Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > L1335/S530 > L1065 > Z16325 > S744 > S691 > S695 > FGC19633 > FGC32575 > A6091 > A6090

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFGC
QETMC
5603950-AT-A 5735909-AT-A *
58848148-C-A 56742723-G-T **
21895557-C-T 19733671-C-T **
21089000-G-T 18927114-G-T **
58836846-C-G 56754025-G-C **
58893665-C-G 56697206-G-C **
19418442-G-A 17306562-G-A **
18767231-C-A 16655351-C-A **
59014416-G-A 56868269-G-A **
21824255-CA-C 19662369-CA-C 30×A***
59014761-T-G 56868614-T-G **
6024629-T-C 6156588-T-C **
13660420-G-T 11504744-G-T **
59012208-A-T 56866061-A-T **
17787715-A-G 15675835-A-G **
22479071-G-T 20317185-G-T DYZ19 **
59013031-C-CT 56866884-C-CT **
4340232-A-G 4472191-A-G **
8671307-C-A 8803266-C-A **
22230777-T-A 20068891-T-A DYZ19 **
14379262-C-A 12258558-C-A **
7373485-C-T 7505444-C-T **
22085907-G-A 19924021-G-A **
17270515-C-A 15158635-C-A **
23096238-A-G 20934352-A-G **
22085503-T-A 19923617-T-A **
4366666-C-T 4498625-C-T **
17270078-G-A 15158198-G-A **
21942271-G-A 19780385-G-A ***
22217563-C-T 20055677-C-T DYZ19 ***
20568635-G-A 18406749-G-A P5_Dst ***
20872060-C-T 18710174-C-T P4_Dst ***
21033139-A-G 18871253-A-G ***
21796598-G-A 19634712-G-A ***
21182494-C-A 19020608-C-A ***
21182499-C-G 19020613-C-G ***
21388772-T-C 19226886-T-C ***
22167959-T-G 20006073-T-G ***
20129169-A-G 18017289-A-G P5_Dst ***
21182509-T-C 19020623-T-C ***
21388782-C-G 19226896-C-G ***
21337478-G-T 19175592-G-T ***
21969331-G-A 19807445-G-A ***
21388778-C-T 19226892-C-T ***
20377113-C-G 18215227-C-G P5_Dst ***
22242215-A-C 20080329-A-C DYZ19 ***
20114390-G-C 18002510-G-C P5_Dst ***
17323437-C-T 15211557-C-T ***
15700449-A-G 13588569-A-G ***
15762152-A-T 13650272-A-T ***
15835460-C-T 13723580-C-T ***
15922186-A-G 13810306-A-G ***
15930858-T-C 13818978-T-C ***
16000183-G-A 13888303-G-A ***
16045312-C-T 13933432-C-T ***
16689649-C-A 14577769-C-A ***
16942983-C-A 14831103-C-A ***
17192649-C-A 15080769-C-A ***
17245889-T-C 15134009-T-C ***
17323401-C-G 15211521-C-G ***
17450821-G-A 15338941-G-A ***
20084339-C-T 17972459-C-T P5_Dst ***
17798185-A-G 15686305-A-G ***
17830860-T-G 15718980-T-G ***
18098870-A-G 15986990-A-G ***
18159194-G-A 16047314-G-A ***
18565959-C-G 16454079-C-G ***
18717633-G-A 16605753-G-A ***
18758982-C-G 16647102-C-G ***
19271213-A-G 17159333-A-G ***
22361925-G-T 20200039-G-T DYZ19 ***
19583069-A-C 17471189-A-C P5_Prx ***
19583118-T-A 17471238-T-A P5_Prx ***
19643247-G-A 17531367-G-A P5_Prx ***
19759161-C-A 17647281-C-A P5_Prx ***
22361878-C-G 20199992-C-G DYZ19 ***
22529886-G-A 20368000-G-A ***
22361984-G-A 20200098-G-A DYZ19 ***
13489062-GCCCTCCA-ACCCAACC 11333386-GCCCTCCA-ACCCAACC ***
59013651-A-T 56867504-A-T ***
59022606-C-A 56876459-C-A ***
22164547-C-CA 20002661-C-CA 19×A***
13693543-GGT-AGA 11537867-GGT-AGA ***
6863818-CTTTTT-C 6995777-CTTTTT-C 21×T***
8085438-CAA-C 8217397-CAA-C 15×A***
13195842-AT-TC 11040166-AT-TC ***
13213844-TGGATGGAT-GGGAG 11058168-TGGATGGAT-GGGAG ***
13452899-C-CACGCT 11297223-C-CACGCT ***
13453145-AT-GA 11297469-AT-GA ***
13465310-TG-CA 11309634-TG-CA ***
13466302-TT-GA 11310626-TT-GA ***
13689753-GTG-ATC 11534077-GTG-ATC ***
58978533-A-T 56832386-A-T ***
13811163-GG-AA 11690457-GG-AA ***
14286928-C-CTT 12166222-C-CTT 16×T***
14612277-A-ATAGG 12500483-A-ATAGG ***
15358761-GAA-G 13246880-GAAA-G 26×A***
16345150-T-TTCCTCC 14233270-T-TTCCTCC ***
18401199-C-CAAA 16289319-C-CAAA P6_Gap 30×A***
20104244-A-AGGGGG 17992364-A-AGGGGG P5_Dst 13×G***
21189668-CAAAAAAAAAAAA-C 19027782-CAAAAAAAAAAAA-C 23×A***
21887744-TA-T 19725858-TA-T 11×A***
22479418-CTAG-TTAC 20317532-CTAG-TTAC DYZ19 ***
22812629-CTTTTTTT-C 20650743-CTTTTTTT-C 28×T***
23415304-GTA-G 21253418-GTA-G ***
23747205-CTTTTT-C 21585319-CTTTTT-C 29×T***
59013650-G-T 56867503-G-T ***
58834028-C-T 56756843-G-A ***
22361993-G-T 20200107-G-T DYZ19 ***
25471946-T-G 23325799-T-G P2_r2 ***
22366244-G-A 20204358-G-A DYZ19 ***
22366274-G-A 20204388-G-A DYZ19 ***
22439050-A-G 20277164-A-G DYZ19 ***
22479345-T-A 20317459-T-A DYZ19 ***
22517244-G-A 20355358-G-A ***
15215507-T-G 13103593-T-G ***
22713138-G-A 20551252-G-A ***
23141989-A-C 20980103-A-C ***
24115209-C-A 21969062-C-A P3_b1 ***
24205614-T-C 22059467-T-C P3_b1 ***
24660403-T-G 22514256-T-G P3_b2 ***
24668345-T-C 22522198-T-C P3_b2 ***
24912148-G-A 22766001-G-A g1 ***
25505164-G-T 23359017-G-T P1_gr1 ***
28784324-T-A 26638177-T-A ***
26110495-C-A 23964348-C-A P1_Y1 ***
26400974-T-A 24254827-T-A P1_Y1 ***
27055467-T-A 24909320-T-A P1_r4 ***
27423319-G-T 25277172-G-T P1_g3 ***
27584356-A-C 25438209-A-C P1_Y2 ***
27686349-C-A 25540202-C-A P1_Y2 ***
27686389-G-A 25540242-G-A P1_Y2 ***
27792018-A-T 25645871-A-T P1_Y2 ***
28136106-T-C 25989959-T-C P1_b4 ***
28385934-C-G 26239787-C-G P1_gr2 ***
28477992-C-A 26331845-C-A 17×A***
28556349-A-G 26410202-A-G ***
28556352-T-G 26410205-T-G ***
15533428-C-A 13421548-C-A ***
14255885-C-T 12135179-C-T ***
14764997-A-C 12653066-A-C ***
22511012-G-T 20349126-G-T DYZ19 ***
13708463-A-G 11552787-A-G ***
16786213-CTTTTTTT-C 14674333-CTTTTTTT-C 22×T***
22319010-C-T 20157124-C-T DYZ19 ***
13450367-CCCATTT-GCCTTTC 11294691-CCCATTT-GCCTTTC ***
22487804-T-G 20325918-T-G DYZ19 ***
22361787-C-G 20199901-C-G DYZ19 ***
17950825-AATATATATATAT-A 15838945-AATATATATATAT-A 27×AT***
13452357-C-T 11296681-C-T ***
13692164-GTGG-ATGT 11536488-GTGG-ATGT ***
22287462-TAG-CAA 20125576-TAG-CAA DYZ19 ***
28614844-CT-C 26468697-CT-C 13×T***
4794855-CT-C 4926814-CT-C 21×T***
58996432-TGTAA-CTTAT 56850285-TGTAA-CTTAT ***
58836957-G-C 56753914-C-G ***
22510257-T-C 20348371-T-C DYZ19 ***
9030408-AGAAAGGAAAGGAAAGGAAAG-A 9192799-AGAAAGGAAAGGAAAGGAAAG-A 17×GAAAG***
22366336-A-C 20204450-A-C DYZ19 ***
28478038-T-TAG 26331891-T-TAG 23×AG***
13452928-C-T 11297252-C-T ***
13811106-A-G 11690400-A-G ***
2672950-T-C 2804909-T-C ***
3459521-G-T 3591480-G-T ***
4143929-C-A 4275888-C-A ***
4366704-G-A 4498663-G-A ***
4376853-A-G 4508812-A-G ***
4494675-A-G 4626634-A-G ***
4772439-A-G 4904398-A-G ***
5007867-G-A 5139826-G-A ***
13480856-G-A 11325180-G-A ***
13842792-C-G 11722086-C-G ***
5572281-G-A 5704240-G-A ***
17323360-T-G 15211480-T-G ***
13468888-C-T 11313212-C-T ***
27997643-G-GA 25851496-G-GA P1_Y2 16×A***
16562782-TA-T 14450902-TA-T 18×A***
13489062-G-A 11333386-G-A ***
13488186-G-T 11332510-G-T ***
13488187-C-T 11332511-C-T ***
3878644-C-CAAA 4010603-C-CAAA 15×A***
2810322-A-T 2942281-A-T ***
4651422-GA-G 4783381-GA-G 11×A***
13465287-G-A 11309611-G-A ***
25207889-C-A 23061742-C-A P2_r1 ***
13449592-A-G 11293916-A-G ***
13811119-G-C 11690413-G-C ***
17662183-A-G 15550303-A-G ***
24910853-CAT-C 22764706-CAT-C g1 26×AT***
18123674-G-A 16011794-G-A Z34799 ***
58977317-G-A 56831170-G-A ***
59008520-A-T 56862373-A-T ***
59014343-A-C 56868196-A-C ***
59014382-A-C 56868235-A-C ***
59014490-C-T 56868343-C-T ***
59014536-A-G 56868389-A-G ***
59014659-G-A 56868512-G-A ***
59021170-G-A 56875023-G-A ***
59021222-C-T 56875075-C-T ***
13465299-CA-ACT 11309623-CA-ACT ***
24115164-CCA-C 21969017-CCA-C P3_b1 23×CA***
21388667-CT-C 19226781-CT-C 14×T***
5289134-A-G 5421093-A-G ***
5647844-A-G 5779803-A-G ***
14759667-A-G 12647736-A-G ***
13811097-T-C 11690391-T-C ***
13465300-A-T 11309624-A-T ***
13465311-G-A 11309635-G-A ***
13473917-C-A 11318241-C-A ***
13473931-C-T 11318255-C-T ***
13478290-C-T 11322614-C-T ***
13532839-G-A 11377163-G-A ***
13657101-G-A 11501425-G-A ***
13689753-G-A 11534077-G-A ***
13693508-G-T 11537832-G-T ***
13700733-T-A 11545057-T-A ***
13708507-A-T 11552831-A-T ***
13734162-G-A 11578486-G-A ***
13811094-G-A 11690388-G-A ***
13811131-A-G 11690425-A-G ***
13461265-C-T 11305589-C-T ***
13811164-G-A 11690458-G-A ***
13812053-C-T 11691347-C-T ***
13842658-G-T 11721952-G-T ***
13842668-G-C 11721962-G-C ***
13853762-C-A 11733056-C-A ***
13868601-G-T 11747895-G-T ***
13869111-A-G 11748405-A-G ***
14195902-A-C 12075196-A-C ***
14203503-T-G 12082797-T-G ***
13811163-G-A 11690457-G-A ***
14260746-C-A 12140040-C-A ***
14624953-T-A 12513153-T-A ***
14645049-A-G 12533118-A-G ***
13465222-G-A 11309546-G-A ***
13461227-A-T 11305551-A-T ***
6099894-C-A 6231853-C-A ***
9336640-T-G 9499031-T-G ***
6179869-G-A 6311828-G-A IR3_Dst ***
6250326-C-A 6382285-C-A IR3_Dst ***
6295527-G-T 6427486-G-T IR3_Dst ***
6682440-A-T 6814399-A-T ***
6806912-C-T 6938871-C-T ***
7016106-C-T 7148065-C-T ***
7463985-A-C 7595944-A-C IR1_L ***
7463992-A-C 7595951-A-C IR1_L ***
7463995-G-A 7595954-G-A IR1_L ***
7463999-C-T 7595958-C-T IR1_L ***
7490596-C-T 7622555-C-T IR1_L ***
8792937-T-A 8924896-T-A ***
9303233-G-C 9465624-G-C ***
9431977-A-C 9594368-A-C ***
13455584-C-T 11299908-C-T ***
13195835-A-C 11040159-A-C ***
13452876-T-A 11297200-T-A ***
13452882-T-C 11297206-T-C ***
13452895-A-T 11297219-A-T ***
13452915-A-T 11297239-A-T ***
13453145-A-G 11297469-A-G ***
13453176-T-C 11297500-T-C ***
13453181-T-A 11297505-T-A ***
13453183-C-T 11297507-C-T ***
13453186-T-C 11297510-T-C ***
13453189-C-A 11297513-C-A ***
13453191-T-C 11297515-T-C ***
13453231-T-G 11297555-T-G ***
13453246-T-C 11297570-T-C ***
28787315-CA-TT 26641168-CA-TT ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: QETMC1491458592386578275974
Used in age calculations1491458592386578275974
Counts of SNPs00
Variant counts last updated 2017-11-13 21:38:00.



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