Cepela
BigY2: 348785MDKA Birth: Czech Republic
Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | BigY2 348785 |
---|---|---|---|---|---|---|---|---|
10705-T-A | + | |||||||
25096448-G-GGAAAGAAA | 22950301-G-GGAAAGAAA | g1 | 20×GAAA | * | ||||
22255781-T-G | 20093895-T-G | DYZ19 | * | |||||
13472141-G-A | 11316465-G-A | ** | ||||||
13472160-G-T | 11316484-G-T | ** | ||||||
22229646-A-T | 20067760-A-T | BY43663 | DYZ19 | ** | ||||
24283327-C-A | 22137180-C-A | P3_t1 | ** | |||||
22234188-T-C | 20072302-T-C | DYZ19 | ** | |||||
17144063-T-C | 15032183-T-C | ** | ||||||
27838015-A-G | 25691868-A-G | P1_Y2 | ** | |||||
6858625-A-G | 6990584-A-G | ** | ||||||
13696317-T-G | 11540641-T-G | ** | ||||||
20478262-C-T | 18316376-C-T | P5_Dst | ** | |||||
15671151-GTT-G | 13559271-GTT-G | 13×T | ** | |||||
10780065-C-A | ** | |||||||
10656337-A-T | ** | |||||||
11025437-T-G | ** | |||||||
13472123-G-T | 11316447-G-T | ** | ||||||
13472131-G-A | 11316455-G-A | ** | ||||||
13472172-A-C | 11316496-A-C | ** | ||||||
13472182-A-T | 11316506-A-T | ** | ||||||
25994017-A-AG | 23847870-A-AG | P1_Y1 | ** | |||||
4292973-C-A | 4424932-C-A | ** | ||||||
11025980-C-G | ** | |||||||
11025995-C-T | ** | |||||||
18147559-A-C | 16035679-A-C | ** | ||||||
10752341-C-A | ** | |||||||
10752351-CTCCAT-C | ** | |||||||
13846722-C-A | 11726016-C-A | ** | ||||||
15988141-C-A | 13876261-C-A | ** | ||||||
6826935-G-T | 6958894-G-T | ** | ||||||
23439886-A-C | 21278000-A-C | ** | ||||||
14802799-C-A | 12690870-C-A | ** | ||||||
2806240-C-A | 2938199-C-A | ** | ||||||
10980625-T-C | ** | |||||||
16968150-C-A | 14856270-C-A | 26×A | ** | |||||
6915967-AT-A | 7047926-AT-A | ** | ||||||
5775660-C-A | 5907619-C-A | ** | ||||||
21367362-C-A | 19205476-C-A | ** | ||||||
10747027-C-T | ** | |||||||
11021480-T-A | ** | |||||||
11021507-TA-T | ** | |||||||
11021526-CCATTT-C | ** | |||||||
10766295-C-A | ** | |||||||
10746897-C-T | ** | |||||||
17144012-C-G | 15032132-C-G | ** | ||||||
17144034-A-G | 15032154-A-G | ** | ||||||
17144046-C-T | 15032166-C-T | ** | ||||||
17144058-G-A | 15032178-G-A | ** | ||||||
17144075-AT-A | 15032195-AT-A | ** | ||||||
16926817-C-A | 14814937-C-A | ** | ||||||
10984385-T-C | ** | |||||||
10745221-GTTCCA-G | ** | |||||||
10770709-G-A | FT430453 | ** | ||||||
13860947-C-A | 11740241-C-A | ** | ||||||
16636868-C-A | 14524988-C-A | ** | ||||||
10651606-TC-T | ** | |||||||
10651612-T-A | ** | |||||||
10651613-C-CA | ** | |||||||
10651654-T-A | ** | |||||||
10651659-C-G | ** | |||||||
10656392-C-T | ** | |||||||
23773757-C-A | 21611871-C-A | ** | ||||||
10964071-G-T | ** | |||||||
11021504-C-CT | ** | |||||||
10668577-T-C | ** | |||||||
23438864-A-G | 21276978-A-G | ** | ||||||
14788076-T-C | 12676147-T-C | ** | ||||||
14788085-C-T | 12676156-C-T | ** | ||||||
14490912-C-A | 12370181-C-A | Y66803 | ** | |||||
11034833-G-A | ** | |||||||
28596562-ATT-A | 26450415-ATT-A | 12×T | ** | |||||
5996391-C-A | 6128350-C-A | ** | ||||||
19202887-A-G | 17091007-A-G | ** | ||||||
8481949-C-A | 8613908-C-A | ** | ||||||
18730844-C-A | 16618964-C-A | ** | ||||||
17143990-G-C | 15032110-G-C | ** | ||||||
17143994-C-T | 15032114-C-T | ** | ||||||
11034810-A-T | ** | |||||||
10984375-T-C | ** | |||||||
10984380-T-C | ** | |||||||
15103491-C-A | 12991579-C-A | ** | ||||||
4557010-C-A | 4688969-C-A | ** | ||||||
4888295-TA-T | 5020254-TA-T | ** | ||||||
5524917-C-CA | 5656876-C-CA | 9×A | ** | |||||
17144009-C-A | 15032129-C-A | ** | ||||||
17144011-C-T | 15032131-C-T | ** | ||||||
2758561-C-A | 2890520-C-A | ** | ||||||
2772989-C-A | 2904948-C-A | ** | ||||||
2773476-G-T | 2905435-G-T | ** | ||||||
2788514-A-C | 2920473-A-C | ** | ||||||
2790533-C-A | 2922492-C-A | ** | ||||||
2791232-A-T | 2923191-A-T | ** | ||||||
2806232-AG-A | 2938191-AG-A | ** | ||||||
2806240-C-CG | 2938199-C-CG | ** | ||||||
2973707-T-C | 3105666-T-C | ** | ||||||
2982869-G-T | 3114828-G-T | ** | ||||||
3061612-C-T | 3193571-C-T | FT344611 | ** | |||||
3118044-G-T | 3250003-G-T | ** | ||||||
3178920-T-A | 3310879-T-A | ** | ||||||
3229091-C-T | 3361050-C-T | ** | ||||||
3273157-T-C | 3405116-T-C | ** | ||||||
3273828-A-G | 3405787-A-G | ** | ||||||
3335051-G-T | 3467010-G-T | ** | ||||||
3343318-T-G | 3475277-T-G | ** | ||||||
3343326-T-A | 3475285-T-A | ** | ||||||
3343327-C-G | 3475286-C-G | ** | ||||||
3347689-T-A | 3479648-T-A | ** | ||||||
3407950-C-A | 3539909-C-A | ** | ||||||
3442977-T-C | 3574936-T-C | ** | ||||||
3534023-G-T | 3665982-G-T | ** | ||||||
3535669-C-A | 3667628-C-A | ** | ||||||
3536307-A-T | 3668266-A-T | ** | ||||||
3536390-T-G | 3668349-T-G | ** | ||||||
3536482-C-T | 3668441-C-T | ** | ||||||
3536587-T-A | 3668546-T-A | ** | ||||||
3547003-G-A | 3678962-G-A | ** | ||||||
3627144-T-A | 3759103-T-A | ** | ||||||
3627196-T-A | 3759155-T-A | ** | ||||||
3627240-T-G | 3759199-T-G | ** | ||||||
3659328-G-T | 3791287-G-T | ** | ||||||
3758631-T-G | 3890590-T-G | ** | ||||||
3818027-G-T | 3949986-G-T | ** | ||||||
3890438-A-C | 4022397-A-C | ** | ||||||
3941326-G-A | 4073285-G-A | ** | ||||||
3998000-T-C | 4129959-T-C | ** | ||||||
4136533-T-G | 4268492-T-G | ** | ||||||
4138317-C-G | 4270276-C-G | ** | ||||||
4138327-G-A | 4270286-G-A | FT233535 | ** | |||||
4138439-T-G | 4270398-T-G | ** | ||||||
4138970-T-A | 4270929-T-A | ** | ||||||
4160588-C-A | 4292547-C-A | ** | ||||||
4209045-A-C | 4341004-A-C | ** | ||||||
4209060-A-C | 4341019-A-C | ** | ||||||
4212336-T-G | 4344295-T-G | ** | ||||||
4241396-C-A | 4373355-C-A | ** | ||||||
4254592-T-G | 4386551-T-G | ** | ||||||
4268475-T-C | 4400434-T-C | ** | ||||||
4346437-C-A | 4478396-C-A | ** | ||||||
4355821-T-A | 4487780-T-A | ** | ||||||
4372116-C-A | 4504075-C-A | ** | ||||||
4447669-C-G | 4579628-C-G | ** | ||||||
4561572-C-A | 4693531-C-A | ** | ||||||
4616285-G-T | 4748244-G-T | ** | ||||||
4746346-A-T | 4878305-A-T | ** | ||||||
4872596-T-A | 5004555-T-A | ** | ||||||
4888306-T-C | 5020265-T-C | ** | ||||||
4897592-C-A | 5029551-C-A | ** | ||||||
4898638-C-A | 5030597-C-A | ** | ||||||
4900281-C-A | 5032240-C-A | ** | ||||||
4902323-T-C | 5034282-T-C | ** | ||||||
4915834-A-G | 5047793-A-G | ** | ||||||
4919648-T-G | 5051607-T-G | ** | ||||||
4930462-C-A | 5062421-C-A | ** | ||||||
5000609-A-T | 5132568-A-T | ** | ||||||
5063080-C-A | 5195039-C-A | ** | ||||||
5625380-A-T | 5757339-A-T | ** | ||||||
5644611-C-A | 5776570-C-A | ** | ||||||
5709930-T-C | 5841889-T-C | FT108966 | ** | |||||
5721060-A-G | 5853019-A-G | ** | ||||||
5768942-A-T | 5900901-A-T | ** | ||||||
5829678-A-G | 5961637-A-G | ** | ||||||
5867372-C-A | 5999331-C-A | ** | ||||||
5966975-G-T | 6098934-G-T | ** | ||||||
5968991-C-A | 6100950-C-A | ** | ||||||
5990375-A-C | 6122334-A-C | ** | ||||||
5990555-A-G | 6122514-A-G | ** | ||||||
6064123-C-A | 6196082-C-A | ** | ||||||
6083365-G-T | 6215324-G-T | ** | ||||||
6086088-C-A | 6218047-C-A | ** | ||||||
6147550-G-T | 6279509-G-T | IR3_Dst | ** | |||||
6254915-G-A | 6386874-G-A | IR3_Dst | ** | |||||
6254934-C-G | 6386893-C-G | IR3_Dst | ** | |||||
6254946-C-A | 6386905-C-A | IR3_Dst | ** | |||||
6254964-T-G | 6386923-T-G | IR3_Dst | ** | |||||
6356125-G-T | 6488084-G-T | ** | ||||||
6444836-CTATATATA-C | 6576795-CTATATATA-C | 12×TA | ** | |||||
6712673-T-C | 6844632-T-C | FT137096 | ** | |||||
6730596-T-A | 6862555-T-A | ** | ||||||
6827660-C-A | 6959619-C-A | ** | ||||||
6977062-T-C | 7109021-T-C | ** | ||||||
7062725-C-CT | 7194684-C-CT | ** | ||||||
7087891-C-A | 7219850-C-A | ** | ||||||
7090803-A-C | 7222762-A-C | ** | ||||||
7143259-T-G | 7275218-T-G | ** | ||||||
7223111-C-A | 7355070-C-A | ** | ||||||
7239537-T-G | 7371496-T-G | ** | ||||||
7254821-C-A | 7386780-C-A | ** | ||||||
7724170-A-C | 7856129-A-C | ** | ||||||
7873931-A-T | 8005890-A-T | ** | ||||||
7939363-C-A | 8071322-C-A | ** | ||||||
7964814-G-T | 8096773-G-T | ** | ||||||
7970056-C-A | 8102015-C-A | ** | ||||||
8166824-C-A | 8298783-C-A | ** | ||||||
8167875-C-G | 8299834-C-G | ** | ||||||
8178915-C-A | 8310874-C-A | ** | ||||||
8344333-G-A | 8476292-G-A | ** | ||||||
8698905-G-A | 8830864-G-A | ** | ||||||
8731144-C-A | 8863103-C-A | ** | ||||||
8816416-C-A | 8948375-C-A | ** | ||||||
8816463-G-T | 8948422-G-T | ** | ||||||
9108614-GA-G | ** | |||||||
9075994-A-C | 9238385-A-C | ** | ||||||
9371319-T-C | 9533710-T-C | ** | ||||||
9887579-C-A | 10049970-C-A | ** | ||||||
9887672-C-A | 10050063-C-A | ** | ||||||
9933960-T-G | 10096351-T-G | ** | ||||||
9940113-G-T | 10102504-G-T | ** | ||||||
9943493-C-A | 10105884-C-A | ** | ||||||
9969558-T-G | 10131949-T-G | ** | ||||||
10014068-G-A | 10176459-G-A | ** | ||||||
10018312-T-G | 10180703-T-G | ** | ||||||
10033234-C-G | 10195625-C-G | ** | ||||||
10051343-A-C | 10213734-A-C | ** | ||||||
10060769-C-A | 10223160-C-A | ** | ||||||
10653429-T-G | ** | |||||||
10660588-C-A | ** | |||||||
10661574-T-TATTTC | ** | |||||||
10663602-C-A | ** | |||||||
10667938-C-A | ** | |||||||
10673176-A-G | ** | |||||||
10679622-C-A | ** | |||||||
10752928-C-T | ** | |||||||
10755381-C-T | ** | |||||||
10755438-A-T | ** | |||||||
10756699-C-T | ** | |||||||
10756709-C-T | ** | |||||||
10757025-C-T | ** | |||||||
10757035-T-C | ** | |||||||
10757051-A-C | ** | |||||||
10757137-C-T | ** | |||||||
10761381-T-C | ** | |||||||
10772829-C-A | FT430552 | ** | ||||||
10796212-C-A | ** | |||||||
10797779-C-CACCAT | ** | |||||||
10797792-T-A | ** | |||||||
10800908-T-A | ** | |||||||
10800913-TCCACC-T | ** | |||||||
10813459-C-A | ** | |||||||
10814970-A-G | ** | |||||||
10820747-T-A | ** | |||||||
10835371-C-A | ** | |||||||
10839594-T-C | ** | |||||||
10848899-T-C | ** | |||||||
10848901-C-T | ** | |||||||
10848909-T-C | ** | |||||||
10848916-C-A | ** | |||||||
10848922-T-A | ** | |||||||
10848926-C-T | ** | |||||||
10848929-T-C | ** | |||||||
10848933-A-G | ** | |||||||
10848941-C-T | ** | |||||||
10849695-C-T | ** | |||||||
10859506-A-T | ** | |||||||
10866003-A-T | ** | |||||||
10866004-T-A | ** | |||||||
10866009-T-C | ** | |||||||
10866052-C-T | ** | |||||||
10888654-A-C | ** | |||||||
10889532-C-A | ** | |||||||
10892338-A-T | ** | |||||||
10899312-C-A | ** | |||||||
10906084-G-T | FT436128 | ** | ||||||
10923759-C-A | ** | |||||||
10923801-C-A | ** | |||||||
10930180-A-G | ** | |||||||
10930271-C-A | ** | |||||||
10936637-C-A | ** | |||||||
10942357-C-T | ** | |||||||
10964090-T-G | ** | |||||||
10970900-C-A | ** | |||||||
10971423-A-G | ** | |||||||
10980105-C-A | ** | |||||||
10983363-C-A | ** | |||||||
10990257-C-A | ** | |||||||
10999662-T-A | ** | |||||||
11003252-T-G | ** | |||||||
11007601-C-T | ** | |||||||
11009312-C-A | ** | |||||||
11021554-T-C | ** | |||||||
11021556-C-A | ** | |||||||
11021559-C-A | ** | |||||||
11025480-T-C | ** | |||||||
11037303-CCCATT-C | ** | |||||||
11038082-C-G | ** | |||||||
13198911-G-T | 11043235-G-T | ** | ||||||
13251566-A-T | 11095890-A-T | ** | ||||||
13299397-A-C | 11143721-A-C | ** | ||||||
13299414-T-C | 11143738-T-C | ** | ||||||
13299439-T-C | 11143763-T-C | ** | ||||||
13401880-C-A | 11246204-C-A | ** | ||||||
13557771-A-G | 11402095-A-G | ** | ||||||
13582983-C-T | 11427307-C-T | ** | ||||||
13604310-T-C | 11448634-T-C | ** | ||||||
13604323-C-A | 11448647-C-A | ** | ||||||
11658454-A-G | ** | |||||||
11659989-A-G | ** | |||||||
11671606-T-A | ** | |||||||
13881323-T-C | 11760617-T-C | ** | ||||||
13884547-G-A | 11763841-G-A | ** | ||||||
13891669-C-A | 11770963-C-A | ** | ||||||
13919954-C-A | 11799248-C-A | ** | ||||||
13920030-C-A | 11799324-C-A | ** | ||||||
13922676-A-G | 11801970-A-G | ** | ||||||
13933348-A-T | 11812642-A-T | ** | ||||||
13938709-C-G | 11818003-C-G | ** | ||||||
13942418-C-A | 11821712-C-A | ** | ||||||
14034018-T-C | 11913312-T-C | A19098 | ** | |||||
14047760-A-G | 11927054-A-G | ** | ||||||
14088924-T-C | 11968218-T-C | ** | ||||||
14115017-T-C | 11994311-T-C | ** | ||||||
14134910-A-C | 12014204-A-C | ** | ||||||
14174798-T-A | 12054092-T-A | ** | ||||||
14213158-A-G | 12092452-A-G | FT57806 | ** | |||||
14283999-A-G | 12163293-A-G | ** | ||||||
14311906-C-A | 12191200-C-A | ** | ||||||
14367812-A-C | 12247108-A-C | ** | ||||||
14377664-GT-G | 12256960-GT-G | ** | ||||||
14384374-G-T | 12263670-G-T | ** | ||||||
14422347-G-T | 12301622-G-T | ** | ||||||
14432114-A-C | 12311387-A-C | ** | ||||||
14432120-A-T | 12311393-A-T | ** | ||||||
14472972-C-A | 12352241-C-A | FT76278 | ** | |||||
14507721-G-A | 12395926-G-A | ** | ||||||
14514006-A-G | 12402211-A-G | ** | ||||||
14517259-C-A | 12405460-C-A | ** | ||||||
14549200-C-A | 12437401-C-A | ** | ||||||
14558505-C-A | 12446706-C-A | ** | ||||||
14668309-C-A | 12556375-C-A | ** | ||||||
14712470-C-T | 12600537-C-T | ** | ||||||
15103557-G-A | 12991645-G-A | ** | ||||||
15281780-T-A | 13169879-T-A | ** | ||||||
15402811-A-T | 13290931-A-T | ** | ||||||
15424558-G-C | 13312678-G-C | ** | ||||||
15424602-A-C | 13312722-A-C | ** | ||||||
15687752-C-A | 13575872-C-A | ** | ||||||
15688196-T-A | 13576316-T-A | ** | ||||||
15688213-C-G | 13576333-C-G | ** | ||||||
15740872-C-T | 13628992-C-T | ** | ||||||
15769240-C-A | 13657360-C-A | ** | ||||||
15893595-G-T | 13781715-G-T | ** | ||||||
16007176-C-A | 13895296-C-A | ** | ||||||
16021788-C-T | 13909908-C-T | A19116 | ** | |||||
16034386-G-T | 13922506-G-T | ** | ||||||
16055965-C-A | 13944085-C-A | ** | ||||||
16116394-A-C | 14004514-A-C | P8_Prx | ** | |||||
16244999-C-A | 14133119-C-A | ** | ||||||
16245316-C-A | 14133436-C-A | ** | ||||||
16342486-A-G | 14230606-A-G | ** | ||||||
16353980-A-G | 14242100-A-G | ** | ||||||
16394456-A-C | 14282576-A-C | ** | ||||||
16421276-G-A | 14309396-G-A | FT229115 | ** | |||||
16480574-C-A | 14368694-C-A | ** | ||||||
16480602-T-A | 14368722-T-A | ** | ||||||
16480643-T-G | 14368763-T-G | ** | ||||||
16480793-C-A | 14368913-C-A | ** | ||||||
16503425-T-G | 14391545-T-G | ** | ||||||
16865252-C-T | 14753372-C-T | Y4952 | ** | |||||
17014531-C-A | 14902651-C-A | ** | ||||||
17061927-G-A | 14950047-G-A | ** | ||||||
17064958-C-A | 14953078-C-A | ** | ||||||
17085654-C-A | 14973774-C-A | ** | ||||||
17093356-CATAT-C | 14981476-CATAT-C | ** | ||||||
17143978-G-A | 15032098-G-A | ** | ||||||
17143989-A-G | 15032109-A-G | ** | ||||||
17144019-C-A | 15032139-C-A | ** | ||||||
17144054-G-A | 15032174-G-A | ** | ||||||
17144056-C-A | 15032176-C-A | ** | ||||||
17144066-G-A | 15032186-G-A | ** | ||||||
17144070-G-A | 15032190-G-A | ** | ||||||
17181705-C-A | 15069825-C-A | ** | ||||||
17267770-C-T | 15155890-C-T | ** | ||||||
17343536-T-G | 15231656-T-G | ** | ||||||
17455569-C-A | 15343689-C-A | ** | ||||||
17478881-C-A | 15367001-C-A | ** | ||||||
17500559-T-C | 15388679-T-C | ** | ||||||
17539008-A-T | 15427128-A-T | A19124 | ** | |||||
17629725-T-C | 15517845-T-C | ** | ||||||
17728421-C-A | 15616541-C-A | ** | ||||||
17739989-C-A | 15628109-C-A | ** | ||||||
17783539-C-A | 15671659-C-A | A19128 | ** | |||||
17850057-C-A | 15738177-C-A | YFC163694 A19309 | ** | |||||
17854535-C-A | 15742655-C-A | ** | ||||||
17858948-A-G | 15747068-A-G | ** | ||||||
17859068-T-G | 15747188-T-G | ** | ||||||
17929554-A-C | 15817674-A-C | ** | ||||||
18192367-T-C | 16080487-T-C | ** | ||||||
18406990-C-A | 16295110-C-A | P6_Gap | ** | |||||
18454963-CT-C | 16343083-CT-C | P6_Dst | ** | |||||
18531060-G-T | 16419180-G-T | P6_Dst | ** | |||||
18579237-A-G | 16467357-A-G | ** | ||||||
18626306-G-T | 16514426-G-T | ** | ||||||
18626333-G-T | 16514453-G-T | ** | ||||||
18747040-C-A | 16635160-C-A | ** | ||||||
18766967-C-A | 16655087-C-A | ** | ||||||
18848049-C-A | 16736169-C-A | ** | ||||||
18874731-G-T | 16762851-G-T | A19134 | ** | |||||
18891018-C-G | 16779138-C-G | ** | ||||||
18905138-C-A | 16793258-C-A | ** | ||||||
19020063-C-A | 16908183-C-A | ** | ||||||
19125626-C-T | 17013746-C-T | ** | ||||||
19125631-C-G | 17013751-C-G | ** | ||||||
19125635-C-A | 17013755-C-A | ** | ||||||
19125636-A-G | 17013756-A-G | ** | ||||||
19202886-C-T | 17091006-C-T | ** | ||||||
19304039-A-C | 17192159-A-C | ** | ||||||
19353544-G-T | 17241664-G-T | ** | ||||||
19509935-A-C | 17398055-A-C | ** | ||||||
19532629-C-T | 17420749-C-T | ** | ||||||
19605011-G-T | 17493131-G-T | P5_Prx | ** | |||||
19829300-T-C | 17717420-T-C | P5_Prx | ** | |||||
20128613-T-C | 18016733-T-C | P5_Dst | ** | |||||
20255125-T-G | 18093239-T-G | P5_Dst | ** | |||||
20770486-T-TCA | 18608600-T-TCA | P4_Prx | ** | |||||
20865587-C-T | 18703701-C-T | P4_Dst | ** | |||||
21054376-T-A | 18892490-T-A | ** | ||||||
21151678-C-A | 18989792-C-A | ** | ||||||
21220944-C-A | 19059058-C-A | ** | ||||||
21320196-C-A | 19158310-C-A | ** | ||||||
21325596-C-T | 19163710-C-T | ** | ||||||
21325673-C-G | 19163787-C-G | ** | ||||||
21367598-C-A | 19205712-C-A | ** | ||||||
21367650-C-A | 19205764-C-A | ** | ||||||
21371179-A-G | 19209293-A-G | ** | ||||||
21450570-T-C | 19288684-T-C | ** | ||||||
21450594-C-G | 19288708-C-G | ** | ||||||
21589502-C-A | 19427616-C-A | ** | ||||||
21691954-T-C | 19530068-T-C | ** | ||||||
21823149-T-C | 19661263-T-C | ** | ||||||
21862140-C-T | 19700254-C-T | Y57302 | ** | |||||
22063948-C-A | 19902062-C-A | ** | ||||||
22080525-T-C | 19918639-T-C | ** | ||||||
22089884-T-C | 19927998-T-C | ** | ||||||
22135175-A-G | 19973289-A-G | ** | ||||||
22164442-G-T | 20002556-G-T | ** | ||||||
22168880-C-T | 20006994-C-T | ** | ||||||
22205160-C-A | 20043274-C-A | ** | ||||||
22218855-T-G | 20056969-T-G | DYZ19 | ** | |||||
22295291-C-T | 20133405-C-T | DYZ19 | ** | |||||
22318369-C-A | 20156483-C-A | DYZ19 | ** | |||||
22318392-A-C | 20156506-A-C | DYZ19 | ** | |||||
22808957-C-T | 20647071-C-T | ** | ||||||
22820330-G-A | 20658444-G-A | ** | ||||||
22970183-C-A | 20808297-C-A | ** | ||||||
22983948-T-G | 20822062-T-G | ** | ||||||
22991143-G-T | 20829257-G-T | ** | ||||||
23019653-C-A | 20857767-C-A | ** | ||||||
23062228-C-A | 20900342-C-A | ** | ||||||
23425252-A-T | 21263366-A-T | ** | ||||||
23425351-A-T | 21263465-A-T | ** | ||||||
23435904-T-C | 21274018-T-C | ** | ||||||
23460486-G-A | 21298600-G-A | ** | ||||||
23563821-A-C | 21401935-A-C | ** | ||||||
24283312-C-G | 22137165-C-G | P3_t1 | ** | |||||
24513705-C-A | 22367558-C-A | ** | ||||||
25537119-T-TC | 23390972-T-TC | P1_gr1 | ** | |||||
25993890-T-A | 23847743-T-A | P1_Y1 | ** | |||||
26026479-AT-A | 23880332-AT-A | P1_Y1 | ** | |||||
26122895-T-C | 23976748-T-C | P1_Y1 | ** | |||||
26146766-A-G | 24000619-A-G | P1_Y1 | ** | |||||
26355513-C-A | 24209366-C-A | P1_Y1 | ** | |||||
26376442-T-A | 24230295-T-A | P1_Y1 | ** | |||||
27714032-T-TA | 25567885-T-TA | P1_Y2 | ** | |||||
27837978-GTTT-G | 25691831-GTTT-G | P1_Y2 | 29×T | ** | ||||
27861555-A-G | 25715408-A-G | P1_Y2 | ** | |||||
27877399-C-A | 25731252-C-A | P1_Y2 | ** | |||||
28159327-A-T | 26013180-A-T | P1_b4 | ** | |||||
28429559-T-G | 26283412-T-G | P1_gr2 | ** | |||||
28482927-G-A | 26336780-G-A | ** | ||||||
28482940-A-G | 26336793-A-G | ** | ||||||
28516532-C-A | 26370385-C-A | ** | ||||||
28516635-C-A | 26370488-C-A | ** | ||||||
28529558-C-A | 26383411-C-A | ** | ||||||
28537018-C-G | 26390871-C-G | ** | ||||||
28570641-C-A | 26424494-C-A | ** | ||||||
28581284-G-C | 26435137-G-C | ** | ||||||
28581294-A-C | 26435147-A-C | ** | ||||||
28581376-G-C | 26435229-G-C | ** | ||||||
28613595-T-A | 26467448-T-A | ** | ||||||
28613624-A-C | 26467477-A-C | ** | ||||||
28636349-T-A | 26490202-T-A | ** | ||||||
28665298-C-A | 26519151-C-A | ** | ||||||
28689307-A-T | 26543160-A-T | ** | ||||||
28698887-T-C | 26552740-T-C | ** | ||||||
28698946-T-A | 26552799-T-A | ** | ||||||
28698959-A-C | 26552812-A-C | ** | ||||||
28698969-A-C | 26552822-A-C | ** | ||||||
28699019-T-C | 26552872-T-C | ** | ||||||
28726822-T-A | 26580675-T-A | ** | ||||||
28734797-C-A | 26588650-C-A | ** | ||||||
28759607-C-A | 26613460-C-A | ** | ||||||
28765150-A-G | 26619003-A-G | ** | ||||||
28806294-C-T | 26660147-C-T | ** | ||||||
28812455-A-C | 26666308-A-C | ** | ||||||
28812475-A-T | 26666328-A-T | ** | ||||||
28812491-T-C | 26666344-T-C | ** | ||||||
56822426-G-T | ** | |||||||
56848915-A-T | ** | |||||||
9353202-A-G | 9515593-A-G | *** | ||||||
13936205-G-GAAGAAAGAAAGAAAGAAAGA | 11815499-G-GAAGAAAGAAAGAAAGAAAGA | 14×AAGA | *** | |||||
13234321-C-A | 11078645-C-A | *** | ||||||
10746953-C-T | *** | |||||||
10746965-TTCAAC-T | *** | |||||||
17030588-CTTTT-C | 14918708-CTTTT-C | 16×T | *** | |||||
10678131-C-A | *** | |||||||
2888736-T-G | 3020695-T-G | FT178647 | *** | |||||
10869969-T-C | *** | |||||||
10686523-C-T | *** | |||||||
14036143-A-T | 11915437-A-T | *** | ||||||
14036147-T-C | 11915441-T-C | *** | ||||||
10686529-T-C | *** | |||||||
10686495-T-TG | *** | |||||||
10686497-T-A | *** | |||||||
14226550-C-A | 12105844-C-A | *** | ||||||
10746984-A-T | *** | |||||||
56884424-TTT-A,AAT | *** | |||||||
16003010-G-T | 13891130-G-T | *** | ||||||
5231124-A-G | 5363083-A-G | *** | ||||||
6346021-GTTT-G | 6477980-GTTT-G | 12×T | *** | |||||
7018027-ATT-A,ATTT | 7149986-ATT-A,ATTT | 24×T | *** | |||||
7195307-CAAAAAAA-C | 7327266-CAAAAAAA-C | 16×A | *** | |||||
8501689-CTCTTCTTCT-C,CTCTTCT | 8633648-CTCTTCTTCT-C,CTCTTCT | 18×TCT | *** | |||||
8974392-C-A | 9136783-C-A | *** | ||||||
9173351-C-A | 9335742-C-A | *** | ||||||
9371457-CATATATATATATATATATATATATAT-C | 9533848-CATATATATATATATATATATATATAT-C | 22×AT | *** | |||||
10653993-C-A | *** | |||||||
10678682-C-T | *** | |||||||
10746937-C-T | *** | |||||||
10755371-C-G | *** | |||||||
10831493-T-A | *** | |||||||
14914670-TTC-T | 12802737-TTC-T | *** | ||||||
16320318-A-G | 14208438-A-G | *** | ||||||
18191323-C-A | 16079443-C-A | *** | ||||||
18848484-T-C | 16736604-T-C | *** | ||||||
21109998-A-G | 18948112-A-G | *** | ||||||
56828309-AAATCA-A,AATTCT | *** | |||||||
56844146-C-A | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.