Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > ZZ10 > Z253 > Z2534 > ZZ5 > Z2185 > Z2186 > L1066 > BY411 > BY14612 > BY14605 > A18472 > A18471 > Y34049

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
226153
BigY2
226153
13449831-C-T 11294155-C-T A*
13449909-C-A 11294233-C-A A*
6861230-T-TTTTCTTTCTTTCTTTC 6993189-T-TTTTCTTTCTTTCTTTC 17×TTTC*
14747961-CTTT-C 12636030-CTTT-C 22×T*
18149562-A-AATAG 16037682-A-AATAG 7×ATAG****
19284019-G-GTATGC 17172139-G-GTATGC 10×TATGC*
22255783-T-G 20093897-T-G DYZ19 ****
22280758-G-T 20118872-G-T Z18107 DYZ19 ****
13458637-GTTCCA-G 11302961-GTTCCA-G 9×TTCCA*
14392940-A-T 12272236-A-T **
56869106-G-T **
14422209-A-C 12301484-A-C **
14387301-T-C 12266597-T-C **
14385777-G-A 12265073-G-A **
14385769-A-T 12265065-A-T **
14361470-C-A 12240765-C-A **
14352816-C-G 12232111-C-G **
14398329-A-G 12277625-A-G **
14422241-C-A 12301516-C-A **
14422236-A-C 12301511-A-C **
14351126-T-C 12230421-T-C **
14422245-A-C 12301520-A-C **
14427117-A-C 12306392-A-C **
14464399-C-A 12343672-C-A **
14470790-G-A 12350059-G-A **
14473589-C-G 12352858-C-G **
14546756-C-A 12434957-C-A **
14557108-C-A 12445309-C-A **
14564152-C-A 12452352-C-A **
14582377-T-A 12470577-T-A **
14610653-G-C 12498855-G-C **
14610660-T-C 12498862-T-C **
14619445-C-T 12507643-C-T **
14352779-G-A 12232074-G-A **
14278795-T-A 12158089-T-A **
14300664-C-A 12179958-C-A **
14077809-A-G 11957103-A-G **
13855866-G-A 11735160-G-A **
13871448-C-A 11750742-C-A **
13872743-C-A 11752037-C-A **
13937986-C-G 11817280-C-G **
13941802-G-T 11821096-G-T **
13975575-A-G 11854869-A-G **
14014592-G-T 11893886-G-T **
14034958-C-A 11914252-C-A **
14034972-C-A 11914266-C-A **
14065824-A-G 11945118-A-G **
14067024-C-A 11946318-C-A **
14079980-G-T 11959274-G-T **
14280856-C-A 12160150-C-A **
14080088-ATATATG-A 11959382-ATATATG-A **
14080105-C-T 11959399-C-T **
14176485-C-A 12055779-C-A **
14181511-G-T 12060805-G-T **
14192996-C-A 12072290-C-A **
14196424-C-A 12075718-C-A **
14255060-C-A 12134354-C-A **
14273608-T-C 12152902-T-C **
14278774-G-T 12158068-G-T **
14648700-C-A 12536765-C-A **
14280830-C-T 12160124-C-T **
14624327-T-A 12512527-T-A **
14694866-C-A 12582932-C-A **
14649588-C-T 12537653-C-T **
15655511-C-A 13543631-C-A **
15504109-A-C 13392229-A-C **
15518632-T-C 13406752-T-C **
15542235-C-A 13430355-C-A **
15576809-A-T 13464929-A-T **
15576811-T-A 13464931-T-A **
15576815-A-G 13464935-A-G **
15576830-C-T 13464950-C-T **
15576836-C-T 13464956-C-T **
15616605-T-C 13504725-T-C **
15619035-C-G 13507155-C-G **
15648772-C-A 13536892-C-A **
15686863-A-G 13574983-A-G **
15423837-G-C 13311957-G-C **
15686864-G-T 13574984-G-T **
15686869-C-G 13574989-C-G **
15732841-A-G 13620961-A-G **
15803559-C-G 13691679-C-G **
15832259-C-A 13720379-C-A **
15922289-A-C 13810409-A-C **
15963640-G-T 13851760-G-T **
15971661-G-C 13859781-G-C **
15976563-T-A 13864683-T-A **
15982189-C-A 13870309-C-A **
16037203-C-A 13925323-C-A **
16045357-C-A 13933477-C-A **
15469193-C-A 13357313-C-A **
15423824-A-C 13311944-A-C **
14691694-T-C 12579760-T-C **
15109144-G-C 12997231-G-C **
13809485-A-G 11688779-A-G **
14727243-C-A 12615311-C-A **
14754094-TG-C 12642163-TG-C **
14781038-C-A 12669108-C-A **
14784986-C-A 12673056-C-A **
14799980-C-A 12688051-C-A **
14835327-A-G 12723394-A-G 14×T**
14844576-A-C 12732642-A-C **
15074562-C-A 12962652-C-A **
15076275-A-G 12964365-A-G **
15109119-T-A 12997206-T-A **
15157855-C-A 13045942-C-A **
15400231-C-G 13288351-C-G **
15171411-A-G 13059497-A-G **
15181648-A-G 13069734-A-G **
15183704-G-A 13071790-G-A **
15209248-C-A 13097334-C-A **
15210818-T-C 13098904-T-C **
15221389-T-G 13109475-T-G **
15279274-G-T 13167373-G-T **
15298102-C-A 13186201-C-A **
15298137-G-A 13186236-G-A **
15332209-A-C 13220327-A-C **
15397026-C-T 13285146-C-T **
15400161-G-C 13288281-G-C **
13855715-G-A 11735009-G-A **
11653549-G-T **
13800849-G-T 11680143-G-T **
10907546-C-A **
10872275-C-G **
10880461-A-G **
10884110-T-A **
10885067-C-A **
10888663-C-A **
10893277-T-C **
10898250-C-A **
10898480-C-A **
10899185-AT-A **
10899195-A-T **
10904977-C-A **
10912312-C-G **
10872248-A-T **
10918098-G-T **
10918140-G-T **
10924353-A-C **
10924360-T-A **
10924394-T-A **
10924415-T-TGCAAA **
10933160-C-A **
10934955-G-T **
10937208-TACTCC-T **
10941386-G-C **
10942698-A-T **
10872269-T-G **
10872236-C-G **
10953065-C-T **
10830244-C-A **
10809247-C-T **
10813347-T-G **
10816016-A-C **
10822138-T-C **
10825535-C-T **
10825536-A-C **
10825561-G-C **
10825575-C-G **
10826103-C-A **
10826124-T-G **
10829127-C-A **
10831426-C-A **
10872220-GCACTA-G **
10835060-C-A **
10841121-G-T **
10842995-A-C **
10850616-AT-A **
10851782-C-A **
10855776-C-A **
10855784-T-A **
10855804-T-C **
10856481-G-T **
10864873-C-A **
10872223-C-T **
10942960-T-G **
10953422-C-A **
11673681-G-A **
13549841-C-A 11394165-C-A **
13224628-C-A 11068952-C-A **
13227904-A-G 11072228-A-G **
13231785-C-A 11076109-C-A **
13249550-C-A 11093874-C-A **
13410085-C-A 11254409-C-A **
13445327-C-A 11289651-C-A **
13485518-C-A 11329842-C-A **
13485769-C-A 11330093-C-A **
13490527-A-T 11334851-A-T **
13490984-C-A 11335308-C-A **
13505077-C-T 11349401-C-T **
13549905-T-C 11394229-T-C **
13212487-G-C 11056811-G-C **
13552704-G-T 11397028-G-T **
13596408-C-A 11440732-C-A **
13620670-C-A 11464994-C-A **
13643822-A-G 11488146-A-G **
13692773-A-T 11537097-A-T **
13692779-G-C 11537103-G-C **
11650216-C-A **
16147491-A-AAAG 14035611-A-AAAG P8_Dst **
11665252-C-A **
11665311-G-T **
11670780-A-G **
13223230-A-G 11067554-A-G **
11029585-T-C **
10953693-T-A **
10999320-A-C **
10954408-T-G **
10954717-A-C **
10958246-T-A **
10969511-C-A **
10972997-C-A **
10973260-C-A **
10973311-A-T **
10980789-C-A **
10982313-C-T **
10982338-T-G **
10983130-C-A **
11000712-C-A **
11021546-A-C **
11001360-T-C **
11003193-C-T **
11003208-C-T **
11003236-C-T **
11003257-T-A **
11003597-C-A **
11007161-C-A **
11007252-C-A **
11011720-T-C **
11018157-C-A **
11021507-T-C **
11021541-A-C **
16091152-C-A 13979272-C-A **
16342210-C-A 14230330-C-A **
16147494-GAGA-G 14035614-GAGA-G P8_Dst **
23285184-C-T 21123298-C-T **
22730684-T-A 20568798-T-A **
22775551-C-A 20613665-C-A **
22811792-G-C 20649906-G-C **
22836897-C-A 20675011-C-A **
22864875-A-T 20702989-A-T **
22875420-C-A 20713534-C-A **
23111760-T-C 20949874-T-C **
23185998-G-A 21024112-G-A **
23204903-C-A 21043017-C-A **
23205014-G-T 21043128-G-T **
23248444-C-A 21086558-C-A **
23311226-T-C 21149340-T-C **
22722385-T-G 20560499-T-G **
23352549-A-C 21190663-A-C **
23412098-T-C 21250212-T-C **
23420573-G-A 21258687-G-A **
23434181-C-A 21272295-C-A **
23537381-T-A 21375495-T-A **
23633446-C-A 21471560-C-A **
23802388-TCAA-T 21640502-TCAA-T **
23848112-C-A 21686226-C-A **
23885385-G-T 21723499-G-T **
23997568-G-T 21851421-G-T **
24047633-C-A 21901486-C-A **
22729383-A-T 20567497-A-T **
22722382-C-T 20560496-C-T **
24407270-G-T 22261123-G-T **
21713422-G-A 19551536-G-A **
21435350-C-A 19273464-C-A **
21435358-T-G 19273472-T-G **
21450873-T-G 19288987-T-G **
21457350-T-C 19295464-T-C **
21457415-T-A 19295529-T-A **
21457975-A-T 19296089-A-T **
21459654-A-G 19297768-A-G **
21500218-C-A 19338332-C-A **
21691547-T-A 19529661-T-A **
21698785-C-A 19536899-C-A **
21700458-G-C 19538572-G-C **
21823229-T-C 19661343-T-C **
22619502-A-T 20457616-A-T **
21899785-C-G 19737899-C-G **
21920647-G-T 19758761-G-T **
22008211-G-A 19846325-G-A **
22068864-C-T 19906978-C-T **
22081045-C-A 19919159-C-A **
22146484-G-T 19984598-G-T **
22167442-C-A 20005556-C-A **
22211230-C-A 20049344-C-A **
22241477-T-A 20079591-T-A DYZ19 **
22241498-A-T 20079612-A-T DYZ19 **
22515152-C-A 20353266-C-A **
22522401-T-A 20360515-T-A **
24267224-C-CCA 22121077-C-CCA P3_b1 **
24434692-A-C 22288545-A-C **
21435334-C-G 19273448-C-G **
28691318-C-A 26545171-C-A **
28535577-C-A 26389430-C-A **
28563598-C-A 26417451-C-A **
28574572-C-A 26428425-C-A **
28608584-C-A 26462437-C-A **
28611587-A-G 26465440-A-G **
28624376-C-T 26478229-C-T **
28625264-G-T 26479117-G-T **
28625467-T-G 26479320-T-G **
28625523-A-T 26479376-A-T **
28656230-C-A 26510083-C-A **
28678989-A-G 26532842-A-G **
28715430-G-T 26569283-G-T **
28518879-C-G 26372732-C-G **
28724380-T-G 26578233-T-G **
28724383-A-C 26578236-A-C **
28731876-A-T 26585729-A-T **
28762635-C-A 26616488-C-A **
28778961-C-A 26632814-C-A **
28818336-G-T 26672189-G-T **
56685528-G-A **
56823165-T-G **
56823284-A-C **
56843738-G-T **
56849722-C-A **
28518883-T-G 26372736-T-G **
28513682-G-A 26367535-G-A **
24614088-T-C 22467941-T-C P3_t2 **
27916347-T-A 25770200-T-A P1_Y2 **
24614160-C-A 22468013-C-A P3_t2 **
24618804-G-C 22472657-G-C P3_t2 **
24618870-T-TA 22472723-T-TA P3_t2 **
25096588-C-T 22950441-C-T g1 **
26204501-C-A 24058354-C-A P1_Y1 **
26478026-C-A 24331879-C-A P1_Y1 **
27546610-T-C 25400463-T-C P1_Y2 **
27546769-A-T 25400622-A-T P1_Y2 **
27546783-A-G 25400636-A-G P1_Y2 **
27595897-T-C 25449750-T-C P1_Y2 **
27916337-G-A 25770190-G-A P1_Y2 **
27943920-T-A 25797773-T-A P1_Y2 **
28506130-A-T 26359983-A-T **
27943976-A-AACCT 25797829-A-AACCT P1_Y2 **
27966904-C-T 25820757-C-T P1_Y2 **
27966905-C-G 25820758-C-G P1_Y2 **
27968355-T-TA 25822208-T-TA P1_Y2 **
27976864-T-C 25830717-T-C P1_Y2 **
27976968-C-A 25830821-C-A P1_Y2 **
27976985-T-G 25830838-T-G P1_Y2 **
28465802-T-A 26319655-T-A **
28478332-A-G 26332185-A-G **
28484292-C-A 26338145-C-A **
28504680-C-A 26358533-C-A **
28506058-T-C 26359911-T-C **
21435336-G-A 19273450-G-A **
21435333-G-T 19273447-G-T **
16246320-C-A 14134440-C-A **
17770241-A-C 15658361-A-C **
17434082-A-T 15322202-A-T **
17440798-A-G 15328918-A-G **
17490304-T-G 15378424-T-G **
17498969-C-T 15387089-C-T **
17591874-T-G 15479994-T-G **
17597899-G-A 15486019-G-A **
17642543-G-T 15530663-G-T **
17642568-G-T 15530688-G-T **
17646588-G-A 15534708-G-A **
17737946-C-T 15626066-C-T **
17737972-A-G 15626092-A-G **
17927416-C-A 15815536-C-A **
17104149-T-G 14992269-T-G **
17942193-C-A 15830313-C-A **
17953719-T-G 15841839-T-G **
18130602-G-T 16018722-G-T **
18210965-C-A 16099085-C-A **
18384253-G-T 16272373-G-T P6_Gap **
18391919-C-A 16280039-C-A P6_Gap **
18412091-T-A 16300211-T-A P6_Gap **
18565271-T-C 16453391-T-C **
18589716-G-TT 16477836-G-TT **
18604489-A-T 16492609-A-T **
18628162-C-A 16516282-C-A **
17235490-C-A 15123610-C-A **
17087072-G-A 14975192-G-A **
18707066-C-A 16595186-C-A **
16779152-T-C 14667272-T-C **
16305896-G-A 14194016-G-A **
10801096-A-C **
16422801-G-A 14310921-G-A Y26504 **
16430184-C-A 14318304-C-A **
16463903-A-G 14352023-A-G **
16528195-C-A 14416315-C-A **
16603206-A-C 14491326-A-C **
16619828-A-G 14507948-A-G **
16652021-G-GT 14540141-G-GT **
16688082-A-G 14576202-A-G **
16730002-T-A 14618122-T-A **
16823832-G-A 14711952-G-A **
17085827-A-G 14973947-A-G **
16914394-GAGATAATA-G 14802514-GAGATAATA-G **
16969432-AT-A 14857552-AT-A **
16971404-C-A 14859524-C-A **
16993990-C-A 14882110-C-A **
17014488-C-A 14902608-C-A **
17042942-C-A 14931062-C-A **
17064848-G-C 14952968-G-C **
17081252-T-A 14969372-T-A **
17085812-T-G 14973932-T-G **
17085816-T-C 14973936-T-C **
17085817-G-A 14973937-G-A **
17085820-C-T 14973940-C-T **
18668060-C-T 16556180-C-T **
18789546-A-T 16677666-A-T **
21435290-C-G 19273404-C-G **
21162807-T-C 19000921-T-C **
21031894-G-T 18870008-G-T P4_Dst **
21141094-T-C 18979208-T-C **
21141099-A-G 18979213-A-G **
21141103-T-C 18979217-T-C **
21141117-G-A 18979231-G-A **
21151821-A-C 18989935-A-C **
21151824-A-C 18989938-A-C **
21153617-A-G 18991731-A-G **
21154434-G-A 18992548-G-A **
21154544-G-C 18992658-G-C **
21154570-A-G 18992684-A-G **
21201272-A-C 19039386-A-C **
20755629-A-C 18593743-A-C P4_Prx **
21211807-C-A 19049921-C-A **
21281558-CAG-C 19119672-CAG-C **
21367573-C-A 19205687-C-A **
21368732-C-A 19206846-C-A **
21422287-C-A 19260401-C-A **
21435227-G-A 19273341-G-A **
21435251-A-G 19273365-A-G **
21435256-C-T 19273370-C-T **
21435268-A-AC 19273382-A-AC **
21435273-G-A 19273387-G-A **
21435279-C-T 19273393-C-T **
21435287-C-A 19273401-C-A **
20842436-GAAAGAGAA-G 18680550-GAAAGAGAA-G P4_Dst **
20712429-C-A 18550543-C-A P4_Prx **
18844202-A-C 16732322-A-C **
19187443-A-G 17075563-A-G **
18859221-A-T 16747341-A-T **
18864942-T-G 16753062-T-G **
18865944-C-A 16754064-C-A **
18892155-C-T 16780275-C-T **
18892444-G-C 16780564-G-C **
18950761-C-A 16838881-C-A **
18985000-C-A 16873120-C-A **
19060835-C-A 16948955-C-A **
19145512-C-A 17033632-C-A **
19168525-A-G 17056645-A-G **
19168835-C-A 17056955-C-A **
19245988-T-C 17134108-T-C **
20459166-A-T 18297280-A-T P5_Dst **
19253292-G-T 17141412-G-T **
19351831-C-A 17239951-C-A **
19385067-T-C 17273187-T-C **
19416557-C-A 17304677-C-A **
19416559-TC-T 17304679-TC-T **
19518681-T-A 17406801-T-A **
19536815-G-C 17424935-G-C **
19557520-C-A 17445640-C-A **
19771111-T-G 17659231-T-G P5_Prx **
19791344-T-A 17679464-T-A P5_Prx **
19842212-G-T 17730332-G-T P5_Prx **
20101694-A-ATG 17989814-A-ATG P5_Dst **
10803251-C-A **
10849775-G-A **
10800642-C-A **
10796634-T-C **
10818644-ACCATT-A **
15181635-T-C 13069721-T-C **
21945403-C-A 19783517-C-A **
22426884-C-A 20264998-C-A DYZ19 **
22865354-C-A 20703468-C-A **
9839544-T-A 10001935-T-A **
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6241152-CA-C 6373111-CA-C IR3_Dst **
6630544-G-T 6762503-G-T **
6470762-A-G 6602721-A-G **
6983812-C-A 7115771-C-A **
10770966-A-C **
10780171-C-A **
5851423-A-G 5983382-A-G **
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10781569-C-A **
5859233-C-A 5991192-C-A **
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10805097-G-T ***
9935469-A-G 10097860-A-G ***
22869522-CAT-C 20707636-CAT-C ***
10987916-C-T ***
23255668-CA-C 21093782-CA-C 10×A***
10987213-A-T ***
13474017-T-C 11318341-T-C ***
16908473-G-A 14796593-G-A ***
56840538-G-T ***
23452088-C-A 21290202-C-A ***
23352193-C-A 21190307-C-A ***
10036592-G-A 10198983-G-A ***
19263521-C-A 17151641-C-A ***
58982800-G-C 56836653-G-C A18570 ***
13462304-C-A 11306628-C-A ***
13451721-CTCCAG-C,CTCCAC 11296045-CTCCAG-C,CTCCAC ***
10677745-CTCCAA-C ***
8002055-C-A 8134014-C-A Y3790 FGC1214 ***
10782652-T-C ***
28635192-C-A 26489045-C-A ***
14552150-G-A 12440351-G-A A10381 11×A***
22255758-T-C 20093872-T-C DYZ19 ***
22328522-C-T 20166636-C-T DYZ19 ***
13812941-C-T 11692235-C-T ***
8600008-TC-T 8731967-TC-T ***
18564316-CTTTTTT-C 16452436-CTTTTTT-C 19×T***
10688022-C-A ***
7014611-GTA-G 7146570-GTA-G ***
10012650-A-G,T 10175041-A-G,T ***
10794583-C-A ***
18679925-CAAAA-C 16568045-CAAAA-C 25×A***
10894111-C-A ***
11643738-G-C ***
10664836-ACTCAC-A ***
10664803-T-C ***
10847090-C-T ***
7163312-CT-C,CTT 7295271-CT-C,CTT 11×T***
9003706-AT-A 9166097-AT-A 10×T******
10662115-C-A ***
8690242-C-G 8822201-C-G ***
27872479-G-GA 25726332-G-GA P1_Y2 10×A***
22456875-T-G 20294989-T-G DYZ19 ***
28462644-G-T 26316497-G-T ***
10892568-C-CA ***
10657274-C-T ***
22339620-C-T 20177734-C-T BY22461 DYZ19 ***
22815505-GTTT-G 20653619-GTTT-G 20×T***
22720427-G-A 20558541-G-A ***
18085121-C-A 15973241-C-A ***
6012700-C-A 6144659-C-A ***
14219780-C-A 12099074-C-A ***
10847115-A-C ***
6719441-TAAA-T 6851400-TAAA-T 14×A***
16246085-G-T 14134205-G-T ***
18648513-CT-C 16536633-CT-C 9×T***
17951285-G-A 15839405-G-A ***
18080673-C-A 15968793-C-A ***
11657243-G-A ***
15124226-C-A 13012313-C-A ***
18568170-A-G 16456290-A-G ***
15507819-C-T 13395939-C-T ***
18616697-A-G 16504817-A-G ***
6989107-T-TAA 7121066-T-TAA 23×A***
28814860-A-C 26668713-A-C ***
13497930-A-G 11342254-A-G ***
19165993-T-C 17054113-T-C ***
13462326-C-A 11306650-C-A ***
16991444-C-A 14879564-C-A ***
14359922-AG-A 12239217-AG-A ***
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4925656-GT-G 5057615-GT-G ***
3592865-C-A 3724824-C-A ***
3865634-C-A 3997593-C-A ***
3536125-C-A 3668084-C-A ***
14900881-A-G 12788948-A-G ***
14702380-C-A 12590446-C-A ***
15618059-C-A 13506179-C-A ***
2836369-TG-T 2968328-TG-T ***
4898155-G-A 5030114-G-A ***
15816365-C-A 13704485-C-A ***
11643708-G-T ***
14461119-C-T 12340392-C-T ***
16039808-C-A 13927928-C-A Y95374 ***
18264030-C-A 16152150-C-A ***
6345964-G-T 6477923-G-T ***
16413376-T-A 14301496-T-A ***
14356903-T-C 12236198-T-C ***
13939316-C-A 11818610-C-A ***
19421597-C-A 17309717-C-A ***
13462302-G-C 11306626-G-C ***
10911631-C-G ***
22698953-C-T 20537067-C-T ***
10958273-C-T ***
10977101-T-TC ***
10977101-T-C ***
10799606-A-T ***
21663277-AG-AA,G 19501391-AG-AA,G ***
10799597-T-G ***
8498355-G-A 8630314-G-A ***
10892578-C-T ***
10958356-T-A ***
28814862-T-A 26668715-T-A ***
9074063-C-A 9236454-C-A ***
22032658-G-T 19870772-G-T ***
10935583-A-T ***
9495501-G-T 9657892-G-T ***
9811046-G-T 9973437-G-T ***
9836888-GTTTTTT-G,GT 9999279-GTTTTTT-G,GT 20×T***
22562834-C-A 20400948-C-A ***
22581164-C-A 20419278-C-A ***
15956864-A-T 13844984-A-T ***
14324938-C-T 12204232-C-T ***
10770530-T-C ***
19479688-AGT-A,AGTGT 17367808-AGT-A,AGTGT 20×GT***
17375794-G-T 15263914-G-T ***
10887453-C-A,T ***
26152168-CTTCTTTCTTTCT-C,CTTCT 24006021-CTTCTTTCTTTCT-C,CTTCT P1_Y1 19×TTCT***
20063924-C-A 17952044-C-A P5_Gap ***
8077183-A-T 8209142-A-T ***
13213633-G-A 11057957-G-A ***
8117302-C-A 8249261-C-A ***
14394468-TAAAA-T 12273764-TAAAA-T 16×A***
10911650-T-C ***
3815117-G-T 3947076-G-T ***
13462317-T-A 11306641-T-A ***
10652502-C-A ***
10873142-G-C ***
21262355-G-A 19100469-G-A ***
21292579-TAAA-T 19130693-TAAA-T 15×A***
10804789-C-G ***
8844431-C-A 8976390-C-A ***
8850135-C-A 8982094-C-A ***
9056968-T-C ***
10988709-C-A ***
8644547-C-CTA 8776506-C-CTA 8×TA***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

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