
22361386-TT-G 20199500-TT-G DYZ19 ***
22902100-T-A 20740214-T-A ***
17895175-ATTTTTTT-A 15783295-ATTTTTTT-A 21×T***
21625280-C-A 19463394-C-A ***
13926862-C-T 11806156-C-T ***
25995054-T-C 23848907-T-C P1_Y1 ***
19187412-TTG-T,TT 17075532-TTG-T,TT ***
5603542-C-A 5735501-C-A ***
10893698-C-A ***
23773369-CAC-C,CAT 21611483-CAC-C,CAT ***
10900237-C-T ***
56861769-G-T ***
17720989-C-A 15609109-C-A ***
7058034-G-T 7189993-G-T ***
7401140-ATT-A,AT 7533099-ATT-A,AT 14×T***
7269630-TTTGC-T 7401589-TTTGC-T ***
10924711-G-GCCATT ***
10825305-C-T ***
19346433-C-CCTTT,CCTTTCTTT 17234553-C-CCTTT,CCTTTCTTT 15×CTTT***
18565051-G-A 16453171-G-A ***
13503526-TAT-T,TAC 11347850-TAT-T,TAC ***
22812658-A-T 20650772-A-T ***
11649376-T-A,TGGGCT ***
11663644-A-G ***
22524902-C-A 20363016-C-A ***
10825299-C-A ***
10812394-G-T ***
24314207-C-A 22168060-C-A P3_t1 ***
5524551-G-A 5656510-G-A ***
13655627-A-G 11499951-A-G ***
4969644-G-T 5101603-G-T ***
4470337-C-A 4602296-C-A ***
3991944-A-G 4123903-A-G ***
6226034-TTCTT-T,TTCTA 6357993-TTCTT-T,TTCTA IR3_Dst ***
22812658-ACTG-A 20650772-ACTG-A ***
10746905-TTCAAC-T,TTCTAC ***
10825286-A-G ***
8675047-C-A 8807006-C-A ***
8835193-T-C 8967152-T-C ***
17479883-C-A 15368003-C-A ***
9068943-G-T 9231334-G-T ***
9173394-C-A 9335785-C-A ***
13926854-C-A 11806148-C-A ***
21211875-C-A 19049989-C-A ***
15396762-C-A 13284882-C-A ***
15279206-GTT-G 13167305-GTT-G 13×T***
9852914-A-AAAGGAAGGAAGG 10015305-A-AAAGGAAGGAAGG 17×AAGG***
8109789-GTTA-G 8241748-GTTA-G 7×TTA***
18817019-C-A 16705139-C-A 10×TAAA***
15581093-C-CT 13469213-C-CT 16×T***
15158581-C-A 13046667-C-A ***
11014349-T-C ***
10909712-C-A ***
10909702-T-A ***
10909688-G-A ***
10909687-G-A ***
10763316-C-CACTGT ***
17375425-C-T 15263545-C-T ***
6867676-A-T 6999635-A-T ***
10763407-C-AA ***
10763403-T-G ***
19130721-C-A 17018841-C-A ***
7939736-C-A 8071695-C-A ***
13488778-C-T 11333102-C-T ***
10825276-A-G ***
10935514-TTCCAC-T ***
10987835-ATTCC-A ***
17355510-GA-G,GAA 15243630-GA-G,GAA 12×A***
4244622-ATT-A,AT 4376581-ATT-A,AT 16×T***
13193942-AAATAAT-A,AAAT ***
22996045-G-T 20834159-G-T ***
15677505-CAAAAA-C 13565625-CAAAAA-C 16×A***
2825219-G-T 2957178-G-T ***
16823950-T-A 14712070-T-A ***
15158611-G-GAAA 13046697-G-GAAA 15×A***
15161168-A-G 13049254-A-G ***
10938732-T-G ***
11003752-C-A ***
10825274-G-A ***
17254472-C-T 15142592-C-T ***
15776011-A-G 13664131-A-G ***
9541021-CT-C 9703412-CT-C IR3_Prx 9×T***
21946821-C-A 19784935-C-A ***
56826968-T-TTGGCATTCCA ***
15173496-TAA-T 13061582-TAA-T 11×A***
11003735-C-T ***
16823942-G-C 14712062-G-C ***
17208316-C-A 15096436-C-A ***
21130587-C-CAAAT 18968701-C-CAAAT 11×AAAT***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: B765921079999078484607935284
Kit: B76592988149880077387880478
Used in age calculations1079999080077387935284
Counts of SNPs1315
Variant counts last updated 2018-01-24 22:54:47.



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