Tree Position

R-P312/S116 > Z290 > L21/S145 > DF63/S522 > BY592 > CTS5454 > Y94967

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
624748
BigY2
624748
26274608-A-C 24128461-A-C P1_Y1 ***A*
18295611-A-C 16183731-A-C P6_Prx ***A*
25568146-G-C 23421999-G-C P1_gr1 ***A*
26121043-C-T 23974896-C-T P1_Y1 A*
22313132-C-G 20151246-C-G DYZ19 ***A*
6266572-G-A 6398531-G-A IR3_Dst ***A*
19684879-T-A 17572999-T-A P5_Prx ***A*
6235748-G-T 6367707-G-T IR3_Dst ***A*
6235747-T-C 6367706-T-C IR3_Dst ***A*
15694217-A-T 13582337-A-T Y94460 YY++
15876249-C-T 13764369-C-T Y95020 YY++
16341633-C-T 14229753-C-T Y96021 YY++
16416402-A-T 14304522-A-T Y96264 YY++
16590013-A-G 14478133-A-G Y96778 YY++
16859121-T-A 14747241-T-A Y97509 YY++
17012211-T-C 14900331-T-C PR6000 Y97948 YY++
19195469-G-A 17083589-G-A Y103966 YY++
17687777-T-C 15575897-T-C Y99940 YY++
18392398-C-T 16280518-C-T Y101861 P6_Gap ++
14864931-G-T 12752997-G-T YY++
19338056-T-C 17226176-T-C Y104444 YY++
19504458-T-A 17392578-T-A Y104981 YY++
21843541-C-T 19681655-C-T Y107664 YY++
13711154-G-T 11555478-G-T +
22472445-G-A 20310559-G-A DYZ19 +**
22475433-T-G 20313547-T-G DYZ19 ***+
22946282-G-A 20784396-G-A Y110200 YY++
24871327-A-G 22725180-A-G P3_b2 +
15024701-G-T 12912789-G-T Y92813 YY++
16567197-G-A 14455317-G-A Y11249 YY++
14863978-C-T 12752044-C-T Y92379 YY++
8766733-C-T 8898692-C-T Y87944 YY++
14210630-A-C 12089924-A-C Y90647 YY++
7685488-G-A 7817447-G-A Y84672 YY++
9745712-A-C 9908103-A-C Z12236 +
13814381-C-T 11693675-C-T Y89667 ++
13677311-A-G 11521635-A-G ++
22300342-C-G 20138456-C-G DYZ19 ****
22233536-C-A 20071650-C-A DYZ19 ****
15696804-C-A 13584924-C-A **
15140807-T-C 13028894-T-C **
15918386-G-T 13806506-G-T **
15286558-G-T 13174657-G-T Y93439 **
15260180-C-A 13148264-C-A **
15150613-G-T 13038700-G-T **
16278620-C-A 14166740-C-A **
16298317-A-C 14186437-A-C **
16298369-C-A 14186489-C-A **
15321450-C-A 13209568-C-A **
16431111-A-G 14319231-A-G **
16431112-G-C 14319232-G-C **
16497985-C-A 14386105-C-A **
16503460-G-T 14391580-G-T **
14836958-C-A 12725025-C-A **
16623182-C-A 14511302-C-A **
15903972-A-T 13792092-A-T **
15353907-C-A 13242026-C-A **
15756468-G-C 13644588-G-C **
15413349-G-C 13301469-G-C **
15574910-C-G 13463030-C-G **
15503520-T-A 13391640-T-A **
15498491-G-T 13386611-G-T **
15495019-A-C 13383139-A-C **
15446862-C-G 13334982-C-G **
15413389-A-C 13301509-A-C **
15396513-G-T 13284633-G-T **
15860007-G-T 13748127-G-T **
15365779-C-A 13253899-C-A **
15756469-T-A 13644589-T-A **
15786733-C-A 13674853-C-A **
16682628-C-A 14570748-C-A **
15791283-C-A 13679403-C-A **
15663975-C-A 13552095-C-A Y94385 **
15632121-C-A 13520241-C-A **
3641092-CTCTTTCTTTCTT-C 3773051-CTCTTTCTTTCTT-C 13×TCTT**
16707294-T-C 14595414-T-C **
17523902-A-T 15412022-A-T **
17340871-C-G 15228991-C-G **
17380602-C-A 15268722-C-A **
17420439-C-A 15308559-C-A **
17425152-C-A 15313272-C-A **
17446970-G-T 15335090-G-T **
17470810-C-A 15358930-C-A **
17561399-C-A 15449519-C-A **
17213183-T-G 15101303-T-G **
17584020-C-A 15472140-C-A **
17596866-C-A 15484986-C-A **
17625511-C-A 15513631-C-A Y99752 **
17654992-C-A 15543112-C-A **
17717191-C-A 15605311-C-A **
17943916-C-A 15832036-C-A **
17946903-G-GTT 15835023-G-GTT 11×T**
17323631-AGAAG-A 15211751-AGAAG-A **
17181463-A-T 15069583-A-T **
16819884-T-A 14708004-T-A **
16938178-C-A 14826298-C-A **
16834066-C-A 14722186-C-A **
16868741-T-A 14756861-T-A **
16868746-C-T 14756866-C-T 22×AT**
16914396-G-A 14802516-G-A **
16929513-A-T 14817633-A-T **
16931083-G-T 14819203-G-T **
16936112-C-A 14824232-C-A **
16971257-C-A 14859377-C-A **
17139620-C-A 15027740-C-A **
16978650-C-G 14866770-C-G **
14735099-A-T 12623167-A-T **
16978671-A-T 14866791-A-T **
17029278-A-C 14917398-A-C **
17033283-C-G 14921403-C-G **
17038492-G-T 14926612-G-T **
17136428-T-G 15024548-T-G **
14762339-G-T 12650408-G-T **
14142873-G-T 12022167-G-T **
14658367-T-G 12546432-T-G **
11025356-A-T **
11002055-C-A **
11003777-C-A **
11016406-G-A **
11017644-C-A **
11017669-A-G **
11019324-C-A **
11027209-T-A **
11001825-T-A **
11034971-A-T **
11038133-T-G **
11038153-T-G **
13212670-G-A 11056994-G-A **
13224619-T-G 11068943-T-G **
13224722-C-G 11069046-C-G **
13225642-C-A 11069966-C-A **
11001980-C-A **
10999665-T-C **
13258367-T-G 11102691-T-G **
10982886-C-A **
10958531-C-A **
10959715-C-A **
10960256-C-A **
10971175-C-T **
10977930-C-A **
10980818-C-A **
10987290-G-C **
10999596-T-G **
10988065-A-T **
10988070-A-T **
10988075-A-T **
10989873-T-A **
10989916-CACTCT-C **
10991117-C-A **
21656836-GAAATA-G 19494950-GAAATA-G 10×AAATA**
13236163-A-T 11080487-A-T **
13280630-C-A 11124954-C-A **
14649577-C-A 12537642-C-A **
14474966-T-A 12354235-T-A **
14294336-A-C 12173630-A-C **
14301697-G-T 12180991-G-T **
14328399-C-A 12207693-C-A **
14367945-G-T 12247241-G-T **
14425425-G-T 12304700-G-T **
14474586-A-T 12353855-A-T **
14483692-C-A 12362961-C-A **
14178060-C-A 12057354-C-A **
14488581-C-A 12367850-C-A **
14508725-G-A 12396930-G-A **
14529247-AAAG-A 12417448-AAAG-A **
14560778-C-A 12448979-C-A **
14560849-C-A 12449050-C-A **
14570210-T-A 12458410-T-A **
14605823-T-G 12494025-T-G **
14218866-T-A 12098160-T-A **
14177964-T-G 12057258-T-G **
13280694-G-T 11125018-G-T **
13556775-C-G 11401099-C-G **
13302310-C-A 11146634-C-A **
13454719-T-G 11299043-T-G **
13488726-C-A 11333050-C-A **
13498195-C-A 11342519-C-A **
13535296-C-A 11379620-C-A **
13553230-A-C 11397554-A-C **
13587895-C-A 11432219-C-A **
17962779-C-T 15850899-C-T **
13597081-T-G 11441405-T-G **
11643755-A-T **
11665982-A-C **
11672562-C-A **
13821727-T-A 11701021-T-A **
13856580-A-C 11735874-A-C **
13887597-A-G 11766891-A-G **
17960995-C-A 15849115-C-A **
19117279-C-G 17005399-C-G **
18086354-C-A 15974474-C-A **
23488854-A-AT 21326968-A-AT **
23267033-T-G 21105147-T-G **
23272311-TTC-T 21110425-TTC-T **
23340563-G-T 21178677-G-T **
23393217-C-A 21231331-C-A **
23419631-C-A 21257745-C-A **
23441321-C-A 21279435-C-A **
23609954-A-C 21448068-A-C **
23114034-TA-T 20952148-TA-T **
23997456-C-A 21851309-C-A **
24278395-G-T 22132248-G-T P3_b1 **
24403148-C-A 22257001-C-A **
24405928-C-T 22259781-C-T **
24416883-A-T 22270736-A-T **
24509380-G-A 22363233-G-A **
24575853-G-A 22429706-G-A P3_t2 **
23120081-C-A 20958195-C-A **
23061178-C-A 20899292-C-A **
26059839-A-T 23913692-A-T P1_Y1 **
22446652-C-T 20284766-C-T DYZ19 **
22124390-G-T 19962504-G-T **
22171668-A-T 20009782-A-T **
22171670-A-T 20009784-A-T **
22171676-A-T 20009790-A-T **
22171781-G-T 20009895-G-T **
22212197-C-A 20050311-C-A **
22540579-C-A 20378693-C-A **
22965848-C-A 20803962-C-A **
22552238-A-G 20390352-A-G Y109050 **
22598745-C-A 20436859-C-A 15×A**
22619315-C-A 20457429-C-A **
22665866-T-G 20503980-T-G **
22732906-T-G 20571020-T-G **
22792559-T-G 20630673-T-G **
22912706-G-T 20750820-G-T **
25096638-G-T 22950491-G-T g1 **
26059846-A-T 23913699-A-T P1_Y1 **
22036035-C-A 19874149-C-A **
56840778-G-T **
56832825-A-T **
56833683-C-A **
56833688-C-T **
56839100-C-A **
56839113-A-ACT **
56839138-G-C **
56842267-G-T **
28760254-C-A 26614107-C-A **
56845540-C-A **
56847286-T-A **
56848798-T-G **
56848807-T-C **
6827-A-T **
6844-G-A **
6876-T-A **
56827152-AATTCCATTCC-A **
28759547-C-A 26613400-C-A **
26059849-A-T 23913702-A-T P1_Y1 **
28505603-C-A 26359456-C-A **
26059853-A-T 23913706-A-T P1_Y1 **
27570906-G-A 25424759-G-A P1_Y2 **
27570908-ATT-A 25424761-ATT-A P1_Y2 **
28463750-T-G 26317603-T-G **
28465765-C-A 26319618-C-A **
28486159-T-A 26340012-T-A **
28505658-T-A 26359511-T-A **
28741998-C-A 26595851-C-A **
28510425-C-A 26364278-C-A **
28603571-A-AT 26457424-A-AT 8×T**
28622701-A-T 26476554-A-T **
28633353-C-A 26487206-C-A **
28643025-G-T 26496878-G-T **
28659874-C-A 26513727-C-A **
28688987-C-A 26542840-C-A **
22079823-C-A 19917937-C-A **
22028687-C-A 19866801-C-A **
18106652-A-G 15994772-A-G **
19409396-A-AC 17297516-A-AC **
19259133-G-C 17147253-G-C **
19299127-C-A 17187247-C-A **
19302383-C-A 17190503-C-A **
19311023-C-A 17199143-C-A **
19313713-A-G 17201833-A-G **
19358224-T-A 17246344-T-A **
19414945-C-A 17303065-C-A **
10935697-C-A **
19482239-C-A 17370359-C-A **
19523431-G-A 17411551-G-A **
19530346-G-A 17418466-G-A **
19588119-C-A 17476239-C-A P5_Prx **
19600430-A-T 17488550-A-T P5_Prx **
19600449-A-C 17488569-A-C P5_Prx **
19700761-A-T 17588881-A-T P5_Prx **
19248560-C-G 17136680-C-G **
19109986-G-A 16998106-G-A **
19700854-A-C 17588974-A-C P5_Prx **
18422843-C-A 16310963-C-A P6_Gap **
18108580-T-A 15996700-T-A **
18108582-C-G 15996702-C-G **
18108596-T-A 15996716-T-A **
18154431-C-A 16042551-C-A **
18174896-A-G 16063016-A-G **
18177324-C-A 16065444-C-A **
18596496-T-A 16484616-T-A **
19097114-C-A 16985234-C-A **
18646080-T-A 16534200-T-A **
18659783-C-A 16547903-C-A **
18738682-C-A 16626802-C-A A18291 **
18810796-C-A 16698916-C-A **
18825727-G-C 16713847-G-C **
18950610-T-G 16838730-T-G **
19044278-G-T 16932398-G-T **
19700766-A-T 17588886-A-T P5_Prx **
19700855-G-C 17588975-G-C P5_Prx **
21993829-C-A 19831943-C-A **
21582298-G-T 19420412-G-T **
21317684-C-A 19155798-C-A **
21351606-G-A 19189720-G-A **
21392367-C-A 19230481-C-A **
21468173-T-G 19306287-T-G **
21486409-G-T 19324523-G-T **
21513759-C-A 19351873-C-A **
21650123-C-A 19488237-C-A **
21240681-T-G 19078795-T-G **
21700429-C-A 19538543-C-A **
21815157-C-A 19653271-C-A **
21828467-C-A 19666581-C-A **
21856810-T-G 19694924-T-G **
21863813-C-T 19701927-C-T Y28869 **
21910060-A-G 19748174-A-G **
21935323-C-G 19773437-C-G **
21296748-G-T 19134862-G-T **
21097374-C-A 18935488-C-A **
19739403-A-C 17627523-A-C P5_Prx **
20632041-C-A 18470155-C-A P4_Prx **
19739423-C-A 17627543-C-A P5_Prx **
20074020-G-C 17962140-G-C P5_Dst **
20074024-A-ATGTG 17962144-A-ATGTG P5_Dst **
20230152-TA-T 18068266-TA-T P5_Dst 16×A**
20325979-G-T 18164093-G-T P5_Dst **
20337461-A-C 18175575-A-C P5_Dst **
20337565-A-C 18175679-A-C P5_Dst **
20700700-CAG-C 18538814-CAG-C P4_Prx **
21092227-T-G 18930341-T-G **
20723015-C-A 18561129-C-A P4_Prx **
20757285-T-TA 18595399-T-TA P4_Prx **
20809442-A-G 18647556-A-G P4_Gap **
20815912-C-A 18654026-C-A P4_Gap **
20834038-A-T 18672152-A-T P4_Gap **
20908159-G-T 18746273-G-T P4_Dst **
21082096-C-A 18920210-C-A **
10942909-T-A **
10998101-C-A **
10932560-C-A **
4173667-G-T 4305626-G-T **
3286336-AC-A 3418295-AC-A **
3535916-C-A 3667875-C-A **
3804657-C-A 3936616-C-A **
3923181-C-A 4055140-C-A **
4034504-C-A 4166463-C-A **
4114806-G-A 4246765-G-A **
4174448-C-A 4306407-C-A **
3274826-T-A 3406785-T-A **
4243676-C-A 4375635-C-A **
4351555-C-G 4483514-C-G **
4389132-T-A 4521091-T-A **
4417273-C-A 4549232-C-A **
4463247-G-T 4595206-G-T **
4645609-C-A 4777568-C-A **
3274884-G-T 3406843-G-T **
3272649-C-A 3404608-C-A **
4679868-C-A 4811827-C-A **
22734361-C-A 20572475-C-A **
7621970-C-A 7753929-C-A **
9979136-C-A 10141527-C-A **
10750759-G-T **
17884705-C-A 15772825-C-A **
10686733-T-G **
14774253-C-CTT 12662322-C-CTT 28×T**
10679588-G-T **
3072197-C-A 3204156-C-A **
2687033-C-A 2818992-C-A **
2702397-G-T 2834356-G-T Y81239 **
2740258-G-GAC 2872217-G-GAC **
2790500-A-T 2922459-A-T **
2845149-G-C 2977108-G-C **
2901561-C-A 3033520-C-A **
2909080-T-G 3041039-T-G **
4665352-C-A 4797311-C-A **
4720865-A-C 4852824-A-C **
14353886-C-A 12233181-C-A **
6759247-C-A 6891206-C-A **
6520178-C-A 6652137-C-A **
6652569-A-T 6784528-A-T **
6685739-T-A 6817698-T-A **
6685756-T-A 6817715-T-A **
6731470-C-A 6863429-C-A **
6734299-C-A 6866258-C-A **
6815662-T-C 6947621-T-C **
6491240-A-T 6623199-A-T **
6861591-A-C 6993550-A-C **
6886719-T-C 7018678-T-C **
6920647-T-G 7052606-T-G **
6978133-C-A 7110092-C-A **
7029556-C-A 7161515-C-A **
7048063-C-A 7180022-C-A **
6491269-A-G 6623228-A-G **
6305892-TC-T 6437851-TC-T IR3_Dst **
4750789-C-A 4882748-C-A **
5217081-A-T 5349040-A-T **
4750800-G-C 4882759-G-C **
4889369-A-T 5021328-A-T **
4900144-C-A 5032103-C-A **
4918901-C-A 5050860-C-A **
4919534-C-A 5051493-C-A **
10930158-C-A **
5217092-C-A 5349051-C-A **
5999690-C-A 6131649-C-A **
5447036-T-G 5578995-T-G **
5708832-T-A 5840791-T-A **
5813384-C-A 5945343-C-A **
5829192-C-A 5961151-C-A **
5957197-T-C 6089156-T-C **
5969650-G-A 6101609-G-A **
5987087-T-G 6119046-T-G **
13880198-C-A 11759492-C-A **
10753626-C-A **
7100810-C-A 7232769-C-A **
24575877-T-TA 22429730-T-TA P3_t2 **
19600439-G-T 17488559-G-T P5_Prx **
14184727-CAAA-C 12064021-CAAA-C 14×A**
16536203-C-A 14424323-C-A **
19600462-G-A 17488582-G-A P5_Prx **
25931648-AAAAT-A 23785501-AAAAT-A P1_Y1 **
17032594-C-A 14920714-C-A **
10926744-T-A **
16309571-CAAAA-C 14197691-CAAAA-C 17×A**
10958567-A-G **
15177540-C-A 13065626-C-A **
10906160-C-G **
10906181-C-G **
10906194-A-T **
13556274-A-G 11400598-A-G **
15406855-A-G 13294975-A-G **
15279100-C-A 13167199-C-A **
10981001-C-A **
13880242-C-T 11759536-C-T Y48786 **
16164474-CAA-C 14052594-CAA-C P8_Dst 19×A**
13535283-C-T 11379607-C-T **
8020244-G-A 8152203-G-A **
9678812-C-A 9841203-C-A IR3_Prx **
58985312-C-A 56839165-C-A **
3728025-G-A 3859984-G-A **
14702456-C-A 12590522-C-A **
5858423-C-A 5990382-C-A **
28771641-C-A 26625494-C-A PF7023 ****
21070017-C-A 18908131-C-A **
16656628-G-A 14544748-G-A PF800 ****
16701526-A-T 14589646-A-T **
10942892-C-A **
10942896-T-C **
19004571-C-A 16892691-C-A **
13485702-C-T 11330026-C-T **
11001929-A-T **
14470510-C-A 12349779-C-A **
10866084-C-CT **
10964766-CT-C **
10964782-C-A **
10882920-C-A **
10998010-T-A **
14293594-C-A 12172888-C-A **
19466910-C-A 17355030-C-A **
3389108-T-A 3521067-T-A **
6576811-C-A 6708770-C-A **
11025978-C-A **
7028445-C-A 7160404-C-A **
10811190-C-A **
16682623-C-A 14570743-C-A **
4223248-C-A 4355207-C-A **
7340302-C-A 7472261-C-A **
13556277-C-G 11400601-C-G **
14539221-C-A 12427422-C-A **
10999578-T-C **
10808270-C-A **
10999610-A-C **
20108240-AT-A 17996360-AT-A P5_Dst **
22796442-C-A 20634556-C-A **
17865956-C-A 15754076-C-A **
19600426-G-T 17488546-G-T P5_Prx **
10792415-TCAATC-T **
23401495-C-A 21239609-C-A **
18850375-C-A 16738495-C-A Y102866 **
4003070-C-A 4135029-C-A **
9040310-A-C 9202701-A-C **
10999581-T-A **
14424953-G-T 12304228-G-T **
21156831-GTTTTTT-G 18994945-GTTTTTT-G 19×T**
10954965-A-C **
10807209-T-G **
7063887-C-A 7195846-C-A **
4931565-G-T 5063524-G-T **
26855-T-C **
10061280-A-G 10223671-A-G **
9700843-C-A 9863234-C-A IR3_Prx **
7109379-A-T 7241338-A-T **
9983160-T-G 10145551-T-G **
9991933-C-A 10154324-C-A **
10037834-A-C 10200225-A-C **
10061276-G-T 10223667-G-T **
10061291-C-T 10223682-C-T **
9666579-A-AAATAAT 9828970-A-AAATAAT IR3_Prx 11×AAT**
10061294-A-C 10223685-A-C **
10093823-CTGCT-C 10256214-CTGCT-C **
10653931-C-A **
10654381-C-G **
10654404-A-T **
10655903-C-G **
9669944-G-T 9832335-G-T IR3_Prx **
9639039-T-G 9801430-T-G IR3_Prx **
10662396-C-T **
9194052-G-C 9356443-G-C **
8842464-G-C 8974423-G-C **
8906904-C-A 9038863-C-A **
9113756-C-A **
9118138-G-T **
8987634-A-C 9150025-A-C **
9077076-G-T 9239467-G-T **
9198209-A-T 9360600-A-T **
9590586-T-C 9752977-T-C IR3_Prx **
9221709-A-T 9384100-A-T **
9461851-T-G 9624242-T-G **
9493533-G-A 9655924-G-A **
9516952-C-A 9679343-C-A **
9520051-C-A 9682442-C-A **
9522433-T-C 9684824-T-C **
10662106-G-T **
10671518-T-A **
8290682-C-A 8422641-C-A **
10870643-TTTCTA-T **
10828468-T-G **
10849972-C-A **
10850015-C-A **
10866096-C-T **
10867157-C-A **
10870633-A-ACTCAACTCCAATCCG **
10873824-C-A **
10818693-C-G **
10877247-GCATTC-G **
10916124-G-T **
10916813-G-T **
10916819-C-A **
10919228-A-T **
10920819-G-T **
10819650-C-A **
10816686-C-A **
10671543-C-G **
10765455-T-C **
10677370-C-T **
10689170-T-G **
10744702-T-G **
10751052-T-G **
10759864-C-A **
10761023-C-T **
10792393-A-G **
10806456-T-C **
10792402-C-T **
10792403-A-T **
10792483-C-G **
10792485-G-T **
10796176-C-A **
10801691-C-A **
10804730-G-C **
8669621-C-A 8801580-C-A **
9962105-A-T 10124496-A-T **
7784499-C-A 7916458-C-A **
7917015-C-A 8048974-C-A **
7626264-C-A 7758223-C-A **
7631576-C-G 7763535-C-G **
7470734-C-A 7602693-C-A IR1_L **
7222200-C-A 7354159-C-A **
7646858-C-A 7778817-C-A Y84561 **
8035994-C-A 8167953-C-A **
7412892-G-GA 7544851-G-GA 8×A**
8053427-A-C 8185386-A-C **
7381078-A-T 7513037-A-T **
7336264-A-C 7468223-A-C **
7241209-T-A 7373168-T-A **
7773141-A-T 7905100-A-T **
7655324-T-G 7787283-T-G **
7207418-A-T 7339377-A-T **
7199412-C-A 7331371-C-A **
7228515-C-A 7360474-C-A **
7608467-T-G 7740426-T-G **
8119254-C-A 8251213-C-A **
8160172-C-A 8292131-C-A **
7541378-G-T 7673337-G-T **
7159324-A-C 7291283-A-C **
7141016-C-A 7272975-C-A **
8119052-AGT-A 8251011-AGT-A **
7572820-C-A 7704779-C-A **
8102446-G-T 8234405-G-T **
7176960-A-T 7308919-A-T **
23046328-C-A 20884442-C-A ***
17516338-C-A 15404458-C-A ***
6675917-C-A 6807876-C-A ***
7311253-C-A 7443212-C-A ***
6649327-C-A 6781286-C-A ***
8398840-CAA-C,CAAA 8530799-CAA-C,CAAA 17×A***
23088854-C-A 20926968-C-A ***
23055140-C-A 20893254-C-A ***
16265158-C-A 14153278-C-A ***
23847985-G-T 21686099-G-T ***
23803449-C-A 21641563-C-A ***
6351952-G-T 6483911-G-T ***
23138281-C-A 20976395-C-A ***
7534406-GT-G,GTTT 7666365-GT-G,GTTT 19×T***
17591605-C-A 15479725-C-A ***
11001472-A-C,G ***
16223471-C-A 14111591-C-A ***
23276358-C-A 21114472-C-A ***
16196359-C-A 14084479-C-A ***
17714172-C-A 15602292-C-A ***
23271732-T-TAA 21109846-T-TAA 11×A***
19382390-C-A 17270510-C-A ***
16588594-C-A 14476714-C-A ***
16768835-C-T 14656955-C-T F2258 ***
8973278-G-GA 9135669-G-GA 11×A***
6131081-G-A 6263040-G-A ***
56830540-TGCTGAATTCCATTGCATTCC-T,TATTGAATTCC ***
26193462-A-G 24047315-A-G P1_Y1 ***
13846476-T-A 11725770-T-A ***
13678614-G-A 11522938-G-A ***
16737038-C-A 14625158-C-A ***
17126145-C-A 15014265-C-A ***
10887980-T-A,C ***
13460509-C-A 11304833-C-A ***
7020073-C-A 7152032-C-A ***
16863600-C-A 14751720-C-A ***
7032947-C-A 7164906-C-A ***
7113244-AT-A,ATT 7245203-AT-A,ATT 16×T***
9373097-T-TA 9535488-T-TA ***
6786806-T-C 6918765-T-C ***
25849701-T-TA 23703554-T-TA P1_Y1 9×A***
24805863-G-T 22659716-G-T P3_b2 ***
25323717-A-G 23177570-A-G P2_r1 ***
25222841-AC-A 23076694-AC-A P2_r1 ***
10648059-C-A ***
25050383-C-G 22904236-C-G g1 ***
24943356-C-A 22797209-C-A g1 ***
24930554-CTATT-C 22784407-CTATT-C g1 ***
23836442-TTGCAAAATTCTGTCTCTAACAAAAAAATTAA-T 21674556-TTGCAAAATTCTGTCTCTAACAAAAAAATTAA-T ***
19984220-A-AT 17872340-A-AT P5_Prx 10×T***
22339190-C-G 20177304-C-G DYZ19 ***
22336692-A-G 20174806-A-G DYZ19 ***
22261664-T-C 20099778-T-C DYZ19 ***
22223429-G-C 20061543-G-C DYZ19 ***
28633457-C-A 26487310-C-A ***
19985593-T-C 17873713-T-C P5_Prx ***
23002504-C-A 20840618-C-A ***
22603280-C-A 20441394-C-A ***
13218125-A-C 11062449-A-C ***
19006136-CAAAAA-C,CAAAA 16894256-CAAAAA-C,CAAAA 21×A***
2836350-C-CTT 2968309-C-CTT 19×T***
9877346-C-A 10039737-C-A ***
9843184-CA-C,CAA 10005575-CA-C,CAA 15×A***
9778327-C-A 9940718-C-A ***
7784639-C-A 7916598-C-A ***
21105583-C-A 18943697-C-A ***
21105350-C-A 18943464-C-A ***
14187874-C-A 12067168-C-A ***
18762805-C-A 16650925-C-A ***
14219788-C-A 12099082-C-A ***
7923508-C-A 8055467-C-A ***
7933766-C-A 8065725-C-A ***
18973288-C-A 16861408-C-A PH4124 ***
14377202-C-A 12256498-C-A ***
15382743-T-C 13270863-T-C ***
15495629-C-A 13383749-C-A ***
15151807-C-A 13039894-C-A ***
15114898-G-A 13002985-G-A ***
14949173-G-A 12837247-G-A ***
2909372-C-A 3041331-C-A ***
19549601-C-A 17437721-C-A ***
8344132-G-T 8476091-G-T ***
8533407-CT-C,CTT 8665366-CT-C,CTT 14×T***
15156730-C-A 13044817-C-A ***
19048349-TTATATA-T,TTATATATA 16936469-TTATATA-T,TTATATATA 10×TA***
14587935-C-A 12476135-C-A ***
15288703-T-C 13176802-T-C ***
8090596-C-A 8222555-C-A ***
15362575-C-A 13250695-C-A ***
18754958-G-T 16643078-G-T ***
19054335-C-A 16942455-C-A ***
13854437-C-A 11733731-C-A ***
21529987-C-A 19368101-C-A F24411 ***
22796138-C-A 20634252-C-A ***
22446672-G-A 20284786-G-A DYZ19 ***
22128273-C-A 19966387-C-A ***
13460451-G-A 11304775-G-A ***
13460453-A-C 11304777-A-C ***
13460450-T-C 11304774-T-C ***
22191839-C-A 20029953-C-A ***
22201087-G-T 20039201-G-T ***
15822381-C-A 13710501-C-A ***
13460467-C-G,T 11304791-C-G,T ***
8270198-C-A 8402157-C-A ***
22614452-C-A 20452566-C-A ***
15859437-CTTT-C,CTTTT 13747557-CTTT-C,CTTTT 17×T***
22698963-C-A 20537077-C-A ***
17859617-C-A 15747737-C-A ***
22912822-C-A 20750936-C-A ***
22128117-C-A 19966231-C-A ***
13461901-C-A,T 11306225-C-A,T ***
18569850-C-A 16457970-C-A ***
18124632-T-TAA 16012752-T-TAA 15×A***
7702729-C-A 7834688-C-A ***
21706389-C-A 19544503-C-A ***
15580319-G-A 13468439-G-A ***
15161441-C-A 13049527-C-A ***
18173402-C-A 16061522-C-A ***
21883643-AC-A 19721757-AC-A ***
21934506-C-A 19772620-C-A ***
22044740-G-T 19882854-G-T ***
15657068-C-A 13545188-C-A ***
21946148-C-A 19784262-C-A ***
21962152-C-A 19800266-C-A ***
10648071-C-A ***
10648087-C-T ***
7648785-C-A 7780744-C-A ***
16888207-C-A 14776327-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

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