Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > Z195/S355 > Z272 > S450 > ZZ40 > FGC23342 > FGC23344

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
25972132-G-A 23825985-G-A P1_Y1 +
26658105-T-C 24511958-T-C P1_g2 +
26262523-T-C 24116376-T-C P1_Y1 **
26024841-G-C 23878694-G-C GG046 P1_Y1 **
7258755-C-CAAAAAAAAA 7390714-C-CAAAAAAAAA 25×A**
23729950-T-C 21568064-T-C **
25678192-G-A 23532045-G-A P1_b3 ***
25678197-C-A 23532050-C-A P1_b3 ***
25678151-G-A 23532004-G-A P1_b3 ***
25678150-T-A 23532003-T-A P1_b3 ***
25719214-C-T 23573067-C-T P1_b3 ***
25985761-G-T 23839614-G-T P1_Y1 ***
26122000-A-T 23975853-A-T P1_Y1 18×T***
26260551-C-A 24114404-C-A P1_Y1 ***
25534104-C-A 23387957-C-A P1_gr1 ***
26344282-G-A 24198135-G-A P1_Y1 ***
24673177-A-G 22527030-A-G P3_b2 ***
26371734-A-T 24225587-A-T P1_Y1 ***
13467139-A-T 11311463-A-T ***
26371738-T-C 24225591-T-C P1_Y1 ***
26371776-G-A 24225629-G-A P1_Y1 ***
26834579-A-G 24688432-A-G P1_g2 ***
26996136-G-T 24849989-G-T P1_r4 ***
27158049-A-G 25011902-A-G P1_g3 ***
27162040-T-C 25015893-T-C P1_g3 ***
27186344-A-T 25040197-A-T P1_g3 ***
27636965-C-G 25490818-C-G P1_Y2 ***
27990255-C-T 25844108-C-T P1_Y2 ***
28033231-A-T 25887084-A-T P1_Y2 ***
28046098-C-A 25899951-C-A P1_Y2 ***
58843592-G-A 56747279-C-T ***
58846173-G-T 56744698-C-A ***
26391504-C-A 24245357-C-A P1_Y1 ***
24309338-G-A 22163191-G-A P3_t1 ***
24309367-T-A 22163220-T-A P3_t1 ***
22364791-C-T 20202905-C-T DYZ19 ***
22330453-G-T 20168567-G-T DYZ19 ***
22332893-A-T 20171007-A-T DYZ19 ***
22335734-G-T 20173848-G-T DYZ19 ***
22337196-T-G 20175310-T-G DYZ19 ***
22337427-G-T 20175541-G-T DYZ19 ***
22337609-T-A 20175723-T-A DYZ19 ***
22342545-T-C 20180659-T-C DYZ19 ***
22343220-G-A 20181334-G-A DYZ19 ***
22354278-G-A 20192392-G-A DYZ19 ***
22355031-G-T 20193145-G-T DYZ19 ***
22356079-A-T 20194193-A-T DYZ19 ***
22356163-T-G 20194277-T-G DYZ19 ***
22356884-T-A 20194998-T-A DYZ19 ***
22361129-A-T 20199243-A-T DYZ19 ***
22364916-C-T 20203030-C-T DYZ19 ***
58877071-A-T 56713800-T-A ***
22365776-G-T 20203890-G-T DYZ19 ***
22366550-G-T 20204664-G-T DYZ19 ***
22366975-A-T 20205089-A-T DYZ19 ***
22420877-A-G 20258991-A-G DYZ19 ***
22457166-C-T 20295280-C-T DYZ19 ***
22480685-G-T 20318799-G-T DYZ19 ***
22480689-C-A 20318803-C-A DYZ19 ***
22480703-G-T 20318817-G-T DYZ19 ***
22491854-A-G 20329968-A-G DYZ19 ***
22501963-G-A 20340077-G-A DYZ19 ***
22502727-T-A 20340841-T-A DYZ19 ***
23694963-G-A 21533077-G-A ***
23729924-T-C 21568038-T-C ***
23729940-G-A 21568054-G-A ***
58870680-T-G 56720191-A-C ***
58881942-C-T 56708929-G-A ***
58879338-A-C 56711533-T-G ***
23729930-AGTGT-GGCA 21568044-AGTGT-GGCA ***
22356064-G-CAAGA 20194178-G-CAAGA DYZ19 ***
22356131-TTCCA-GTCCT 20194245-TTCCA-GTCCT DYZ19 ***
22356142-GTGTAT-ATGTCC 20194256-GTGTAT-ATGTCC DYZ19 ***
22360572-CAATG-GAATT 20198686-CAATG-GAATT DYZ19 ***
22366946-GAA-CAG 20205060-GAA-CAG DYZ19 ***
22366964-CCTTC-ACTTA 20205078-CCTTC-ACTTA DYZ19 ***
22491364-GG-AA 20329478-GG-AA DYZ19 ***
22491371-GT-TC 20329485-GT-TC DYZ19 ***
22504609-CAGA-TAGG 20342723-CAGA-TAGG DYZ19 ***
22504673-AGTGT-CCTGG 20342787-AGTGT-CCTGG DYZ19 ***
22949878-C-CTTTT 20787992-C-CTTTT 23×T***
23223305-TCC-AAA 21061419-TCC-AAA ***
24207530-CTT-C 22061383-CTT-C P3_b1 14×T***
22330199-TTCT-GTCC 20168313-TTCT-GTCC DYZ19 ***
24446851-AAATAT-A 22300704-AAATAT-A ***
25080053-C-CAAAAAAAAA 22933906-C-CAAAAAAAAA g1 20×A***
26260636-ATTT-A 24114489-ATTT-A P1_Y1 11×T***
26526564-A-AT 24380417-A-AT P1_Y1 ***
28804549-AACT-GATC 26658402-AACT-GATC ***
58831533-AATCCT-A 56759332-AAGGAT-A ***
58898683-TG-AT 56692187-CA-AT ***
22272934-CTTTAG-C 20111048-CTTTAG-C DYZ19 ***
58879350-C-G 56711521-G-C ***
4778178-CA-C 4910137-CA-C 15×A***
22284722-C-A 20122836-C-A DYZ19 ***
58903236-C-T 56687635-G-A ***
58904115-A-G 56686756-T-C ***
58906473-C-T 56684398-G-A ***
58908494-A-T 56682377-T-A ***
58908497-T-A 56682374-A-T ***
58908510-C-A 56682361-G-T ***
58910560-A-C 56680311-T-G ***
58914170-C-T 56676701-G-A ***
18743590-CTATCTAT-C 16631710-CTATCTAT-C ***
5400870-C-CT 5532829-C-CT 21×T***
13120533-TG-AA 10610019-TG-AA ***
3404731-GA-G 3536690-GA-G 11×A***
8776547-C-CATATTTTTTT 8908506-C-CATATTTTTTT 24×T***
8901991-C-CTTTT 9033950-C-CTTTT 19×T***
13120523-CTC-AAG 10610009-CTC-AAG ***
13257285-ATATA-TTTTT 11101609-ATATA-TTTTT ***
13463867-GA-AG 11308191-GA-AG ***
17872639-CTTTTTT-C 15760759-CTTTTTT-C 17×T***
17919855-G-GAAAAAAAAA 15807975-G-GAAAAAAAAA 25×A***
18447621-G-GTTTTTTTTTTGT 16335741-G-GTTTTTTTTTTGT P6_Dst 18×T***
19664951-A-AG 17553071-A-AG P5_Prx ***
19664953-C-CTT 17553073-C-CTT P5_Prx ***
21086136-T-TAAA 18924250-T-TAAA 24×A***
21569958-T-TAAAAAAA 19408072-T-TAAAAAAA 46×A***
22245738-C-CTCTTAAAG 20083852-C-CTCTTAAAG DYZ19 ***
22309237-C-A 20147351-C-A DYZ19 ***
22248707-G-C 20086821-G-C DYZ19 ***
22273629-C-A 20111743-C-A DYZ19 ***
19669318-T-C 17557438-T-C P5_Prx ***
58863512-T-G 56727359-A-C ***
22327478-C-A 20165592-C-A DYZ19 ***
26260620-G-C 24114473-G-C P1_Y1 ***
26260678-G-A 24114531-G-A P1_Y1 ***
58837520-C-T 56753351-G-A 9×CCATT***
26260657-CAGCTC-TAACTT 24114510-CAGCTC-TAACTT P1_Y1 ***
13120504-C-T 10609990-C-T ***
26507919-A-T 24361772-A-T P1_Y1 ***
6493140-C-CA 6625099-C-CA 10×A***
13120501-TTTCAC-GTTTAA 10609987-TTTCAC-GTTTAA ***
22337180-G-T 20175294-G-T DYZ19 ***
22225814-A-G 20063928-A-G DYZ19 ***
13931735-CTTTC-TTTTT 11811029-CTTTC-TTTTT ***
22249783-C-A 20087897-C-A DYZ19 ***
22268822-T-G 20106936-T-G DYZ19 ***
22276898-A-G 20115012-A-G DYZ19 ***
22277567-TC-T 20115681-TC-T DYZ19 ***
22298591-G-C 20136705-G-C DYZ19 ***
22313226-C-T 20151340-C-T DYZ19 ***
22426194-AG-A 20264308-AG-A DYZ19 ***
25323561-A-G 23177414-A-G P2_r1 ***
22235029-A-G 20073143-A-G DYZ19 ***
58877046-A-T 56713825-T-A ***
18332759-G-T 16220879-G-T P6_Prx ***
13716356-G-T 11560680-G-T ***
22457145-T-G 20295259-T-G DYZ19 ***
13486189-T-G 11330513-T-G ***
22367198-CTAATT-AGAATG 20205312-CTAATT-AGAATG DYZ19 ***
58913084-G-A 56677787-C-T ***
20544039-G-A 18382153-G-A P5_Dst ***
13483759-TGACT-AGATA 11328083-TGACT-AGATA ***
13734106-G-A 11578430-G-A ***
22309406-A-T 20147520-A-T DYZ19 ***
22504654-G-C 20342768-G-C DYZ19 ***
58843776-GTA-ATT 56747093-TAC-AAT ***
22361353-T-A 20199467-T-A DYZ19 ***
13120501-T-G 10609987-T-G ***
58839815-C-T 56751056-G-A ***
5191228-C-CTTTTTT 5323187-C-CTTTTTT 27×T***
13120472-TG-AC 10609958-TG-AC ***
19126436-C-CAAAAAAA 17014556-C-CAAAAAAA 25×A***
19937298-ACCCGCT-CCCCCCC 17825418-ACCCGCT-CCCCCCC P5_Prx ***
20544027-G-A 18382141-G-A P5_Dst ***
20544069-C-T 18382183-C-T P5_Dst ***
13445374-AA-G 11289698-AA-G ***
13603629-ATT-A 11447953-ATT-A 15×T***
20252796-C-CAAAAAAA 18090910-C-CAAAAAAA P5_Dst 24×A***
22265800-T-G 20103914-T-G DYZ19 ***
22364706-G-T 20202820-G-T DYZ19 ***
22251518-AA-CT 20089632-AA-CT DYZ19 ***
22234963-C-A 20073077-C-A DYZ19 ***
22491867-G-T 20329981-G-T DYZ19 ***
58874684-A-C 56716187-T-G ***
58879298-G-A 56711573-C-T ***
58882513-C-A 56708358-G-T ***
22367251-G-C 20205365-G-C DYZ19 ***
58843845-G-C 56747026-C-G ***
58879788-C-T 56711083-G-A ***
22267339-T-C 20105453-T-C DYZ19 ***
18478494-A-C 16366614-A-C P6_Dst ***
13360158-T-C 11204482-T-C ***
13481827-G-A 11326151-G-A ***
13531887-C-T 11376211-C-T ***
13698523-G-A 11542847-G-A ***
13716351-A-T 11560675-A-T ***
13728199-G-T 11572523-G-T ***
14088083-T-A 11967377-T-A ***
15248019-G-A 13136105-G-A ***
16868726-G-T 14756846-G-T ***
16868733-T-A 14756853-T-A ***
16868749-A-T 14756869-A-T ***
16868757-A-T 14756877-A-T ***
18332632-G-T 16220752-G-T P6_Prx ***
18478520-C-T 16366640-C-T P6_Dst ***
13120099-G-A 10609585-G-A ***
19664923-G-T 17553043-G-T P5_Prx ***
19664949-G-C 17553069-G-C P5_Prx ***
19699626-G-A 17587746-G-A P5_Prx ***
19699666-C-T 17587786-C-T P5_Prx ***
19699667-C-T 17587787-C-T P5_Prx ***
19706654-C-T 17594774-C-T P5_Prx ***
19778797-G-T 17666917-G-T P5_Prx ***
19915853-G-T 17803973-G-T P5_Prx ***
20060782-C-A 17948902-C-A P5_Prx ***
20955886-C-A 18794000-C-A P4_Dst ***
20989196-A-C 18827310-A-C P4_Dst ***
22234444-A-T 20072558-A-T DYZ19 ***
58835766-GCATTC-G 56755075-AAATGG-A 5×CATTC***
13120525-C-G 10610011-C-G ***
13120091-G-A 10609577-G-A ***
13110851-T-G 10600337-T-G ***
58917513-T-G 56673358-A-C ***
58868012-G-C 56722859-C-G ***
13110866-TATG-ACTT 10600352-TATG-ACTT ***
13110880-GCC-TCA 10600366-GCC-TCA ***
22352870-ACA-CCT 20190984-ACA-CCT DYZ19 ***
22355125-C-T 20193239-C-T DYZ19 ***
22366563-G-T 20204677-G-T DYZ19 ***
19187385-A-ATTT 17075505-A-ATTT 28×T***
22234338-G-C 20072452-G-C DYZ19 ***
22337194-T-A 20175308-T-A DYZ19 ***
23729951-T-C 21568065-T-C PF1911 ***
13120050-A-T 10609536-A-T ***
26707411-C-T 24561264-C-T P1_g2 ***
23729952-G-A 21568066-G-A Z25534 ***
13468606-G-A 11312930-G-A ***
13110907-T-C 10600393-T-C ***
22354299-G-A 20192413-G-A DYZ19 ***
26344352-C-T 24198205-C-T P1_Y1 ***
22355017-G-A 20193131-G-A DYZ19 ***
26376705-G-A 24230558-G-A P1_Y1 ***
22480658-A-T 20318772-A-T DYZ19 ***
3313964-T-C 3445923-T-C ***
3350534-G-A 3482493-G-A ***
4820735-C-G 4952694-C-G ***
4821910-C-T 4953869-C-T ***
6195025-G-T 6326984-G-T IR3_Dst ***
6195051-G-T 6327010-G-T IR3_Dst ***
6359015-G-A 6490974-G-A ***
7142286-C-T 7274245-C-T ***
13109582-C-A 10599068-C-A ***
59013640-TTTTTTTT-A 56867493-TTTTTTTT-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

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