Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > DF49/S474 > Z2980 > Z2976 > DF23 > Z2961 > M222 > DF106 > DF104 > DF105 > A259 > Y19870 > BY13838 > 22470401-G-A > A884

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
409605
BigY2
409605
23720109-A-AT 21558223-A-AT ***A*
14053778-T-C 11933072-T-C Y**+
15725048-G-A 13613168-G-A YY++
30378-C-T **
14592108-A-G 12480308-A-G **
14511912-C-G 12400117-C-G **
14537612-C-A 12425813-C-A **
14549306-T-C 12437507-T-C **
14550803-G-T 12439004-G-T **
14558361-G-T 12446562-G-T **
14558474-G-T 12446675-G-T **
14561651-C-A 12449852-C-A **
14562308-C-A 12450509-C-A **
14648738-T-C 12536803-T-C **
14495773-T-C 12383970-T-C **
14649537-G-T 12537602-G-T **
14649559-G-T 12537624-G-T **
14688607-C-A 12576673-C-A **
14689943-C-A 12578009-C-A **
14743168-AAAAAAG-A 12631236-AAAAAAG-A **
14743832-T-A 12631901-T-A **
14757330-C-G 12645399-C-G **
14784725-A-G 12672795-A-G **
14807408-T-A 12695479-T-A **
14908512-C-A 12796579-C-A **
14931963-G-T 12820028-G-T **
14934291-C-A 12822356-C-A **
14499415-A-G 12387620-A-G **
14495705-T-G 12383902-T-G **
14986145-C-A 12874213-C-A **
14267040-C-A 12146334-C-A **
14042736-A-G 11922030-A-G **
14042741-C-T 11922035-C-T **
14042754-A-T 11922048-A-T **
14073628-C-A 11952922-C-A **
14077925-C-A 11957219-C-A **
14128221-C-A 12007515-C-A **
14155802-T-C 12035096-T-C **
14155883-T-G 12035177-T-G **
14159619-G-T 12038913-G-T **
14191286-G-A 12070580-G-A **
14213890-A-G 12093184-A-G **
14285813-A-G 12165107-A-G **
14495699-G-A 12383896-G-A **
14308247-C-G 12187541-C-G **
14324409-C-A 12203703-C-A **
14328364-C-A 12207658-C-A **
14357830-A-G 12237125-A-G **
14366258-A-C 12245553-A-C **
14379096-C-A 12258392-C-A **
14384662-C-A 12263958-C-A **
14396408-T-A 12275704-T-A **
14401958-G-C 12281255-G-C **
14432341-T-C 12311614-T-C **
14458450-G-ACTC 12337723-G-ACTC **
14483566-A-C 12362835-A-C **
14977360-C-A 12865435-C-A **
15161325-C-T 13049411-C-T **
15034781-T-C 12922869-T-C **
16060491-T-G 13948611-T-G **
15924136-C-A 13812256-C-A **
15928392-TTTTTTG-T 13816512-TTTTTTG-T **
15987343-C-T 13875463-C-T **
16037354-A-T 13925474-A-T **
16056863-C-T 13944983-C-T **
16056866-A-G 13944986-A-G **
16056885-G-T 13945005-G-T **
16056886-G-A 13945006-G-A **
16056889-T-C 13945009-T-C **
16056894-C-A 13945014-C-A **
16056900-G-A 13945020-G-A **
16071120-T-C 13959240-T-C **
15844807-T-C 13732927-T-C **
16071130-T-C 13959250-T-C **
16266015-T-C 14154135-T-C **
16271147-C-A 14159267-C-A **
16277934-G-T 14166054-G-T **
16278542-C-T 14166662-C-T **
16320373-A-C 14208493-A-C **
16336917-TTTTG-T 14225037-TTTTG-T **
16422474-C-A 14310594-C-A **
16520776-G-A 14408896-G-A **
16575150-A-T 14463270-A-T **
16602867-C-G 14490987-C-G **
15909456-C-A 13797576-C-A **
15776941-T-G 13665061-T-G **
15161313-AAG-A 13049399-AAG-A **
15363933-G-A 13252053-G-A **
13972957-AC-A 11852251-AC-A **
15171336-C-A 13059422-C-A **
15177658-G-T 13065744-G-T **
15177659-A-C 13065745-A-C **
15177663-C-G 13065749-C-G **
15210707-C-A 13098793-C-A **
15276915-T-C 13165004-T-C **
15280480-T-C 13168579-T-C **
15363912-T-A 13252032-T-A **
15363920-C-T 13252040-C-T **
15363928-C-G 13252048-C-G **
15363947-C-G 13252067-C-G **
15761998-G-T 13650118-G-T **
15363968-G-A 13252088-G-A **
15363974-G-C 13252094-G-C **
15363977-G-T 13252097-G-T **
15363985-G-A 13252105-G-A **
15363996-C-G 13252116-C-G **
15391376-C-A 13279496-C-A **
15486167-T-G 13374287-T-G **
15494995-C-A 13383115-C-A **
15498186-T-C 13386306-T-C **
15556005-C-A 13444125-C-A **
15565512-C-A 13453632-C-A **
13993415-C-A 11872709-C-A **
13964460-CTGTG-C 11843754-CTGTG-C 13×TG**
13964648-G-T 11843942-G-T **
10927760-G-C **
10899100-C-A **
10899446-C-A **
10921362-A-T **
10921367-A-ACTC **
10921373-C-CAT **
10924241-T-C **
10925229-C-A **
10925606-T-C **
10927628-C-A **
10927705-TTTCCA-T **
10941554-C-A **
10889555-A-G **
10942815-T-A **
10942813-CTTCAT-C **
10942839-TCTATTCC-T **
10942849-T-AG **
10945752-T-A **
10956705-G-C **
10959667-T-C **
10959675-T-A **
10959676-A-T **
10959689-C-CAATTT **
10974069-C-A **
10898776-A-T **
10885078-A-ATCCC **
10974078-A-T **
10835438-G-C **
10780990-G-A **
10781148-A-C **
10787947-C-A **
10788268-C-A **
10791312-A-C **
10804482-T-C **
10805251-A-C **
10812536-C-A **
10819004-T-C **
10826261-C-T **
10828681-C-A **
10836141-C-A **
10880737-C-T **
10837369-C-A **
10842130-A-T **
10845862-G-T **
10850090-A-C **
10856444-C-T **
10856514-C-A **
10863031-C-A **
10873101-T-G **
10873114-A-C **
10874106-C-A **
10876654-T-C **
10974077-A-G **
10974079-G-A **
16623493-G-T 14511613-G-T **
11654417-T-A **
13586027-G-T 11430351-G-T **
13597143-G-T 11441467-G-T **
13597246-A-C 11441570-A-C **
13597278-T-C 11441602-T-C **
13597403-C-A 11441727-C-A **
13640010-G-A 11484334-G-A **
13640023-T-G 11484347-T-G **
13726108-T-C 11570432-T-C **
13726120-G-T 11570444-G-T **
11649849-C-A **
11652083-A-G **
11658892-C-T **
13573212-A-C 11417536-A-C **
11664301-A-G **
11675663-A-T **
13809248-G-T 11688542-G-T **
13847027-A-T 11726321-A-T **
13858558-T-C 11737852-T-C **
13884632-T-A 11763926-T-A **
13887450-G-T 11766744-G-T **
13893574-A-G 11772868-A-G **
13934842-C-A 11814136-C-A **
13945518-G-C 11824812-G-C **
13945520-A-C 11824814-A-C **
13579200-G-T 11423524-G-T **
13527219-G-T 11371543-G-T **
10984344-T-A **
13231566-G-T 11075890-G-T **
10985420-A-G **
10993190-A-C **
10995617-C-A **
11005026-C-T **
11008515-C-A **
11019339-C-A **
11025455-A-C **
11026145-C-T **
11030594-C-A **
13216400-A-C 11060724-A-C **
13217255-T-G 11061579-T-G **
13293439-C-A 11137763-C-A **
13523359-C-A 11367683-C-A **
13306239-A-T 11150563-A-T **
13306254-G-C 11150578-G-C **
13404434-T-C 11248758-T-C **
13433347-C-G 11277671-C-G **
13443952-C-A 11288276-C-A **
13460324-T-G 11304648-T-G **
13490519-C-A 11334843-C-A **
13491174-C-G 11335498-C-G **
13496233-C-A 11340557-C-A **
13502061-C-G 11346385-C-G **
13504750-G-T 11349074-G-T **
16612582-TACAC-T 14500702-TACAC-T 10×AC**
16739361-C-A 14627481-C-A **
16640361-G-T 14528481-G-T **
22787183-G-A 20625297-G-A **
22146379-G-A 19984493-G-A **
22164566-A-G 20002680-A-G **
22182981-A-G 20021095-A-G **
22204985-G-A 20043099-G-A **
22212028-A-G 20050142-A-G **
22541079-C-A 20379193-C-A **
22598277-G-A 20436391-G-A **
22613858-A-T 20451972-A-T **
22779060-A-T 20617174-A-T **
22783094-T-A 20621208-T-A **
23007153-C-A 20845267-C-A **
22128678-C-A 19966792-C-A **
23065675-A-G 20903789-A-G **
23190316-G-T 21028430-G-T **
23293626-A-G 21131740-A-G **
23345791-G-T 21183905-G-T **
23415357-T-TG 21253471-T-TG **
23438933-G-C 21277047-G-C **
23440649-T-G 21278763-T-G **
23459835-C-A 21297949-C-A **
23491105-T-G 21329219-T-G **
23519908-C-T 21358022-C-T **
23569512-C-A 21407626-C-A **
22133991-T-C 19972105-T-C **
22114439-A-T 19952553-A-T **
23623308-C-A 21461422-C-A **
21476520-A-G 19314634-A-G **
21371014-T-C 19209128-T-C **
21393267-A-G 19231381-A-G **
21394178-C-A 19232292-C-A **
21394688-C-G 19232802-C-G **
21464427-C-T 19302541-C-T **
21464449-C-G 19302563-C-G **
21464452-A-T 19302566-A-T **
21468147-C-A 19306261-C-A **
21469230-A-T 19307344-A-T **
21469236-C-T 19307350-C-T **
21469240-A-T 19307354-A-T **
21505554-C-T 19343668-C-T **
22091493-C-A 19929607-C-A **
21505570-C-T 19343684-C-T **
21555532-C-G 19393646-C-G **
21677063-G-A 19515177-G-A **
21823144-G-C 19661258-G-C **
21863720-C-A 19701834-C-A **
21891058-G-A 19729172-G-A **
21934661-C-T 19772775-C-T **
21939495-A-G 19777609-A-G **
21939622-C-G 19777736-C-G **
22011974-A-T 19850088-A-T **
22028739-C-A 19866853-C-A **
23603206-G-T 21441320-G-T **
23655815-G-T 21493929-G-T **
21296786-G-T 19134900-G-T **
28762700-C-A 26616553-C-A **
28585713-T-G 26439566-T-G **
28607978-C-A 26461831-C-A **
28613088-C-A 26466941-C-A **
28621850-G-A 26475703-G-A **
28645887-T-C 26499740-T-C **
28657114-T-A 26510967-T-A **
28714250-A-G 26568103-A-G **
28720227-C-A 26574080-C-A **
28726178-C-A 26580031-C-A **
28731475-C-A 26585328-C-A **
28756964-C-G 26610817-C-G **
56850418-T-C **
28547438-A-C 26401291-A-C **
56850424-A-G **
56858681-C-A **
56866815-C-A **
56876084-T-G **
56878916-G-T **
56884001-T-C **
56884017-A-C **
6931-A-T **
6934-T-C **
6936-A-C **
7043-A-G **
28549533-G-T 26403386-G-T **
28537709-T-C 26391562-T-C **
23790257-T-G 21628371-T-G **
24512471-C-A 22366324-C-A **
23875359-T-G 21713473-T-G **
24047632-A-T 21901485-A-T **
24242371-C-A 22096224-C-A P3_b1 **
24244651-G-T 22098504-G-T P3_b1 **
24354729-G-T 22208582-G-T **
24468936-C-A 22322789-C-A **
24475164-C-G 22329017-C-G **
24475165-G-C 22329018-G-C **
24475170-T-A 22329023-T-A **
24475178-A-G 22329031-A-G **
24475359-C-A 22329212-C-A **
24541619-G-T 22395472-G-T P3_t2 **
28506125-G-C 26359978-G-C **
24595420-G-C 22449273-G-C P3_t2 **
24672501-G-T 22526354-G-T P3_b2 **
24877535-G-C 22731388-G-C g1 **
25967664-G-T 23821517-G-T P1_Y1 **
25995537-TATAC-T 23849390-TATAC-T P1_Y1 **
26024605-A-G 23878458-A-G P1_Y1 **
26206092-A-G 24059945-A-G P1_Y1 **
26834681-A-G 24688534-A-G P1_g2 **
27914952-T-A 25768805-T-A P1_Y2 **
27982064-C-A 25835917-C-A P1_Y2 **
28478965-A-G 26332818-A-G **
21315357-C-G 19153471-C-G **
21206960-C-A 19045074-C-A **
10778553-C-A **
17804355-A-C 15692475-A-C **
17545475-A-C 15433595-A-C **
17545801-C-A 15433921-C-A **
17552105-G-A 15440225-G-A **
17576069-C-A 15464189-C-A **
17580916-A-G 15469036-A-G **
17684403-A-G 15572523-A-G **
17728709-A-G 15616829-A-G **
17728750-C-A 15616870-C-A **
17739833-A-C 15627953-A-C **
17794236-C-A 15682356-C-A **
17812347-C-A 15700467-C-A **
17499920-T-G 15388040-T-G **
17830983-C-T 15719103-C-T **
17876431-G-A 15764551-G-A **
17884571-TC-T 15772691-TC-T **
17898288-A-G 15786408-A-G **
17898293-C-T 15786413-C-T **
17929166-A-G 15817286-A-G **
17997528-T-C 15885648-T-C P7_Gap **
18101965-A-T 15990085-A-T **
18153687-G-T 16041807-G-T **
18242018-C-A 16130138-C-A **
18256093-G-T 16144213-G-T **
17500843-C-G 15388963-C-G **
17481327-A-C 15369447-A-C **
18443641-C-A 16331761-C-A P6_Dst **
17060540-C-A 14948660-C-A **
16747426-C-T 14635546-C-T **
16747431-C-T 14635551-C-T 9×T**
16783603-G-T 14671723-G-T **
16833404-T-C 14721524-T-C **
16885929-C-G 14774049-C-G **
16886390-A-T 14774510-A-T **
16896198-A-C 14784318-A-C **
17027686-C-A 14915806-C-A **
17029135-A-G 14917255-A-G **
17038409-C-A 14926529-C-A **
17038508-C-A 14926628-C-A **
17083400-C-A 14971520-C-A **
17466889-C-G 15355009-C-G **
17130025-C-A 15018145-C-A **
17211344-T-A 15099464-T-A **
17248110-CA-C 15136230-CA-C **
17248168-G-T 15136288-G-T **
17248202-C-A 15136322-C-A **
17319840-G-T 15207960-G-T **
17370933-T-G 15259053-T-G **
17370969-A-T 15259089-A-T **
17370988-G-T 15259108-G-T **
17372232-C-A 15260352-C-A **
17376157-A-C 15264277-A-C **
18281324-C-A 16169444-C-A P6_Prx **
18465440-A-T 16353560-A-T P6_Dst **
21200869-G-A 19038983-G-A **
20330556-T-A 18168670-T-A P5_Dst **
19567143-A-C 17455263-A-C **
19567145-A-C 17455265-A-C **
19732396-C-T 17620516-C-T P5_Prx **
19732419-G-T 17620539-G-T P5_Prx **
19831100-G-T 17719220-G-T P5_Prx **
19867259-T-C 17755379-T-C P5_Prx **
19867303-A-G 17755423-A-G P5_Prx **
19867328-T-TC 17755448-T-TC P5_Prx **
20025503-T-C 17913623-T-C P5_Prx **
20025562-C-A 17913682-C-A P5_Prx **
20330279-T-C 18168393-T-C P5_Dst **
20535106-G-C 18373220-G-C P5_Dst **
19532789-G-T 17420909-G-T **
20840871-G-GA 18678985-G-GA P4_Gap 8×A**
20914500-A-AC 18752614-A-AC P4_Dst **
20953701-CC-A 18791815-CC-A P4_Dst **
21068463-T-TA 18906577-T-TA **
21068473-T-TACATC 18906587-T-TACATC **
21082022-T-C 18920136-T-C **
21082024-C-A 18920138-C-A **
21110036-G-T 18948150-G-T **
21111662-A-G 18949776-A-G **
21152035-A-T 18990149-A-T **
21195927-A-C 19034041-A-C **
19537824-A-G 17425944-A-G **
19523560-T-C 17411680-T-C **
18580255-C-A 16468375-C-A **
19128708-C-A 17016828-C-A **
18733519-A-T 16621639-A-T **
18812189-A-T 16700309-A-T **
18814812-C-T 16702932-C-T **
18814817-C-A 16702937-C-A **
18845487-G-T 16733607-G-T **
18856347-C-A 16744467-C-A **
19019301-G-C 16907421-G-C **
19117346-A-T 17005466-A-T **
19127678-A-AG 17015798-A-AG **
19127679-CA-C 17015799-CA-C **
19127689-C-T 17015809-C-T **
19183911-C-A 17072031-C-A **
19416738-G-T 17304858-G-T **
19204060-TA-T 17092180-TA-T **
19235506-C-A 17123626-C-A **
19246048-C-A 17134168-C-A **
19246055-G-T 17134175-G-T **
19300698-C-A 17188818-C-A **
19304248-A-C 17192368-A-C **
19309455-AT-A 17197575-AT-A **
19340468-G-A 17228588-G-A **
19340476-A-G 17228596-A-G **
19369363-C-A 17257483-C-A **
19407628-G-T 17295748-G-T **
10779004-T-C **
10835400-C-A **
10778544-C-A **
10860861-C-A **
21815155-C-A 19653269-C-A **
9956344-T-A 10118735-T-A **
4779584-C-CT 4911543-C-CT 12×T**
10804485-A-C **
10666949-C-G **
10666998-C-T **
10667006-T-TG **
10667007-TC-T **
10666983-C-A **
10829122-C-A **
13222963-T-A 11067287-T-A **
4301728-C-A 4433687-C-A **
10921340-T-C **
10921355-C-G **
10751031-T-C **
10751069-C-G **
20557579-G-T 18395693-G-T P5_Dst **
13543616-C-A 11387940-C-A **
16056888-G-T 13945008-G-T **
22008396-C-A 19846510-C-A **
6630541-G-T 6762500-G-T **
10938631-C-A **
10757211-T-C **
11660238-GATGGA-G **
6773739-C-G 6905698-C-G **
6000720-G-T 6132679-G-T **
10666955-G-T **
10924262-C-A **
14540747-G-T 12428948-G-T **
6279334-T-G 6411293-T-G IR3_Dst **
9513548-C-A 9675939-C-A **
20326054-C-T 18164168-C-T P5_Dst **
13624656-C-A 11468980-C-A **
2814763-C-A 2946722-C-A **
10808105-A-C **
19558276-ATTT-A 17446396-ATTT-A 14×T**
14042760-C-T 11922054-C-T **
22164545-C-A 20002659-C-A **
5249695-C-A 5381654-C-A **
10921400-A-G **
10667012-T-G **
10885103-A-T **
20424848-A-G 18262962-A-G P5_Dst **
18959210-G-A 16847330-G-A **
4970101-T-G 5102060-T-G **
18753060-G-T 16641180-G-T **
10925379-C-T **
18948007-A-G 16836127-A-G **
4521611-CT-C 4653570-CT-C **
19407627-A-G 17295747-A-G **
7783179-C-A 7915138-C-A **
17353119-C-A 15241239-C-A **
14195134-C-T 12074428-C-T **
3757956-G-GT 3889915-G-GT 10×T**
10760085-C-T **
14234622-C-A 12113916-C-A **
3640713-C-T 3772672-C-T **
13433254-C-A 11277578-C-A **
10033151-C-A 10195542-C-A **
7758491-G-T 7890450-G-T 17×T**
13854717-C-T 11734011-C-T **
10982936-C-A **
10982968-T-TTGCAA **
2649758-G-A 2781717-G-A **
22727340-C-A 20565454-C-A **
2684117-C-T 2816076-C-T **
2684676-A-T 2816635-A-T **
2704906-A-T 2836865-A-T **
2718919-C-T 2850878-C-T **
2740388-A-C 2872347-A-C **
2759516-C-A 2891475-C-A **
2791504-G-T 2923463-G-T **
2793074-C-A 2925033-C-A **
2814791-C-A 2946750-C-A **
2832853-A-G 2964812-A-G **
10956703-G-C **
15364016-C-T 13252136-C-T **
22535905-T-A 20374019-T-A **
14042746-G-A 11922040-G-A **
6688652-C-A 6820611-C-A **
13944608-C-A 11823902-C-A **
24432680-C-CA 22286533-C-CA 8×A**
5926796-G-T 6058755-G-T **
6915-T-C **
5127181-C-A 5259140-C-A **
19249534-C-A 17137654-C-A **
8171864-C-A 8303823-C-A **
13502359-C-A 11346683-C-A **
14080100-G-T 11959394-G-T **
19275217-C-A 17163337-C-A **
8216430-A-T 8348389-A-T **
13601828-C-A 11446152-C-A **
10880870-C-A **
15363931-G-A 13252051-G-A **
15585025-C-A 13473145-C-A **
15940302-G-T 13828422-G-T **
3641239-C-A 3773198-C-A **
4671567-C-A 4803526-C-A **
28815237-T-G 26669090-T-G **
2791224-G-T 2923183-G-T **
7649124-A-T 7781083-A-T **
10751023-C-CCAATCCACAG **
10664795-C-CACACCACTAA **
16059-G-T **
2952126-T-C 3084085-T-C **
9639213-G-T 9801604-G-T IR3_Prx **
17633807-C-A 15521927-C-A **
10868081-G-T **
4241478-C-A 4373437-C-A **
16056907-C-G 13945027-C-G **
5535056-C-A 5667015-C-A **
2810389-TG-T 2942348-TG-T **
11038095-C-A **
15756544-C-A 13644664-C-A **
21505578-G-T 19343692-G-T 13×T**
15364015-C-G 13252135-C-G **
10949545-C-A **
15363930-G-C 13252050-G-C **
10958776-C-A **
56699819-T-C **
56699842-AATG-A **
10992356-A-C **
27829246-A-C 25683099-A-C P1_Y2 **
10801806-C-A **
15498197-G-T 13386317-G-T **
8792906-C-A 8924865-C-A **
27585939-GAC-G 25439792-GAC-G P1_Y2 **
10781124-C-A **
15363953-G-A 13252073-G-A **
15363923-A-G 13252043-A-G **
10875788-T-TTTAAC **
5190004-G-A 5321963-G-A 16×A**
19187414-G-T 17075534-G-T **
13809292-T-A 11688586-T-A **
13805007-T-G 11684301-T-G **
13256151-A-G 11100475-A-G **
23596925-G-T 21435039-G-T **
59006203-A-G 56860056-A-G **
14143010-T-A 12022304-T-A **
19272160-AG-A 17160280-AG-A **
21388645-ATC-A 19226759-ATC-A 11×TC**
3728025-G-A 3859984-G-A **
13286035-G-A 11130359-G-A **
16271828-G-A 14159948-G-A **
58891080-A-C 56699791-T-G **
27872508-C-A 25726361-C-A P1_Y2 **
5785697-T-C 5917656-T-C **
27585953-C-T 25439806-C-T P1_Y2 **
58891068-C-T 56699803-G-A **
19506939-C-CT 17395059-C-CT 11×T**
6795181-G-A 6927140-G-A **
16018954-G-A 13907074-G-A ****
58976033-G-A 56829886-G-A **
23007140-A-G 20845254-A-G ****
28530697-C-A 26384550-C-A **
13881251-C-A 11760545-C-A **
10959666-C-A **
13913741-T-TA 11793035-T-TA 13×A**
13485687-C-G 11330011-C-G **
11019298-C-A **
7155496-C-A 7287455-C-A **
13287810-C-A 11132134-C-A **
14743187-T-A 12631255-T-A **
4862831-G-T 4994790-G-T **
7123611-A-C 7255570-A-C **
14023176-C-A 11902470-C-A **
16679510-C-A 14567630-C-A **
10921350-A-C **
14698340-C-T 12586406-C-T **
21946420-C-A 19784534-C-A **
10057369-C-A 10219760-C-A **
10962976-TCTGGG-T **
10921401-A-C **
22204945-CT-C 20043059-CT-C **
17934028-C-A 15822148-C-A **
27829239-G-T 25683092-G-T P1_Y2 **
22801931-C-A 20640045-C-A **
24421942-C-A 22275795-C-A **
13460446-C-A 11304770-C-A **
21505560-C-T 19343674-C-T **
27914944-T-A 25768797-T-A P1_Y2 **
10982963-C-T **
10666994-C-T **
23802387-C-A 21640501-C-A **
10751004-T-C **
15882070-GTC-G 13770190-GTC-G **
19272166-C-T 17160286-C-T **
18249986-TA-T 16138106-TA-T 10×A**
18190671-A-C 16078791-A-C **
19476622-G-T 17364742-G-T **
17654111-G-A 15542231-G-A **
21505565-C-T 19343679-C-T **
14832138-C-A 12720205-C-A **
15161335-C-A 13049421-C-A **
10751003-C-G **
10751011-T-C **
3640721-C-T 3772680-C-T **
10927894-C-A **
24877540-G-C 22731393-G-C g1 **
10686725-C-G **
10880680-C-A **
11645406-T-A **
13944612-C-A 11823906-C-A **
7282387-C-A 7414346-C-A **
13460453-A-T 11304777-A-T **
13460482-C-G 11304806-C-G **
24877545-G-T 22731398-G-T g1 **
27546763-A-G 25400616-A-G P1_Y2 **
2833225-G-T 2965184-G-T **
21088873-T-A 18926987-T-A **
2980392-A-T 3112351-A-T **
7338123-G-A 7470082-G-A **
7225715-G-T 7357674-G-T **
7228217-C-A 7360176-C-A **
7238930-C-T 7370889-C-T **
7254030-G-A 7385989-G-A **
7254045-C-G 7386004-C-G **
7255402-G-A 7387361-G-A **
7275561-T-C 7407520-T-C **
7295976-A-G 7427935-A-G **
7306313-C-A 7438272-C-A **
7337050-C-A 7469009-C-A **
7385648-A-G 7517607-A-G **
7208259-G-T 7340218-G-T **
7423120-G-T 7555079-G-T **
7428344-C-A 7560303-C-A **
7630348-G-T 7762307-G-T **
7649128-C-T 7781087-C-T **
7649166-C-A 7781125-C-A 8×T**
7649171-T-G 7781130-T-G **
7699423-C-A 7831382-C-A **
7706429-C-A 7838388-C-A **
7757205-G-T 7889164-G-T **
7759239-T-A 7891198-T-A **
7224104-C-A 7356063-C-A **
7176972-C-A 7308931-C-A **
7861585-C-A 7993544-C-A **
6996599-C-A 7128558-C-A **
6773736-T-A 6905695-T-A **
6773738-C-T 6905697-C-T **
6773751-T-C 6905710-T-C **
6773760-C-T 6905719-C-T **
6773762-T-A 6905721-T-A **
6792608-G-A 6924567-G-A **
6926673-C-A 7058632-C-A **
6944933-G-A 7076892-G-A **
6944942-TC-T 7076901-TC-T **
6984634-A-T 7116593-A-T **
6996724-C-T 7128683-C-T **
7172548-T-C 7304507-T-C **
7014709-C-G 7146668-C-G **
3078528-A-T 3210487-A-T **
7014719-T-C 7146678-T-C **
7014720-C-A 7146679-C-A **
7040859-G-T 7172818-G-T **
7108221-T-G 7240180-T-G **
7123694-A-C 7255653-A-C **
7132757-G-T 7264716-G-T **
7135433-C-G 7267392-C-G **
7166513-G-A 7298472-G-A **
7166593-G-T 7298552-G-T **
7860263-C-A 7992222-C-A **
7922640-T-C 8054599-T-C **
6757010-C-T 6888969-C-T **
10748007-A-AATTCT **
10654212-A-C **
10662217-C-T **
10664855-C-A **
10665156-T-C **
10683168-C-A **
10685173-A-C **
10685197-C-A **
10685846-G-T **
10694142-G-C **
10747991-C-G **
10748019-T-TATCCTCCGAAA **
10617680-T-A **
10748025-C-G **
10748036-C-CATACA **
10748045-C-T **
10753040-T-C **
10754080-C-A **
10755741-A-G **
10755795-G-T **
10757899-C-A **
10759117-A-T **
10760077-T-C **
10651841-A-G **
10059434-T-A 10221825-T-A **
8067454-C-T 8199413-C-T **
9535172-T-C 9697563-T-C IR3_Prx **
8075901-C-A 8207860-C-A **
8669925-C-A 8801884-C-A **
8720352-G-T 8852311-G-T **
8730916-C-A 8862875-C-A **
8735533-G-A 8867492-G-A **
8854157-T-C 8986116-T-C **
8977027-T-A 9139418-T-A **
9377965-C-T 9540356-C-T **
9385083-A-G 9547474-A-G **
9503984-G-C 9666375-G-C **
9639208-A-T 9801599-A-T IR3_Prx **
10023460-ATGC-A 10185851-ATGC-A **
9730658-T-C 9893049-T-C IR3_Prx **
9732916-T-AA 9895307-T-AA IR3_Prx **
9859192-C-A 10021583-C-A 17×A**
9943518-C-A 10105909-C-A **
9952126-C-A 10114517-C-A **
9952131-C-A 10114522-C-A **
9952486-A-C 10114877-A-C **
9991249-C-G 10153640-C-G **
10020197-G-GGATTGC 10182588-G-GGATTGC **
10020199-TTCA-T 10182590-TTCA-T **
10020219-G-T 10182610-G-T **
6768919-C-T 6900878-C-T **
7014711-C-A 7146670-C-A **
6664030-T-G 6795989-T-G **
4374272-G-T 4506231-G-T **
4063916-C-A 4195875-C-A **
4101006-A-C 4232965-A-C **
4103213-A-G 4235172-A-G **
4103235-G-T 4235194-G-T **
4133908-C-A 4265867-C-A **
4138868-T-G 4270827-T-G **
4234219-A-T 4366178-A-T **
4241494-A-G 4373453-A-G **
4256885-A-T 4388844-A-T **
4321972-C-A 4453931-C-A **
4402731-A-C 4534690-A-C **
4024849-C-A 4156808-C-A **
4474523-C-A 4606482-C-A **
4505894-G-A 4637853-G-A **
4541274-A-G 4673233-A-G **
4766014-T-C 4897973-T-C **
4804541-A-T 4936500-A-T **
4873768-T-A 5005727-T-A **
4908256-A-C 5040215-A-C **
4931046-TC-T 5063005-TC-T **
4970061-G-T 5102020-G-T **
5184710-C-A 5316669-C-A **
4043860-G-A 4175819-G-A **
4024733-C-A 4156692-C-A **
5420739-A-C 5552698-A-C **
3510813-G-T 3642772-G-T **
3116556-A-T 3248515-A-T **
3116583-A-C 3248542-A-C **
3116632-A-G 3248591-A-G **
3128180-T-C 3260139-T-C **
3178802-A-C 3310761-A-C **
3196055-T-G 3328014-T-G **
3230850-G-T 3362809-G-T **
3285062-G-C 3417021-G-C **
3442234-T-C 3574193-T-C **
3487954-CCA-C 3619913-CCA-C **
3545484-G-A 3677443-G-A **
4003146-C-A 4135105-C-A **
3546057-T-G 3678016-T-G **
3640725-C-T 3772684-C-T **
3663203-A-G 3795162-A-G **
3663304-C-A 3795263-C-A **
3696663-G-T 3828622-G-T **
3746587-G-A 3878546-G-A **
3793586-G-T 3925545-G-T **
3847242-T-C 3979201-T-C **
3847789-G-A 3979748-G-A **
3851853-A-C 3983812-A-C **
3866013-A-T 3997972-A-T **
5335446-T-C 5467405-T-C **
4692989-C-G 4824948-C-G **
5422108-G-C 5554067-G-C **
5770721-G-T 5902680-G-T **
6435101-G-T 6567060-G-T **
5644589-C-A 5776548-C-A **
5710058-A-G 5842017-A-G **
6358390-C-A 6490349-C-A **
5720795-C-A 5852754-C-A **
6346081-T-A 6478040-T-A **
5801189-C-G 5933148-C-G **
6510146-A-T 6642105-A-T **
5801444-A-C 5933403-A-C **
5846476-C-A 5978435-C-A **
6279341-T-G 6411300-T-G IR3_Dst **
5859055-A-C 5991014-A-C **
5873392-G-T 6005351-G-T **
6271073-A-T 6403032-A-T IR3_Dst **
6150080-A-G 6282039-A-G IR3_Dst **
5538106-A-C 5670065-A-C **
5598092-A-G 5730051-A-G **
5422124-A-T 5554083-A-T **
5538055-C-T 5670014-C-T **
6596057-A-T 6728016-A-T **
6579583-T-G 6711542-T-G **
5447037-A-G 5578996-A-G **
5534758-C-A 5666717-C-A **
6596103-G-A 6728062-G-A **
6630529-A-T 6762488-A-T **
7146318-AG-A 7278277-AG-A ***
17361057-TCA-T 15249177-TCA-T ***
8607610-C-T 8739569-C-T 12×T***
21561547-CA-C 19399661-CA-C 9×A***
3833647-C-A 3965606-C-A ***
14180762-C-T 12060056-C-T ***
13468245-C-T 11312569-C-T ***
19271300-A-T 17159420-A-T ***
14181448-G-T 12060742-G-T ***
22511788-T-A 20349902-T-A DYZ19 ***
13463954-C-A 11308278-C-A ***
10024270-C-A 10186661-C-A ***
14825845-A-G 12713912-A-G ***
8631416-G-T 8763375-G-T ***
7409900-AT-A 7541859-AT-A ***
10958407-C-A ***
10016604-A-G 10178995-A-G ***
13445531-G-T 11289855-G-T ***
15074825-GTTA-G 12962915-GTTA-G 6×TTA***
22949496-G-T 20787610-G-T ***
58984083-A-G 56837936-A-G ***
19135085-C-A 17023205-C-A ***
6124052-A-T 6256011-A-T ***
21504021-A-T 19342135-A-T ***
6943972-CTTT-C,CTTTT 7075931-CTTT-C,CTTTT 15×T***
10915959-G-T ***
2774683-G-T 2906642-G-T ***
13895260-C-A 11774554-C-A ***
15750521-C-T 13638641-C-T ***
56844952-C-A ***
6672324-C-A 6804283-C-A ***
15750531-G-T 13638651-G-T ***
11014409-C-A ***
8773858-CAAAAA-C,CAAA 8905817-CAAAAA-C,CAAA 16×A***
6741444-CTTGTT-C 6873403-CTTGTT-C ***
22601862-C-A 20439976-C-A ***
10985059-C-A ***
16909202-A-G 14797322-A-G ***
14563634-C-A 12451834-C-A ***
10988572-TTCCATTCCAC-T,TTCCATTCAAC ***
10889772-T-C ***
22173799-C-A 20011913-C-A ***
11022855-T-C ***
18019852-TTTG-T 15907972-TTTG-T ***
22069641-C-A 19907755-C-A ***
16952485-C-A 14840605-C-A ***
10689068-CAATCT-C ***
17673101-C-A 15561221-C-A ***
5011319-A-G 5143278-A-G ***
13311820-G-C 11156144-G-C ***
10023781-C-A 10186172-C-A ***
13311800-G-C 11156124-G-C ***
14405820-A-C 12285117-A-C ***
22914570-T-A 20752684-T-A ***
28622600-C-A 26476453-C-A ***
18619123-C-A 16507243-C-A ***
16830460-C-A 14718580-C-A ***
13640808-C-A 11485132-C-A ***
15168804-C-A 13056890-C-A ***
7035802-A-T 7167761-A-T ***
13478259-G-T 11322583-G-T ***
23436565-CA-C 21274679-CA-C 9×A***
14997946-A-G 12886031-A-G ***
23983541-G-T 21837394-G-T ***
4236031-G-A 4367990-G-A ***
8649881-C-A 8781840-C-A ***
23523745-C-A 21361859-C-A ***
3833644-C-A 3965603-C-A ***
8911831-G-T 9043790-G-T ***
15882483-A-G 13770603-A-G ***
10946012-T-C ***
23352353-C-A 21190467-C-A ***
23327296-CTT-C,CTTT 21165410-CTT-C,CTTT 11×T***
14698230-C-T 12586296-C-T ***
7656025-TA-T 7787984-TA-T 10×A***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 4096051063327176965197778303
Kit: 409605962628378384567729403
Used in age calculations1063327178384567778303
Counts of SNPs21
Variant counts last updated 2018-02-23 00:40:35.



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