Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > DF49/S474 > Z2980 > Z2976 > DF23 > Z2961 > M222 > DF106 > DF104 > DF105 > FGC4133 > FGC4134 > FGC4125 > FGC4119

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFGC
3O8XS
17941082-C-T 15829202-C-T YY+
23802008-G-A 21640122-G-A Y+
15672483-G-C 13560603-G-C Y+
19516303-C-G 17404423-C-G YY+
3364860-AG-A 3496819-AG-A +
21818891-T-G 19657005-T-G YY+
2728127-G-A 2860086-G-A YY+
13313296-C-T 11157620-C-T +
2770984-G-A 2902943-G-A Y+
7077471-CACAT-C 7209430-CACAT-C **
26060168-C-CAAAAAA 23914021-C-CAAAAAA P1_Y1 39×A**
13463954-C-CTGCT 11308278-C-CTGCT **
5261698-C-CAAAAAAAAAAAAAAAAAAAAAAAAAAA 5393657-C-CAAAAAAAAAAAAAAAAAAAAAAAAAAA 48×A**
27714925-GA-G 25568778-GA-G P1_Y2 10×A**
17277481-TCACA-T 15165601-TCACA-T 20×CA**
3197506-C-A 3329465-C-A **
21556919-C-CTTTTTTTTTTTTTTT 19395033-C-CTTTTTTTTTTTTTTT 23×T**
26902286-C-CAAAAA 24756139-C-CAAAAA P1_r3 34×A**
5241786-TAC-T 5373745-TAC-T 16×AC**
13440600-T-C 11284924-T-C **
13517191-G-C 11361515-G-C **
13544839-C-A 11389163-C-A **
13565045-C-A 11409369-C-A **
28582622-G-A 26436475-G-A **
13108522-A-G 10598008-A-G ***
58831498-G-A 56759373-C-T ***
13108716-ACTATG-TGTAC 10598202-ACTATG-TGTAC ***
15733879-C-CAAAAAAA 13621999-C-CAAAAAAA 25×A***
15101911-G-A 12989999-G-A ***
22361163-G-T 20199277-G-T DYZ19 ***
10090757-A-C 10253148-A-C ***
13747961-G-T 11592285-G-T ***
58910478-C-G 56680393-G-C ***
9303934-G-A 9466325-G-A ***
13122139-A-C 10611625-A-C ***
13122126-T-C 10611612-T-C ***
22308878-GTAAAGAG-ATCCAGAA 20146992-GTAAAGAG-ATCCAGAA DYZ19 ***
13108685-CCA-ACG 10598171-CCA-ACG ***
8426377-GCTTCTTCTTCTT-G 8558336-GCTTCTTCTTCTT-G 22×CTT***
22308892-C-G 20147006-C-G DYZ19 ***
22234440-TTTAAA-ATCAAG 20072554-TTTAAA-ATCAAG DYZ19 ***
13541288-G-A 11385612-G-A ***
13798573-N-C 11677867-C-. ***
58823348-A-T 56767523-T-A ***
58831542-C-A 56759329-G-T ***
13140123-TCGC-T 10629609-TCGC-T ***
22250557-A-G 20088671-A-G DYZ19 ***
22500425-A-T 20338539-A-T DYZ19 ***
13257515-A-T 11101839-A-T ***
28802794-GACATGAA-AACTGGAG 26656647-GACATGAA-AACTGGAG ***
22481719-G-T 20319833-G-T DYZ19 ***
22226527-A-T 20064641-A-T DYZ19 ***
18612759-G-GTATA 16500879-G-GTATA 15×TA***
22234411-C-G 20072525-C-G DYZ19 ***
15646542-AT-A 13534662-AT-A 14×T***
22292707-A-T 20130821-A-T DYZ19 ***
13488480-GCAGT-ACAGG 11332804-GCAGT-ACAGG ***
13728337-A-G 11572661-A-G ***
22358631-TTTG-CTTT 20196745-TTTG-CTTT DYZ19 ***
13108692-A-G 10598178-A-G ***
13484461-TGCCCC-ATCCCA 11328785-TGCCCC-ATCCCA ***
22495101-T-G 20333215-T-G DYZ19 ***
58894535-C-T 56696336-G-A ***
16598677-G-GA 14486797-G-GA 19×A***
58908489-A-C 56682382-T-G ***
22503716-T-G 20341830-T-G DYZ19 ***
22244998-C-T 20083112-C-T DYZ19 ***
19632714-T-C 17520834-T-C P5_Prx ***
22248375-GTT-TTTTA 20086489-GTT-TTTTA DYZ19 ***
13611988-G-GTTTTTTTTT 11456312-G-GTTTTTTTTT 19×T***
13733993-ATTCG-GTTCA 11578317-ATTCG-GTTCA ***
14219714-C-CAAAAAAA 12099008-C-CAAAAAAA 14×A***
18395723-TTATATATATATA-T 16283843-TTATATATATATA-T P6_Gap 27×TA***
19632830-CTTT-TTTG 17520950-CTTT-TTTG P5_Prx ***
20025483-C-CCCCCCT 17913603-C-CCCCCCT P5_Prx ***
21148589-C-CAAAAAAAAA 18986703-C-CAAAAAAAAA 30×A***
21409460-C-CAAAAA 19247574-C-CAAAAA 30×A***
21853677-C-CAAAAA 19691791-C-CAAAAA 43×A***
22234381-TCTGC-CCTCT 20072495-TCTGC-CCTCT DYZ19 ***
22234421-AAACTCTGGAC-GAACACAGGAT 20072535-AAACTCTGGAC-GAACACAGGAT DYZ19 ***
22248379-CT-C 20086493-CT-C DYZ19 ***
13374271-GA-CAAAACAAAACAAAACAAAAC 11218595-GA-CAAAACAAAACAAAACAAAAC ***
22273615-AACAG-CAGAT 20111729-AACAG-CAGAT DYZ19 ***
22309373-AAGGT-CAGGC 20147487-AAGGT-CAGGC DYZ19 ***
22962414-G-GTTTTTTT 20800528-G-GTTTTTTT 20×T***
24388091-T-TAC 22241944-T-TAC ***
24686428-C-CTTTTTTTGTT 22540281-C-CTTTTTTTGTT P3_b2 23×T***
26060192-A-AAAAAAAAAAAAC 23914045-A-AAAAAAAAAAAAC P1_Y1 ***
27462752-GAAG-AAAA 25316605-GAAG-AAAA P1_Y2 ***
28787089-CCG-C 26640942-CCG-C ***
58840403-ATCA-TTAT 56750465-TGAT-ATAA ***
58843635-CATTC-GA 56747232-GAATG-TC ***
58843641-AG-A 56747228-GC-G ***
58903742-GATTCCATTCCATTCT-G 56687103-AGGAATGGAATAGAAT-A ***
13606877-C-CAAAAAAAAAAAA 11451201-C-CAAAAAAAAAAAA 25×A***
13132842-CA-C 10622328-CA-C 20×A***
19632759-C-A 17520879-C-A P5_Prx ***
58857561-C-G 56733310-G-C ***
13516804-A-G 11361128-A-G ***
22273978-G-T 20112092-G-T DYZ19 ***
22292727-G-C 20130841-G-C DYZ19 ***
22491391-T-A 20329505-T-A DYZ19 ***
22504363-G-T 20342477-G-T DYZ19 ***
23569172-G-C 21407286-G-C ***
26499944-G-T 24353797-G-T P1_Y1 ***
26500874-C-T 24354727-C-T P1_Y1 ***
27443020-C-T 25296873-C-T P1_Y2 ***
27462768-C-T 25316621-C-T P1_Y2 ***
58831552-C-G 56759319-G-C ***
58847264-C-G 56743607-G-C ***
58885397-A-T 56705474-T-A ***
13122102-GTA-CTG 10611588-GTA-CTG ***
58889854-T-C 56701017-A-G ***
5733183-A-AT 5865142-A-AT 10×T***
6768762-G-GAAAA 6900721-G-GAAAA 17×A***
7394141-GTA-TTG 7526100-GTA-TTG ***
7394152-CTTTG-ATTTA 7526111-CTTTG-ATTTA ***
9342864-GT-TG 9505255-GT-TG ***
9429667-C-CTTAATAAAAA 9592058-C-CTTAATAAAAA 25×A***
9524080-C-CAT 9686471-C-CAT ***
9839545-CAAAAAA-C 10001936-CAAAAAA-C 23×A***
10090701-AGACC-GGTAG 10253092-AGACC-GGTAG ***
10090723-TCA-CCT 10253114-TCA-CCT ***
13108511-TA-T 10597997-TA-T ***
13516825-C-T 11361149-C-T ***
10050076-C-T 10212467-C-T ***
13514917-G-A 11359241-G-A ***
13108658-A-T 10598144-A-T ***
58836512-C-T 56754359-G-A ***
9945414-CGTCTG-TGCCTA 10107805-CGTCTG-TGCCTA ***
13514892-TGAG-T 11359216-TGAG-T ***
22341613-ACAGA-CCAGC 20179727-ACAGA-CCAGC DYZ19 ***
28804551-CT-TC 26658404-CT-TC ***
58903878-ATTCCTTTCCATTAAT-A 56686973-TGGAAATTAATGGAAA-T ***
22357251-C-G 20195365-C-G DYZ19 ***
58868293-G-A 56722578-C-T ***
22353019-G-T 20191133-G-T DYZ19 ***
22353020-T-C 20191134-T-C DYZ19 ***
19632723-A-G 17520843-A-G P5_Prx ***
22341680-C-CT 20179794-C-CT DYZ19 ***
13108675-C-T 10598161-C-T ***
22252668-T-A 20090782-T-A DYZ19 ***
13454827-CATTCT-C 11299151-CATTCT-C ***
23951427-N-NT 21805280-N-NT ***
13476340-AT-CA 11320664-AT-CA ***
13129710-TACATATC-CACACATT 10619196-TACATATC-CACACATT ***
22358682-G-C 20196796-G-C DYZ19 ***
58841167-T-C 56749704-A-G ***
22309319-CT-GA 20147433-CT-GA DYZ19 ***
22309351-GTCTAGAA-ATCCAGAG 20147465-GTCTAGAA-ATCCAGAG DYZ19 ***
22341673-AC-A 20179787-AC-A DYZ19 ***
59024013-A-AGGGAG 56877866-A-AGGGAG ***
13129662-T-TC 10619148-T-TC ***
22250496-C-A 20088610-C-A DYZ19 ***
22231844-A-C 20069958-A-C DYZ19 ***
22496162-T-A 20334276-T-A DYZ19 ***
22252666-G-T 20090780-G-T DYZ19 ***
13476003-T-G 11320327-T-G ***
3993467-C-CA 4125426-C-CA 16×A***
22281898-T-C 20120012-T-C DYZ19 ***
22308969-C-T 20147083-C-T DYZ19 ***
15799177-CTCTTTCTT-C 13687297-CTCTTTCTT-C 13×TCTT***
13468947-T-G 11313271-T-G ***
13129723-C-G 10619209-C-G ***
22495731-G-A 20333845-G-A DYZ19 ***
58826761-T-A 56764110-A-T ***
58841073-C-T 56749798-G-A ***
58846705-G-C 56744166-C-G ***
58874973-T-G 56715898-A-C ***
58912398-C-T 56678473-G-A ***
19183814-C-CTTT 17071934-C-CTTT 28×T***
13688565-AGA-GGG 11532889-AGA-GGG ***
22252665-T-A 20090779-T-A DYZ19 ***
21824255-C-CAAAAA 19662369-C-CAAAAA 30×A***
22236464-CCCACCAAGG-ACCAGTAAGT 20074578-CCCACCAAGG-ACCAGTAAGT DYZ19 ***
22365801-TTTCG-GTTTA 20203915-TTTCG-GTTTA DYZ19 ***
22365859-GCA-TAG 20203973-GCA-TAG DYZ19 ***
22421783-GC-CT 20259897-GC-CT DYZ19 ***
22480694-ATTAAAGT-CTTAAAGG 20318808-ATTAAAGT-CTTAAAGG DYZ19 ***
58844015-TATTCACTTCCATTTCC-T 56746835-CGAATGGAAATGGAAGT-C ***
13467436-C-A 11311760-C-A ***
13561928-G-A 11406252-G-A FGC7973 ***
22236377-G-C 20074491-G-C DYZ19 ***
22252653-T-C 20090767-T-C DYZ19 ***
22252657-C-G 20090771-C-G DYZ19 ***
22252662-A-T 20090776-A-T DYZ19 ***
22231847-T-G 20069961-T-G DYZ19 ***
22341863-A-C 20179977-A-C DYZ19 ***
13257526-G-A 11101850-G-A ***
13728570-GA-TG 11572894-GA-TG ***
59007432-CTTT-C 56861285-CTTT-C 18×T***
3428653-T-C 3560612-T-C ***
7394133-A-T 7526092-A-T ***
22250523-T-A 20088637-T-A DYZ19 ***
26462884-G-A 24316737-G-A P1_Y1 ***
22244924-G-GA 20083038-G-GA DYZ19 ***
22499831-A-G 20337945-A-G DYZ19 ***
22310979-T-A 20149093-T-A DYZ19 ***
13440575-T-G 11284899-T-G ***
58868662-G-A 56722209-C-T ***
6131160-CAG-GCA 6263119-CAG-GCA ***
13728623-TA-AG 11572947-TA-AG ***
18735674-C-CTTTTT 16623794-C-CTTTTT 24×T***
22297112-AGTTTG-TTTTT 20135226-AGTTTG-TTTTT DYZ19 ***
13110833-G-A 10600319-G-A ***
13595280-T-C 11439604-T-C FGC8084 ***
18028704-CATACA-C 15916824-CATACA-C 12×ATACA***
22265063-G-T 20103177-G-T DYZ19 ***
7383881-G-A 7515840-G-A ***
13480995-CAAGA-TAAGT 11325319-CAAGA-TAAGT ***
22236485-A-T 20074599-A-T DYZ19 ***
5453891-C-CTTTTT 5585850-C-CTTTTT 19×T***
3442145-C-A 3574104-C-A ***
22502815-A-T 20340929-A-T DYZ19 ***
10090681-A-G 10253072-A-G ***
26463097-C-CTTTTTTT 24316950-C-CTTTTTTT P1_Y1 36×T***
22491270-A-G 20329384-A-G S3099 DYZ19 ***
22501960-A-T 20340074-A-T DYZ19 ***
18297876-C-CTTTTTT 16185996-C-CTTTTTT P6_Prx 31×T***
13488510-AG-CA 11332834-AG-CA ***
13476078-A-C 11320402-A-C ***
58843700-C-G 56747171-G-C ***
22365796-G-A 20203910-G-A DYZ19 ***
58847479-GCATTCCATTC-G 56743371-CGAATGGAATG-C 4×CATTC***
22273963-T-A 20112077-T-A DYZ19 ***
22273984-A-G 20112098-A-G DYZ19 ***
22309121-T-G 20147235-T-G DYZ19 ***
22310703-C-T 20148817-C-T DYZ19 ***
22310747-C-A 20148861-C-A DYZ19 ***
22358465-A-T 20196579-A-T DYZ19 ***
22500158-C-G 20338272-C-G DYZ19 ***
58831551-TCATTC-CGATGA 56759315-GAATGA-TCATCG ***
58906363-C-CCATTCCTTTCGATTG 56684501-T-TGGAATGCAATCGAAA ***
58889819-T-C 56701052-A-G ***
3587292-C-CTTTTT 3719251-C-CTTTTT 22×T***
58868288-A-C 56722583-T-G ***
9190971-A-AAC 9353362-A-AAC 18×AC***
13267597-C-CAAAAAAAA 11111921-C-CAAAAAAAA 11×A***
13488598-ACGA-GCGC 11332922-ACGA-GCGC ***
13723574-TTCA-CTGC 11567898-TTCA-CTGC ***
7483026-A-T 7614985-A-T IR1_L 29×T***
22420880-A-G 20258994-A-G DYZ19 ***
22264034-C-T 20102148-C-T DYZ19 ***
58838545-G-C 56752326-C-G ***
22231845-G-A 20069959-G-A DYZ19 ***
22234945-G-C 20073059-G-C DYZ19 ***
22234968-G-C 20073082-G-C DYZ19 ***
22234995-A-T 20073109-A-T DYZ19 ***
58912892-CTATTCC-TGAGTCA 56677973-GGAATAG-TGACTCA ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 3O8XS14663658102857498434850
Used in age calculations14663658102857498434850
Counts of SNPs65
Variant counts last updated 2017-12-15 23:49:06.



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