Tree Position

A0-T-YP2191 > P305[A1] > A1b > BT/A1b2 > M168/PF1416[CT] > P143[CF] > M89/PF2746[F] > F1329/M3658[GHI > F929[HIJK] > IJK > IJ > M170[I] > Z2881 > DF29 > Z2336 > Z2337 > FGC41279 > S9318

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
unk-I
22232957-T-C 20071071-T-C BY22800 DYZ19 +
22469659-C-T 20307773-C-T BY22815 DYZ19 +
22469673-G-T 20307787-G-T DYZ19 +
25062270-T-C 22916123-T-C BY2328 g1 +
22340341-T-A 20178455-T-A BY22828 F25186 DYZ19 +
22340345-A-T 20178459-A-T BY21575 DYZ19 +
22340347-G-C 20178461-G-C BY21576 DYZ19 +
22340354-A-T 20178468-A-T BY21577 DYZ19 +
22340376-C-T 20178490-C-T E610 DYZ19 +
22227766-T-C 20065880-T-C DYZ19 +
22242067-T-A 20080181-T-A DYZ19 +
19735410-CTATTTTATTT-C 17623530-CTATTTTATTT-C P5_Prx 5×TATTT+
22308908-A-G 20147022-A-G DYZ19 +
4581419-T-A 4713378-T-A Y38546 +
6924423-C-T 7056382-C-T BY62218 YY+
7162005-T-C 7293964-T-C Y38846 YY+
7364651-C-T 7496610-C-T BY64792 YY+
7802713-A-G 7934672-A-G BY67787 YY+
8361195-T-C 8493154-T-C BY71992 YY+
8457411-C-A 8589370-C-A Y11648 YY+
9124560-G-C 9286951-G-C BY78323 Y+
14222412-C-T 12101706-C-T F1732 YY+
16756744-T-C 14644864-T-C BY109857 YY+
16958012-T-TCA 14846132-T-TCA +
17652091-T-C 15540211-T-C YY+
17945441-T-C 15833561-T-C Y11647 YY+
17970416-C-A 15858536-C-A BY118805 YY+
18124512-T-C 16012632-T-C Y3607 YY+
19094941-A-T 16983061-A-T BY126218 YY+
19241612-C-A 17129732-C-A Y10639 YY+
19420298-C-A 17308418-C-A Y3602 YY+
22227785-C-A 20065899-C-A DYZ19 +
22237811-C-A 20075925-C-A BY19486 DYZ19 +
22252091-C-A 20090205-C-A BY1869 DYZ19 +
22280809-G-C 20118923-G-C BY215971 DYZ19 +
22308846-ACG-A 20146960-ACG-A DYZ19 +
22308889-G-T 20147003-G-T ZS7386 DYZ19 +
22803391-T-C 20641505-T-C Y3601 YY+
22948319-C-G 20786433-C-G Y3604 YY+
22977355-C-T 20815469-C-T BY142175 YY+
28626962-C-T 26480815-C-T BY150798 Y+
22454456-A-AC 20292570-A-AC DYZ19 **
22242214-T-C 20080328-T-C DYZ19 **
22242215-A-C 20080329-A-C DYZ19 **
2773548-G-T 2905507-G-T **
22227756-T-G 20065870-T-G DYZ19 **
22227794-T-G 20065908-T-G DYZ19 **
22242057-T-G 20080171-T-G BY25097 DYZ19 **
22242058-T-G 20080172-T-G BY25098 DYZ19 **
22242073-G-A 20080187-G-A BY25099 DYZ19 **
22242076-G-A 20080190-G-A BY1863 DYZ19 **
22325380-C-A 20163494-C-A DYZ19 **
22365664-T-A 20203778-T-A DYZ19 **
14181107-C-T 12060401-C-T Z301/S499Z301 S499 **
22308918-A-C 20147032-A-C DYZ19 **
27034400-T-G 24888253-T-G P1_r4 **
22452799-G-T 20290913-G-T PF1174 DYZ19 **
13593973-C-T 11438297-C-T BY86569 **
13623876-G-C 11468200-G-C BY48163 **
22227757-G-A 20065871-G-A DYZ19 **
22227793-T-G 20065907-T-G DYZ19 **
22245340-A-C 20083454-A-C DYZ19 **
22308917-C-T 20147031-C-T DYZ19 **
22312634-T-C 20150748-T-C BY49284 DYZ19 **
22312635-C-T 20150749-C-T BY47308 DYZ19 **
22368789-T-A 20206903-T-A DYZ19 **
27736444-GA-G 25590297-GA-G P1_Y2 **
13321328-TAAAAC-T 11165652-TAAAAC-T ***
13448791-C-T 11293115-C-T ***
13451716-CTCCACTCCAGTCCAT-C,CTCCACTCCAT 11296040-CTCCACTCCAGTCCAT-C,CTCCACTCCAT ***
13453780-T-A 11298104-T-A ***
13664499-C-G 11508823-C-G ***
22358404-G-A 20196518-G-A DYZ19 ***
22361680-A-T 20199794-A-T DYZ19 ***
25252288-CATT-C 23106141-CATT-C P2_r1 13×ATT***
22361238-T-C 20199352-T-C DYZ19 ***
22361252-C-G 20199366-C-G DYZ19 ***
22455851-A-AC 20293965-A-AC DYZ19 ***
13453794-A-G 11298118-A-G ***
13456278-T-A 11300602-T-A ***
13456305-A-T 11300629-A-T ***
13456331-T-A 11300655-T-A ***
9981481-G-A 10143872-G-A ***
26269483-A-ATTATT 24123336-A-ATTATT P1_Y1 5×TTATT***
13801062-C-T 11680356-C-T ***
13863669-G-C 11742963-G-C ***
13864526-G-T 11743820-G-T ***
13867442-T-A 11746736-T-A ***
10020819-C-G 10183210-C-G ***
13456324-C-A 11300648-C-A ***
13654428-A-G 11498752-A-G ***
22455319-T-C 20293433-T-C DYZ19 ***
22486803-G-A 20324917-G-A DYZ19 ***
28806018-A-C 26659871-A-C ***
9992531-CA-C 10154922-CA-C ***
9992553-G-A 10154944-G-A ***
13480291-C-T 11324615-C-T ***
23891147-GT-G 21729261-GT-G 15×T***
58982846-C-T 56836699-C-T ***
9983862-C-T 10146253-C-T ***
13447441-AGTG-A 11291765-AGTG-A ***
22481273-C-A 20319387-C-A DYZ19 ***
58982943-G-T 56836796-G-T ***
13863699-T-A 11742993-T-A ***
22489987-A-T 20328101-A-T DYZ19 ***
22455263-T-G 20293377-T-G DYZ19 ***
58983625-C-A 56837478-C-A ***
9304444-CA-C,CG 9466835-CA-C,CG ***
9984927-C-A 10147318-C-A ***
22453442-T-A 20291556-T-A DYZ19 ***
13136703-G-GA 10626189-G-GA ***
13862120-G-A 11741414-G-A ***
22363420-T-A 20201534-T-A DYZ19 ***
13453918-CACT-C 11298242-CACT-C ***
13826713-T-G 11706007-T-G ***
22361700-A-T 20199814-A-T DYZ19 ***
13453798-C-A 11298122-C-A ***
13664673-G-C 11508997-G-C ***
22452082-C-T 20290196-C-T DYZ19 ***
22453788-G-A 20291902-G-A DYZ19 ***
10016664-G-A 10179055-G-A ***
10016696-C-T 10179087-C-T ***
22481421-C-G 20319535-C-G DYZ19 ***
13859780-A-G 11739074-A-G ***
13810974-G-A 11690268-G-A ***
13867077-A-G 11746371-A-G ***
13863298-G-T 11742592-G-T ***
22357811-C-G 20195925-C-G DYZ19 ***
22361729-T-C 20199843-T-C DYZ19 ***
24916442-A-AT 22770295-A-AT g1 8×T***
13820775-TATGGAATGGA-T,TATCGAATGGA 11700069-TATGGAATGGA-T,TATCGAATGGA 11×ATGGA***
22490508-T-G 20328622-T-G DYZ19 ***
13464515-C-A,G 11308839-C-A,G ***
13810960-A-ATTGGC 11690254-A-ATTGGC ***
13811004-G-T 11690298-G-T FT126563 ***
13811008-G-A 11690302-G-A ***
9981725-G-C 10144116-G-C BY14107 ***
13654433-A-G 11498757-A-G ***
13862141-G-A 11741435-G-A ***
22309641-C-T 20147755-C-T BY22455 DYZ19 ***
13809758-G-T 11689052-G-T ***
10034407-G-T 10196798-G-T ***
22455266-C-G 20293380-C-G DYZ19 ***
25129763-C-CT 22983616-C-CT g1 11×T***
13851240-T-A 11730534-T-A FT328738 ***
13654441-T-A 11498765-T-A ***
22454978-C-T 20293092-C-T DYZ19 ***
13323005-CACTT-C 11167329-CACTT-C ***
22247413-G-A 20085527-G-A DYZ19 ***
22247429-T-G 20085543-T-G DYZ19 ***
22247435-C-T 20085549-C-T DYZ19 ***
25290659-T-C 23144512-T-C P2_r1 ***
22360501-C-A 20198615-C-A DYZ19 ***
13138209-CCCATT-C,TCCATC 10627695-CCCATT-C,TCCATC ***
13453143-C-T 11297467-C-T ***
22455243-T-C 20293357-T-C DYZ19 ***
22453577-C-G 20291691-C-G DYZ19 ***
13453775-T-G 11298099-T-G ***
13453779-C-CA 11298103-C-CA ***
22282073-G-T 20120187-G-T DYZ19 ***
9984913-G-A 10147304-G-A ***
9292826-T-C 9455217-T-C ***
58979929-C-A 56833782-C-A ***
22454290-G-A 20292404-G-A DYZ19 ***
22447877-G-A 20285991-G-A BY24507 DYZ19 ***
58973896-T-A 56827749-T-A ***
58982878-TTCTAC-T 56836731-TTCTAC-T ***
13449759-CATTCT-C,CATTCC 11294083-CATTCT-C,CATTCC ***
9959235-T-C 10121626-T-C ***
22247434-A-T 20085548-A-T DYZ19 ***
22265453-A-T 20103567-A-T BY22468 DYZ19 ***
22454265-G-A 20292379-G-A DYZ19 ***
23843594-TTATCTATC-T 21681708-TTATCTATC-T FGC9722 10×TATC***
10020845-CTCTG-C 10183236-CTCTG-C ***
22454260-G-T 20292374-G-T DYZ19 ***
13467127-T-A 11311451-T-A ***
22343991-T-A 20182105-T-A DYZ19 ***
58976672-TATTCCATTGCATTCTGCTGA-T,TATTCCATTGC 56830525-TATTCCATTGCATTCTGCTGA-T,TATTCCATTGC ***
22454197-G-C 20292311-G-C DYZ19 ***
13867506-G-GCATTC 11746800-G-GCATTC ***
22309880-T-A 20147994-T-A A4110 DYZ19 ***
22363265-T-C 20201379-T-C DYZ19 ***
22363477-T-G 20201591-T-G DYZ19 ***
10034418-T-C 10196809-T-C ***
10034422-G-T 10196813-G-T ***
10034425-G-A 10196816-G-A FT399470 ***
10034431-G-A 10196822-G-A ***
10034432-A-G 10196823-A-G ***
25042434-T-C 22896287-T-C BY44115 g1 ***
9984915-G-A 10147306-G-A BY34010 ***
13810949-GAACAA-G 11690243-GAACAA-G ***
13860288-T-G 11739582-T-G ***
13859874-C-T 11739168-C-T ***
13860262-A-T 11739556-A-T ***
13801176-CT-C 11680470-CT-C ***
10016716-G-GA 10179107-G-GA ***
10016724-T-C 10179115-T-C ***
9937352-T-A 10099743-T-A ***
22247440-A-G 20085554-A-G DYZ19 ***
13810632-T-C 11689926-T-C ***
13801224-GAATAT-G 11680518-GAATAT-G ***
13599500-A-C 11443824-A-C ***
25829903-G-A 23683756-G-A P1_b3 ***
13810672-T-C 11689966-T-C ***
13810674-G-A 11689968-G-A ***
13810678-G-T 11689972-G-T FGC78720 ***
22454757-A-G,T 20292871-A-G,T DYZ19 ***
13676167-G-A 11520491-G-A ***
58977552-ATTCTG-A,ATTCCGTTTCA 56831405-ATTCTG-A,ATTCCGTTTCA ***
22247424-G-T 20085538-G-T DYZ19 ***
22290412-C-G 20128526-C-G DYZ19 ***
22290419-T-C 20128533-T-C DYZ19 ***
13838504-A-ATCAGT 11717798-A-ATCAGT ***
19949017-G-T 17837137-G-T BY28117 P5_Prx ***
19949035-A-G 17837155-A-G P5_Prx ***
19949037-T-C 17837157-T-C P5_Prx ***
24170844-G-A 22024697-G-A P3_b1 ***
58978022-TTGCAT-T,TTACA 56831875-TTGCAT-T,TTACA ***
7485582-C-G 7617541-C-G IR1_L ***
13726957-T-C 11571281-T-C ***
22240517-G-A 20078631-G-A DYZ19 ***
22251012-T-A 20089126-T-A FGC41671 DYZ19 ***
22284899-T-A 20123013-T-A FGC54028 DYZ19 ***
22343750-T-G 20181864-T-G DYZ19 ***
22361358-G-A 20199472-G-A DYZ19 ***
22361736-A-T 20199850-A-T DYZ19 ***
22364119-G-T 20202233-G-T DYZ19 ***
22485070-T-G 20323184-T-G DYZ19 ***
22490472-T-C 20328586-T-C BY205490 DYZ19 ***
23667221-A-C 21505335-A-C P19_2 ***
23679393-G-A 21517507-G-A ***
23716662-A-T 21554776-A-T A13393 ***
23899412-G-C 21737526-G-C ***
23899414-G-T 21737528-G-T ***
24155635-T-G 22009488-T-G P3_b1 ***
24198529-G-A 22052382-G-A P3_b1 ***
24224812-G-A 22078665-G-A P3_b1 ***
24945450-C-T 22799303-C-T g1 ***
24971953-T-A 22825806-T-A g1 ***
25065916-A-T 22919769-A-T g1 ***
25072518-G-C 22926371-G-C A13973 g1 ***
25076137-G-T 22929990-G-T A13974 g1 ***
25100626-A-G 22954479-A-G A13976 g1 ***
25117358-C-T 22971211-C-T g1 ***
25123579-T-A 22977432-T-A g1 ***
25144948-A-G 22998801-A-G A18163 g1 ***
25154986-A-T 23008839-A-T A13978 g1 ***
25169038-G-C 23022891-G-C A13979 g1 ***
25181302-C-G 23035155-C-G A13980 g1 ***
25219462-G-A 23073315-G-A P2_r1 ***
25221793-T-C 23075646-T-C P2_r1 ***
25222200-A-G 23076053-A-G A13982 P2_r1 ***
25266094-C-T 23119947-C-T P2_r1 ***
25284894-C-T 23138747-C-T P2_r1 ***
25303979-T-C 23157832-T-C P2_r1 ***
25820341-A-G 23674194-A-G A17036 P1_b3 ***
26265942-C-A 24119795-C-A P1_Y1 ***
26576647-C-T 24430500-C-T A13267 BY2484 P1_g2 ***
26661345-G-C 24515198-G-C P1_g2 ***
14429405-TTA-T 12308680-T-. 15×TA***
13453742-A-T 11298066-A-T ***
13847524-T-C 11726818-T-C BY91312 ***
25309730-A-G 23163583-A-G P2_r1 ***
22466382-G-A 20304496-G-A BY221720 DYZ19 ***
13454807-T-A 11299131-T-A ***
25309719-G-C 23163572-G-C P2_r1 ***
22357845-T-C,G 20195959-T-C,G DYZ19 ***
22282183-G-C 20120297-G-C DYZ19 ***
13453766-TATATTC-T 11298090-TATATTC-T ***
22490468-TG-T 20328582-TG-T DYZ19 ***
22455823-C-G 20293937-C-G DYZ19 ***
22455826-G-A 20293940-G-A DYZ19 ***
58979803-CCTATTCCATTCCTCT-C,TCTATTCCATTCCTCG 56833656-CCTATTCCATTCCTCT-C,TCTATTCCATTCCTCG ***
13138751-C-T 10628237-C-T ***
13732638-A-G 11576962-A-G ***
22508564-C-A,G 20346678-C-A,G DYZ19 ***
9240049-T-C 9402440-T-C ***
22362697-T-C 20200811-T-C DYZ19 ***
22469330-CAG-C,CAA 20307444-CAG-C,CAA DYZ19 ***
22469354-T-C 20307468-T-C DYZ19 ***
22469370-T-C 20307484-T-C DYZ19 ***
22469427-C-G 20307541-C-G BY222225 DYZ19 ***
13453722-T-A 11298046-T-A ***
13862109-T-A 11741403-T-A ***
22453569-G-A 20291683-G-A DYZ19 ***
22291877-T-C 20129991-T-C DYZ19 ***
22282030-T-G 20120144-T-G DYZ19 ***
22309837-G-C 20147951-G-C DYZ19 ***
22282175-A-G 20120289-A-G DYZ19 ***
22282171-G-T 20120285-G-T DYZ19 ***
24168617-T-C 22022470-T-C P3_b1 ***
3640997-CTT-C,TTT 3772956-CTT-C,TTT ***
3641000-TCC-T 3772959-TCC-T ***
6120988-C-T 6252947-C-T ***
6229510-C-T 6361469-C-T FT62706 IR3_Dst ***
6276972-A-C 6408931-A-C IR3_Dst ***
13697659-A-T 11541983-A-T ***
19682553-C-G,T 17570673-C-G,T P5_Prx ***
19880475-C-T 17768595-C-T P5_Prx ***
19939512-G-C 17827632-G-C P5_Prx ***
22276644-C-T 20114758-C-T DYZ19 ***
22283044-G-T 20121158-G-T DYZ19 ***
22284826-T-C 20122940-T-C DYZ19 ***
22290027-G-C 20128141-G-C DYZ19 ***
22290038-CG-C 20128152-CG-C DYZ19 ***
22308844-T-TAG 20146958-T-TAG DYZ19 ***
22343738-A-G 20181852-A-G DYZ19 ***
22360746-T-G 20198860-T-G DYZ19 ***
22361819-T-A 20199933-T-A DYZ19 ***
22362551-G-A 20200665-G-A DYZ19 ***
22452828-C-T 20290942-C-T PF1175 DYZ19 ***
22452952-C-G 20291066-C-G DYZ19 ***
22452975-C-A 20291089-C-A DYZ19 ***
22453406-T-A 20291520-T-A DYZ19 ***
22455855-T-A 20293969-T-A DYZ19 ***
22455856-G-C 20293970-G-C DYZ19 ***
22466374-C-T 20304488-C-T BY25352 DYZ19 ***
22479339-G-C 20317453-G-C 6872917-G-ABY48292 DYZ19 ***
22490451-G-T 20328565-G-T BY196892 DYZ19 ***
22502393-C-T 20340507-C-T DYZ19 ***
23714274-A-T 21552388-A-T ***
24928845-C-T 22782698-C-T g1 ***
24988198-G-A 22842051-G-A g1 ***
25080719-G-A 22934572-G-A g1 ***
25101696-CACCTAGGGAATGTGACT-C 22955549-CACCTAGGGAATGTGACT-C g1 ***
25136250-T-C 22990103-T-C g1 ***
25196164-T-C 23050017-T-C g1 ***
25205370-G-A 23059223-G-A A15915 g1 ***
25213106-T-A 23066959-T-A P2_r1 ***
25253784-T-C 23107637-T-C P2_r1 ***
25309751-A-T 23163604-A-T P2_r1 ***
26084860-TTTATTATTA-T 23938713-TTTATTATTA-T P1_Y1 10×TTA***
26225980-GT-G 24079833-GT-G P1_Y1 ***
26252978-CAG-C 24106831-CAG-C P1_Y1 ***
26562589-C-T 24416442-C-T P1_g2 ***
26714466-G-A 24568319-G-A P1_g2 ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.