Stephenson

FTDNA: 224640, BigY2: 224640

Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > L1335/S530 > L1065 > Z16329

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
224640		BigY2
224640
19600438-C-T 17488558-C-T P5_Prx YA*
22307601-G-T 20145715-G-T DYZ19 ***A*
28817123-T-G 26670976-T-G A*
7183249-G-A 7315208-G-A YY++
18169867-A-T 16057987-A-T YY++
17071752-A-T 14959872-A-T YY++
16985252-G-A 14873372-G-A YY++
14818971-C-T 12707042-C-T YY++
14516060-C-T 12404261-C-T YY++
22042288-C-G 19880402-C-G YY++
14485065-C-T 12364334-C-T YY**+
10017452-C-G 10179843-C-G Y***+
7879953-G-C 8011912-G-C YY++
7263536-A-G 7395495-A-G YY++
14485066-A-C 12364335-A-C YY**+
22526574-A-G 20364688-A-G Y++
21265445-T-A 19103559-T-A YY++
23814204-A-G 21652318-A-G Y++
19139499-A-T 17027619-A-T YY++
22294739-C-G 20132853-C-G DYZ19 ****
14755525-C-A 12643594-C-A **
14740352-C-A 12628420-C-A **
14740215-G-T 12628283-G-T **
14726057-G-A 12614125-G-A **
14724598-C-A 12612666-C-A **
14701402-C-T 12589468-C-T **
14685754-G-T 12573820-G-T **
14584744-C-A 12472944-C-A **
14561369-T-C 12449570-T-C **
6605511-TTATA-T 6737470-TTATA-T 14×TA**
14552414-C-A 12440615-C-A **
14785692-C-A 12673762-C-A **
14807378-C-A 12695449-C-A **
14844967-C-T 12733033-C-T **
14862997-A-C 12751063-A-C **
14887913-C-A 12775979-C-A **
14938657-T-C 12826731-T-C **
14977366-T-A 12865441-T-A **
15012477-G-T 12900565-G-T **
15084630-C-A 12972720-C-A **
15108971-A-T 12997058-A-T **
15128213-C-A 13016300-C-A **
15145066-A-G 13033153-A-G **
15146611-A-T 13034698-A-T **
14554431-C-T 12442632-C-T **
14396497-A-C 12275793-A-C **
14527659-A-C 12415860-A-C **
14219508-T-G 12098802-T-G **
14031842-G-T 11911136-G-T **
14046634-C-A 11925928-C-A **
14079644-C-A 11958938-C-A **
14080379-G-T 11959673-G-T **
14114986-C-A 11994280-C-A **
14118281-T-C 11997575-T-C **
14128287-C-A 12007581-C-A **
14144014-A-C 12023308-A-C **
14176166-C-A 12055460-C-A **
14187280-C-A 12066574-C-A **
14271325-G-T 12150619-G-T **
14527608-C-A 12415809-C-A **
14324430-G-C 12203724-G-C **
14349292-A-G 12228587-A-G **
14352724-A-T 12232019-A-T **
15157342-C-A 13045429-C-A **
14412939-C-A 12292236-C-A **
14425446-C-A 12304721-C-A **
14463560-C-A 12342833-C-A **
14471783-C-A 12351052-C-A **
14513177-C-A 12401382-C-A **
14526552-A-T 12414753-A-T **
15156714-C-A 13044801-C-A **
15606445-C-T 13494565-C-T **
15171279-A-T 13059365-A-T **
16075930-A-G 13964050-A-G **
15988165-C-T 13876285-C-T **
16002030-T-C 13890150-T-C **
16004488-G-T 13892608-G-T **
16014797-G-T 13902917-G-T **
16014859-G-T 13902979-G-T **
16045023-C-A 13933143-C-A **
16045241-C-A 13933361-C-A **
16048873-C-A 13936993-C-A **
16048949-G-A 13937069-G-A **
16050875-C-A 13938995-C-A **
16079231-G-T 13967351-G-T Y26875 **
15967492-T-A 13855612-T-A **
16084068-C-G 13972188-C-G **
16228003-A-G 14116123-A-G **
16244859-G-C 14132979-G-C **
16292544-A-G 14180664-A-G **
16292766-C-A 14180886-C-A **
16317771-G-T 14205891-G-T **
16317880-C-A 14206000-C-A **
16319782-A-G 14207902-A-G **
16357223-A-C 14245343-A-C **
16364057-ACTATATATATAT-A 14252177-ACTATATATATAT-A **
16424843-G-T 14312963-G-T **
15980124-C-A 13868244-C-A **
15860040-C-A 13748160-C-A **
15173599-T-C 13061685-T-C **
15618439-C-A 13506559-C-A **
15201521-A-T 13089607-A-T **
15264814-A-G 13152903-A-G **
15358709-G-A 13246828-G-A **
15368854-C-A 13256974-C-A **
15394946-C-A 13283066-C-A **
15423453-C-A 13311573-C-A **
15423454-G-A 13311574-G-A **
15542640-C-A 13430760-C-A **
14011658-G-T 11890952-G-T **
15616570-T-C 13504690-T-C **
15619345-C-A 13507465-C-A **
15844676-C-A 13732796-C-A **
15655249-T-G 13543369-T-G **
15657034-A-C 13545154-A-C **
15665582-T-A 13553702-T-A **
15665669-C-A 13553789-C-A **
15670176-T-C 13558296-T-C **
15682349-C-A 13570469-C-A **
15698440-T-A 13586560-T-A **
15698541-C-A 13586661-C-A **
15743647-A-T 13631767-A-T **
15761479-C-A 13649599-C-A Y41153 **
15773446-A-G 13661566-A-G **
14022022-C-A 11901316-C-A **
13885881-T-G 11765175-T-G **
14011321-T-A 11890615-T-A **
10977895-C-A **
10950482-C-G **
10959285-ATTC-A **
10959289-CATTCCAT-C **
10959962-G-T **
10963511-C-G **
10963752-A-T **
10967721-T-A **
10974051-T-C **
10977064-A-C **
10977700-A-C **
10977960-C-A **
10944855-C-A **
10978153-C-T **
10980987-G-T **
10983196-C-A **
10983653-C-A **
10984032-A-C **
10984034-A-C **
10984045-G-T **
10985332-T-G **
10988101-C-A **
10994816-C-A **
10948563-A-C **
10944784-C-T **
11009672-G-T **
10938317-C-A **
10900345-C-T **
10912389-G-A **
10921378-A-T **
10921710-C-G **
10921948-CT-C **
10923913-C-A **
10925274-T-C **
10928964-A-G **
10928992-C-A **
10936837-A-C **
10938323-A-T **
10944783-A-C **
10938359-T-G **
10938368-A-C **
10938375-T-C **
10939057-A-T **
10939060-C-A **
10939399-A-C **
10940250-A-C **
10940260-A-C **
10942114-C-A **
10943915-C-A **
10943949-G-C **
11005109-C-A **
11013356-C-A **
14011309-A-G 11890603-A-G **
11659862-G-A **
13505081-C-A 11349405-C-A **
13626027-C-A 11470351-C-A **
13626034-T-G 11470358-T-G **
13643409-C-A 11487733-C-A **
11648238-A-C **
11651189-C-A **
11651983-T-A **
11654618-C-A **
11658436-T-G **
11658473-T-G **
11665399-C-A **
13306849-C-A 11151173-C-A **
11668008-G-A **
11676415-T-A **
13885435-C-A 11764729-C-A **
16463576-C-A 14351696-C-A **
13932817-G-T 11812111-G-T **
13960955-T-G 11840249-T-G **
13961528-C-A 11840822-C-A **
13962018-T-C 11841312-T-C **
13977169-G-T 11856463-G-T **
14007313-T-G 11886607-T-G **
14008871-C-A 11888165-C-A **
13468035-C-A 11312359-C-A **
13273149-T-G 11117473-T-G **
11019661-A-C **
11030826-C-CTTCTG **
11020584-A-C **
11022314-G-C **
11022326-G-T **
11026133-A-C **
11026833-T-A **
11028055-C-A **
11030788-A-C **
11030796-C-G **
11030801-C-A **
11030823-A-C **
11030878-C-T **
13254029-A-C 11098353-A-C **
13197924-G-T 11042248-G-T **
13213962-A-G 11058286-A-G **
13213969-G-A 11058293-G-A **
13223393-A-C 11067717-A-C **
13223398-A-G 11067722-A-G **
13223404-G-GAGCA 11067728-G-GAGCA **
13227988-C-A 11072312-C-A **
13228065-C-G 11072389-C-G **
13233302-T-G 11077626-T-G **
13245996-C-A 11090320-C-A **
13251987-G-A 11096311-G-A **
16462652-G-T 14350772-G-T **
16703938-T-G 14592058-T-G **
16490019-A-C 14378139-A-C **
23197359-C-T 21035473-C-T **
22649478-C-A 20487592-C-A **
22723299-C-A 20561413-C-A **
22773776-A-C 20611890-A-C **
22775071-A-G 20613185-A-G **
22814947-C-A 20653061-C-A **
22886014-A-T 20724128-A-T **
23006696-C-G 20844810-C-G **
23007249-C-G 20845363-C-G **
23096334-A-T 20934448-A-T **
23104387-T-A 20942501-T-A **
23200395-G-T 21038509-G-T **
22587951-T-A 20426065-T-A **
23200905-T-G 21039019-T-G **
23200915-T-A 21039029-T-A **
23327322-A-T 21165436-A-T **
23439814-C-T 21277928-C-T **
23439824-C-CAAG 21277938-C-CAAG **
23439833-G-T 21277947-G-T **
23439834-T-C 21277948-T-C **
23464861-G-T 21302975-G-T **
23464920-T-A 21303034-T-A **
23609125-A-T 21447239-A-T **
22644847-C-A 20482961-C-A **
22587928-C-A 20426042-C-A **
23787982-G-T 21626096-G-T **
21737774-C-A 19575888-C-A M8152 **
21444545-T-C 19282659-T-C **
21448476-T-C 19286590-T-C **
21492960-C-A 19331074-C-A **
21498929-A-C 19337043-A-C **
21544845-G-T 19382959-G-T **
21555278-C-A 19393392-C-A **
21555352-C-A 19393466-C-A **
21556937-T-TA 19395051-T-TA **
21588134-G-T 19426248-G-T **
21596958-G-C 19435072-G-C **
21786879-T-A 19624993-T-A **
22537590-C-T 20375704-C-T **
21885759-C-A 19723873-C-A **
21915161-C-T 19753275-C-T **
22008521-T-G 19846635-T-G **
22011586-A-G 19849700-A-G **
22029965-C-A 19868079-C-A **
22085132-G-T 19923246-G-T **
22091258-C-A 19929372-C-A **
22173569-G-T 20011683-G-T **
22207204-A-T 20045318-A-T **
22237647-A-T 20075761-A-T DYZ19 **
22487811-T-A 20325925-T-A DYZ19 **
23723602-C-T 21561716-C-T **
23807438-G-C 21645552-G-C **
21340267-C-A 19178381-C-A **
28719106-C-A 26572959-C-A **
28542248-T-G 26396101-T-G **
28545396-C-A 26399249-C-A **
28589551-G-A 26443404-G-A **
28597179-A-T 26451032-A-T **
28607849-C-A 26461702-C-A **
28622000-A-G 26475853-A-G **
28624664-C-A 26478517-C-A **
28634958-A-G 26488811-A-G **
28703485-C-A 26557338-C-A **
28716423-T-G 26570276-T-G **
28720171-C-T 26574024-C-T **
28530794-A-C 26384647-A-C **
28758206-T-G 26612059-T-G **
28771944-G-T 26625797-G-T **
28776799-C-A 26630652-C-A **
56678074-C-T **
56734776-G-T **
56838645-G-T **
56841772-G-T **
56842194-G-T **
56842207-G-T **
56882999-G-T **
28532646-A-G 26386499-A-G **
28521218-C-T 26375071-C-T **
23825080-T-TG 21663194-T-TG **
24879647-AG-A 22733500-AG-A g1 **
23953052-G-T 21806905-G-T **
24235417-G-TTTT 22089270-G-TTTT P3_b1 **
24267109-T-C 22120962-T-C P3_b1 **
24381385-C-A 22235238-C-A **
24386958-CTCTA-C 22240811-CTCTA-C **
24404245-A-C 22258098-A-C **
24404376-C-A 22258229-C-A **
24406525-G-T 22260378-G-T **
24407752-A-C 22261605-A-C **
24869953-T-G 22723806-T-G P3_b2 **
26133272-A-T 23987125-A-T P1_Y1 **
28516419-C-A 26370272-C-A **
26138693-A-G 23992546-A-G P1_Y1 **
26740662-T-G 24594515-T-G P1_g2 **
27127731-C-T 24981584-C-T P1_g3 **
27467334-G-T 25321187-G-T P1_Y2 **
27484264-CTTT-C 25338117-CTTT-C P1_Y2 **
27484268-CT-C 25338121-CT-C P1_Y2 **
28460965-G-T 26314818-G-T **
28463762-C-A 26317615-C-A **
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17775009-C-A 15663129-C-A **
17883945-C-A 15772065-C-A **
17993905-T-TC 15882025-T-TC P7_Prx **
18008680-T-TGG 15896800-T-TGG P7_Dst **
18058243-C-A 15946363-C-A **
17466920-A-G 15355040-A-G **
18071733-C-A 15959853-C-A **
18128058-A-C 16016178-A-C **
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18188162-C-A 16076282-C-A **
18189078-C-A 16077198-C-A **
18231463-T-C 16119583-T-C **
18511569-T-C 16399689-T-C P6_Dst **
18558220-C-A 16446340-C-A **
18569714-T-C 16457834-T-C **
18630658-A-C 16518778-A-C **
17480004-G-A 15368124-G-A **
17455841-C-A 15343961-C-A **
18710244-C-A 16598364-C-A **
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16612653-AG-A 14500773-AG-A **
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16702849-G-A 14590969-G-A **
16702850-A-T 14590970-A-T **
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10899075-CA-C **
16719932-C-A 14608052-C-A **
16968261-T-C 14856381-T-C **
17455825-T-G 15343945-T-G **
17006535-T-G 14894655-T-G **
17006540-A-T 14894660-A-T **
17020674-C-A 14908794-C-A **
17038313-T-C 14926433-T-C **
17088494-G-T 14976614-G-T **
17095303-C-A 14983423-C-A **
17135679-T-C 15023799-T-C **
17159010-T-C 15047130-T-C **
17211542-C-A 15099662-C-A **
17381359-T-C 15269479-T-C **
17440397-G-C 15328517-G-C **
18682534-C-A 16570654-C-A **
18714195-C-A 16602315-C-A **
21245024-A-G 19083138-A-G **
20420948-G-T 18259062-G-T P5_Dst **
19644808-G-T 17532928-G-T P5_Prx **
19678788-C-A 17566908-C-A P5_Prx **
19732352-A-G 17620472-A-G P5_Prx **
19752463-A-T 17640583-A-T P5_Prx **
19936161-G-T 17824281-G-T P5_Prx **
20221483-A-AG 18059597-A-AG P5_Dst **
20242525-G-T 18080639-G-T P5_Dst **
20352420-C-A 18190534-C-A P5_Dst **
20420926-T-G 18259040-T-G P5_Dst **
20420943-C-A 18259057-C-A P5_Dst **
20632060-C-A 18470174-C-A P4_Prx **
19562577-C-A 17450697-C-A **
20684898-A-G 18523012-A-G P4_Prx **
20685226-G-A 18523340-G-A P4_Prx **
20757285-T-A 18595399-T-A P4_Prx **
20809619-T-C 18647733-T-C P4_Gap **
21069827-G-A 18907941-G-A **
21073117-C-A 18911231-C-A **
21091051-T-G 18929165-T-G **
21091052-C-A 18929166-C-A **
21138634-T-A 18976748-T-A **
21182387-G-A 19020501-G-A **
21238777-C-A 19076891-C-A **
19575828-A-T 17463948-A-T P5_Prx **
19529167-G-A 17417287-G-A **
18726733-T-A 16614853-T-A **
19060595-C-A 16948715-C-A **
18730771-A-T 16618891-A-T **
18869294-C-A 16757414-C-A **
18932708-G-T 16820828-G-T **
18932751-G-T 16820871-G-T **
18932762-G-T 16820882-G-T **
18932774-G-T 16820894-G-T **
18969170-G-T 16857290-G-T **
19036761-G-A 16924881-G-A **
19043057-G-T 16931177-G-T **
19044630-C-A 16932750-C-A **
19073123-G-A 16961243-G-A **
19499113-G-T 17387233-G-T **
19200901-G-A 17089021-G-A Y130770 **
19216426-C-A 17104546-C-A **
19246065-C-A 17134185-C-A **
19251668-C-A 17139788-C-A **
19253019-C-A 17141139-C-A **
19272119-G-T 17160239-G-T **
19286226-C-A 17174346-C-A **
19300988-G-T 17189108-G-T **
19410014-C-A 17298134-C-A **
19462071-A-G 17350191-A-G **
19479765-A-G 17367885-A-G **
10899078-C-CT **
10930050-A-T **
10899064-C-T **
4002247-A-G 4134206-A-G **
3829185-T-A 3961144-T-A **
3833526-A-G 3965485-A-G **
3844653-T-C 3976612-T-C **
3848604-G-A 3980563-G-A **
3849091-C-A 3981050-C-A **
3849126-G-A 3981085-G-A **
3849145-C-T 3981104-C-T **
3852450-G-C 3984409-G-C **
3955587-A-C 4087546-A-C **
3986856-G-T 4118815-G-T **
4021980-A-G 4153939-A-G **
3663012-C-A 3794971-C-A **
4021986-C-A 4153945-C-A **
4063579-C-A 4195538-C-A **
4068544-C-A 4200503-C-A 8×A**
4068544-C-CA 4200503-C-CA 8×A**
4138443-CAGTTCTG-C 4270402-CAGTTCTG-C **
4256984-T-G 4388943-T-G **
4258598-T-C 4390557-T-C **
4304636-C-G 4436595-C-G **
4366977-C-A 4498936-C-A **
4371006-C-G 4502965-C-G **
3787473-A-C 3919432-A-C **
3640574-T-A 3772533-T-A **
4381146-C-T 4513105-C-T **
3295190-T-G 3427149-T-G **
2897294-G-T 3029253-G-T **
2901486-C-A 3033445-C-A **
2909101-A-T 3041060-A-T **
3011432-C-T 3143391-C-T **
3093285-T-G 3225244-T-G **
3110340-C-A 3242299-C-A **
3164158-G-T 3296117-G-T **
3218604-G-T 3350563-G-T **
3248155-G-T 3380114-G-T **
3276060-T-G 3408019-T-G **
3305275-G-T 3437234-G-T **
3602837-C-A 3734796-C-A **
3329078-T-C 3461037-T-C **
3342918-A-T 3474877-A-T **
3374251-T-C 3506210-T-C **
3407451-G-A 3539410-G-A **
3432754-G-T 3564713-G-T **
3448806-C-A 3580765-C-A **
3492831-A-C 3624790-A-C **
3535824-T-C 3667783-T-C **
3546071-G-T 3678030-G-T **
3563094-TA-T 3695053-TA-T 8×A**
4381136-A-T 4513095-A-T **
4381148-A-T 4513107-A-T **
2845270-T-G 2977229-T-G **
5562646-TTATTATAAATTATTGAAAATAAGG-T 5694605-TTATTATAAATTATTGAAAATAAGG-T **
5226456-G-T 5358415-G-T **
10899056-A-G **
5249102-T-A 5381061-T-A **
5250865-C-A 5382824-C-A **
5264556-A-C 5396515-A-C **
5264613-G-T 5396572-G-T **
5341655-A-T 5473614-A-T **
5393389-A-G 5525348-A-G **
5393527-C-T 5525486-C-T **
5543366-C-A 5675325-C-A **
5586119-C-A 5718078-C-A **
5185203-T-A 5317162-T-A **
5612774-G-A 5744733-G-A **
5660301-C-A 5792260-C-A **
5686107-G-T 5818066-G-T **
5698560-A-T 5830519-A-T **
5728097-G-C 5860056-G-C **
5756057-T-G 5888016-T-G **
5756149-T-C 5888108-T-C **
5817413-T-A 5949372-T-A **
5844600-C-A 5976559-C-A **
5869553-C-A 6001512-C-A **
5198518-G-T 5330477-G-T **
5159604-T-C 5291563-T-C **
4388582-A-C 4520541-A-C **
4872595-C-A 5004554-C-A **
4397875-C-A 4529834-C-A **
4438960-T-A 4570919-T-A **
4470429-T-C 4602388-T-C **
4554705-C-A 4686664-C-A **
4565721-C-T 4697680-C-T **
4578012-T-G 4709971-T-G **
4580602-C-A 4712561-C-A **
4781056-A-T 4913015-A-T **
4792418-G-T 4924377-G-T **
4809907-G-T 4941866-G-T **
4889822-T-G 5021781-T-G **
5148603-G-T 5280562-G-T **
4898485-T-C 5030444-T-C **
4908190-A-C 5040149-A-C **
4908204-G-A 5040163-G-A **
4936583-C-T 5068542-C-T FGC25102 18×TG**
4957644-C-A 5089603-C-A **
4959386-T-C 5091345-T-C **
4995880-C-A 5127839-C-A **
5011749-C-T 5143708-C-T **
5132460-T-G 5264419-T-G **
5132487-G-T 5264446-G-T **
2892582-A-C 3024541-A-C **
2843983-T-G 2975942-T-G **
5957447-G-T 6089406-G-T **
10872178-C-A **
6179615-GA-G 6311574-GA-G IR3_Dst **
22229556-G-T 20067670-G-T DYZ19 **
10683190-C-A **
19311016-C-A 17199136-C-A **
14281110-C-A 12160404-C-A **
14451260-C-T 12330533-C-T **
10868278-A-C **
10944781-T-C **
14608123-C-A 12496325-C-A **
22587935-C-A 20426049-C-A **
14300786-C-A 12180080-C-A **
20655165-A-T 18493279-A-T P4_Prx **
7043613-C-A 7175572-C-A **
22902108-C-CAA 20740222-C-CAA 17×A**
10899072-T-A **
10800930-C-A **
10660741-T-TTTCCA **
7418368-C-A 7550327-C-A **
10836615-T-A **
15595079-C-A 13483199-C-A **
14279810-C-A 12159104-C-A **
10924366-C-CCATAG **
14557519-G-T 12445720-G-T **
21443439-T-C 19281553-T-C **
10772951-T-G **
28514702-C-A 26368555-C-A **
21346428-C-A 19184542-C-A **
3363165-TTTA-T 3495124-TTTA-T 5×TTA**
9957006-T-C 10119397-T-C **
14627328-C-A 12515396-C-A Z25417 **
16079228-A-G 13967348-A-G **
17515376-A-G 15403496-A-G **
10015013-A-G 10177404-A-G **
7378815-C-T 7510774-C-T **
3994817-C-T 4126776-C-T **
28720946-G-C 26574799-G-C CTS12841 **
10946570-T-C **
21425372-G-T 19263486-G-T **
14331157-GC-T 12210451-GC-T **
2651899-TTTTG-T 2783858-TTTTG-T **
22251788-G-T 20089902-G-T DYZ19 **
11009347-C-A **
4292973-C-A 4424932-C-A **
7253626-C-A 7385585-C-A **
23393869-C-A 21231983-C-A **
28714926-C-A 26568779-C-A **
5189480-C-A 5321439-C-A **
13974677-A-C 11853971-A-C **
13584888-A-G 11429212-A-G **
10789893-C-T **
2788432-A-T 2920391-A-T **
28720173-C-T 26574026-C-T **
21295232-A-C 19133346-A-C **
20637680-A-G 18475794-A-G P4_Prx **
15450206-C-A 13338326-C-A **
13974690-C-T 11853984-C-T **
18547002-C-A 16435122-C-A **
15865549-CTTT-C 13753669-CTTT-C 22×T**
3061195-C-A 3193154-C-A **
6729599-C-A 6861558-C-A **
14588991-G-T 12477191-G-T **
17597725-C-A 15485845-C-A **
4201147-C-A 4333106-C-A **
15173496-TAAA-T 13061582-TAAA-T 11×A**
2649790-G-A 2781749-G-A **
2649790-G-GA 2781749-G-GA **
2649793-AC-A 2781752-AC-A **
2669621-A-T 2801580-A-T **
2700067-T-C 2832026-T-C **
2702006-C-A 2833965-C-A **
2784281-C-A 2916240-C-A **
2784348-A-G 2916307-A-G **
2785994-A-G 2917953-A-G **
2788431-G-T 2920390-G-T **
13252585-C-T 11096909-C-T **
14614647-C-A 12502845-C-A **
13287367-C-A 11131691-C-A **
28484460-C-A 26338313-C-A **
21961518-C-A 19799632-C-A **
20685216-T-A 18523330-T-A P4_Prx **
10946591-C-CTCTT **
6664430-G-T 6796389-G-T **
2783664-T-A 2915623-T-A **
11027150-G-T **
17707372-G-C 15595492-G-C **
2786002-A-G 2917961-A-G **
15952757-C-A 13840877-C-A **
17560701-C-A 15448821-C-A **
10800942-A-C **
10845701-C-T **
10938354-T-C **
11030831-G-A **
11030857-T-C **
14550731-C-A 12438932-C-A **
27561672-T-A 25415525-T-A P1_Y2 **
10876680-G-T **
8817136-C-A 8949095-C-A **
14077928-G-A 11957222-G-A **
24409297-G-T 22263150-G-T **
10845700-C-A **
7281037-C-A 7412996-C-A **
5870048-C-G 6002007-C-G **
5246865-C-A 5378824-C-A **
5976437-T-A 6108396-T-A **
10671746-G-T **
9930567-G-T 10092958-G-T **
9980337-C-A 10142728-C-A **
9980378-C-A 10142769-C-A **
10015017-A-C 10177408-A-C **
10024451-C-A 10186842-C-A **
10028504-C-A 10190895-C-A **
10648193-A-T **
10654257-A-C **
10666731-C-A **
10672842-A-C **
9928264-G-A 10090655-G-A **
10672857-A-C **
10684653-G-T **
10749096-C-A **
10760285-C-A **
10764867-C-A **
10767922-A-C **
10772945-C-T **
10774700-CTTCCA-C **
10775833-A-C **
10779134-T-C **
9930415-G-T 10092806-G-T **
9830499-C-A 9992890-C-A **
10783938-G-T **
8865829-CTG-C 8997788-CTG-C **
8171823-C-A 8303782-C-A **
8281726-C-A 8413685-C-A **
8295359-TA-T 8427318-TA-T **
8296800-C-G 8428759-C-G **
8689346-C-A 8821305-C-A **
8719325-C-A 8851284-C-A **
8738814-C-A 8870773-C-A **
8746358-G-A 8878317-G-A **
8750731-A-G 8882690-A-G **
8807013-T-G 8938972-T-G **
9123138-G-T **
9777521-A-C 9939912-A-C **
8995776-T-A 9158167-T-A **
5999411-C-A 6131370-C-A **
9055485-G-T 9217876-G-T **
9116969-C-A 9279360-C-A **
9116976-G-A 9279367-G-A **
9162909-C-A 9325300-C-A **
9416923-C-A 9579314-C-A **
9429606-C-A 9591997-C-A **
9451236-C-A 9613627-C-A **
9606670-T-C 9769061-T-C IR3_Prx **
10782526-C-A **
10789891-T-G **
8064163-T-A 8196122-T-A **
10865383-T-A **
10844073-C-A **
10846218-T-C **
10847103-C-A **
10848213-A-G **
10857809-A-C **
10860273-T-A **
10862614-C-A **
10865372-T-C **
10865382-T-A **
10868415-A-C **
10840851-C-A **
10869667-T-C **
10873331-T-C **
10878616-T-C **
10879413-C-A **
10879916-T-C **
10879918-G-T **
10881480-C-A **
10892572-CCA-C **
10893536-T-C **
10895638-C-A **
10843724-T-C **
10838554-C-A **
10789901-C-G **
10805859-T-C **
10789911-C-G **
10789917-C-T **
10791273-T-C **
10791283-T-G **
10791285-C-G **
10795399-T-C **
10795580-A-C **
10795902-A-ATTTC **
10795942-A-G **
10802020-G-C **
10805862-C-T **
10836871-T-C **
10805872-C-T **
10810755-C-A **
10814736-C-A **
10817964-C-A **
10818006-T-C **
10823471-G-C **
10825290-C-CATGTTA **
10831247-A-G **
10834044-C-A **
10835377-A-C **
8064226-G-A 8196185-G-A **
19871-G-T **
8046379-C-A 8178338-C-A **
6619585-C-A 6751544-C-A **
7166861-C-A 7298820-C-A **
7170017-G-A 7301976-G-A **
7170662-G-A 7302621-G-A **
6672324-C-A 6804283-C-A **
6652500-T-C 6784459-T-C **
6646754-C-A 6778713-C-A **
7179804-C-A 7311763-C-A **
7179857-T-C 7311816-T-C **
7179858-C-A 7311817-C-A **
7166595-C-T 7298554-C-T **
7179941-A-T 7311900-A-T **
7180154-C-A 7312113-C-A **
7185246-A-G 7317205-A-G **
7197561-A-G 7329520-A-G **
6509941-T-A 6641900-T-A **
7206842-C-A 7338801-C-A **
6495021-T-C 6626980-T-C **
6976346-C-A 7108305-C-A **
7255534-T-C 7387493-T-C **
7166596-C-T 7298555-C-T **
6712753-T-C 6844712-T-C **
6395066-A-C 6527025-A-C **
7044377-C-T 7176336-C-T **
6979787-C-A 7111746-C-A **
6920675-C-A 7052634-C-A **
6992584-G-T 7124543-G-T **
6858705-T-C 6990664-T-C **
7018053-G-C 7150012-G-C **
7030572-C-A 7162531-C-A **
7030768-T-G 7162727-T-G **
7040016-G-T 7171975-G-T **
7045696-A-T 7177655-A-T **
7160462-C-A 7292421-C-A **
7097485-G-T 7229444-G-T **
7106456-A-G 7238415-A-G **
6858703-C-G 6990662-C-G **
6858696-C-T 6990655-C-T **
6830053-C-A 6962012-C-A **
6767911-C-A 6899870-C-A **
7107768-A-G 7239727-A-G **
6757284-A-G 6889243-A-G **
7142550-C-A 7274509-C-A **
6445204-G-T 6577163-G-T **
7254991-T-C 7386950-T-C **
6977108-C-A 7109067-C-A **
6144672-T-C 6276631-T-C IR3_Dst **
7572808-C-A 7704767-C-A **
6177409-ATT-A 6309368-ATT-A IR3_Dst 11×T**
7649175-CTT-C 7781134-CTT-C 10×T**
7655210-TA-T 7787169-TA-T 8×A**
6147606-G-T 6279565-G-T IR3_Dst **
7664267-A-G 7796226-A-G **
6139741-G-T 6271700-G-T IR3_Dst **
7469871-C-A 7601830-C-A IR1_L **
6106036-G-A 6237995-G-A **
7780735-C-A 7912694-C-A **
6092121-C-A 6224080-C-A **
7939372-C-T 8071331-C-T **
7990573-TA-T 8122532-TA-T **
7990671-G-C 8122630-G-C **
7541535-A-G 7673494-A-G **
6267695-C-CTAA 6399654-C-CTAA IR3_Dst **
7461136-G-T 7593095-G-T IR1_L **
7336359-A-C 7468318-A-C **
7257473-T-A 7389432-T-A **
6363117-TTAACA-T 6495076-TTAACA-T **
7258529-G-C 7390488-G-C **
7269435-T-C 7401394-T-C **
7333990-A-G 7465949-A-G **
7282853-C-A 7414812-C-A **
7340938-G-C 7472897-G-C **
58978206-ACTCCACCCCA-A,ACTCCACCCCT 56832059-ACTCCACCCCA-A,ACTCCACCCCT ***
22247728-A-C 20085842-A-C DYZ19 ***
6650116-C-A 6782075-C-A ***
10872461-C-A ***
16288202-G-T 14176322-G-T ***
10821894-CTCC-TTCA ***
56848556-C-A ***
5937240-CTCTA-C,CTATA 6069199-CTCTA-C,CTATA ***
10893996-C-T ***
15107127-A-AT 12995214-A-AT 8×T***
15726397-C-A 13614517-C-A ***
2707575-GA-G 2839534-GA-G Y1948 10×A***
25156686-C-T 23010539-C-T g1 ***
25007823-G-A 22861676-G-A g1 ***
17564928-AG-A 15453048-AG-A ***
10878236-G-T ***
6856487-C-A 6988446-C-A ***
16666040-C-A 14554160-C-A ***
10754779-CTAT-C,CCATTCCTC ***
22429697-G-C 20267811-G-C DYZ19 ***
6306365-C-T 6438324-C-T IR3_Dst ***
22456774-G-C 20294888-G-C DYZ19 ***
28774246-T-C 26628099-T-C ***
15620101-C-T 13508221-C-T ***
9371478-A-G 9533869-A-G ***
16528875-C-A 14416995-C-A ***
22455713-A-T 20293827-A-T DYZ19 ***
28006790-C-T 25860643-C-T P1_Y2 ***
16282390-C-A 14170510-C-A ***
10871042-C-T ***
17405808-C-G 15293928-C-G ***
23393304-C-CA 21231418-C-CA 9×A***
13908011-C-A 11787305-C-A ***
9989932-G-T 10152323-G-T ***
21235261-T-G 19073375-T-G ***
21224798-TG-G,TTT 19062912-TG-G,TTT ***
18585848-AG-A 16473968-AG-A ***
18614182-A-T 16502302-A-T ***
9041686-C-A 9204077-C-A ***
11672558-C-A ***
11673462-G-A ***
2805529-C-CAA 2937488-C-CAA 22×A***
13855322-G-T 11734616-G-T ***
14366670-C-A 12245965-C-A ***
8842968-AC-A 8974927-AC-A ***
13618193-C-T 11462517-C-T ***
7603284-G-T 7735243-G-T ***
14270408-C-A 12149702-C-A ***
14232598-T-A 12111892-T-A ***
19520625-C-T 17408745-C-T ***
3229441-A-T 3361400-A-T ***
8635934-G-T 8767893-G-T ***
19448122-C-A 17336242-C-A ***
14181456-AG-A 12060750-AG-A ***
19395391-C-A 17283511-C-A ***
7867879-GGAAA-G,GGAAAGAAAGAAA 7999838-GGAAA-G,GGAAAGAAAGAAA 16×GAAA***
8216048-C-A 8348007-C-A ***
18197991-C-A 16086111-C-A ***
21402233-G-T 19240347-G-T ***
16878317-C-A 14766437-C-A ***
8816379-C-A 8948338-C-A ***
10805607-A-G ***
6979843-CA-C,CAA 7111802-CA-C,CAA 11×A***
17159177-C-T 15047297-C-T ***
16370637-C-A 14258757-C-A ***
15094041-C-A 12982129-C-A ***
22973117-C-A 20811231-C-A ***
11019188-C-A ***
17315566-TAA-T 15203686-TAA-T ***
22812656-TTAC-T 20650770-TTAC-T ***
19250733-C-T 17138853-C-T Y104159 ***
4770439-T-A 4902398-T-A ***
4567293-C-A 4699252-C-A ***
13488960-C-CT 11333284-C-CT ***
10693410-C-A ***
10686242-C-A ***
4388837-G-T 4520796-G-T BY5326 ***
22028737-T-C 19866851-T-C ***
22026206-C-A 19864320-C-A ***
17867588-AG-A 15755708-AG-A ***
17867594-G-GA 15755714-G-GA ***
14940059-C-A 12828133-C-A ***
21555216-A-G 19393330-A-G ***
21550035-T-A 19388149-T-A ***
13322082-C-A 11166406-C-A ***
7255580-C-A 7387539-C-A ***
9036256-AT-A 9198647-AT-A 8×T***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

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