Coker

BigY2: 191764
MDKA Birth: United States

Tree Position

R-P312/S116 > DF19/S232 > Exact position not yet finalized.

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
191764
22231559-C-T 20069673-C-T DYZ19 A*
22454642-C-CA 20292756-C-CA DYZ19 A*
6337795-T-TGTGA 6469754-T-TGTGA IR3_Dst A*
6331507-A-G 6463466-A-G IR3_Dst A*
19835989-C-T 17724109-C-T P5_Prx A*
28817549-G-C 26671402-G-C A*
18353251-T-G 16241371-T-G P6_Prx A*
22310131-T-A 20148245-T-A DYZ19 A*
28497611-G-T 26351464-G-T Z39409 Y+
8332182-A-G 8464141-A-G Y86497 YY+
15750502-CTTTTTTT-C 13638622-CTTTTTTT-C 18×T+
13834001-AGAATGTATTTGAATG-A 11713295-AGAATGTATTTGAATG-A +
13871044-T-C 11750338-T-C Y+
15704736-A-C 13592856-A-C Z39396 YY+
9147412-C-T 9309803-C-T Z39388 Y+
22846430-A-G 20684544-A-G Z39404 YY+
13822594-CATCGAATGGAATGTA-C 11701888-CATCGAATGGAATGTA-C +
16631206-C-G 14519326-C-G Z39397 YY+
14346520-A-G 12225815-A-G YY+
2806469-C-G 2938428-C-G Z39380 YY+
23739823-G-T 21577937-G-T Z39407 +
23239448-A-T 21077562-A-T Z39405 Y+
7834459-G-A 7966418-G-A Z39385 YY+
14346520-AT-A 12225815-AT-A +
7196872-T-C 7328831-T-C Z39383 YY+
8378186-C-T 8510145-C-T ZS3315 Z39386 YY+
6933392-C-T 7065351-C-T Z39381 YY+
14706731-G-A 12594797-G-A Y1208 Z39393 YY+
17872424-C-A 15760544-C-A Z39402 YY+
5976750-C-A 6108709-C-A Y4847 A3242 +
7185982-G-C 7317941-G-C Z39382 YY+
21189237-T-A 19027351-T-A Z39403 YY+
23549479-G-A 21387593-G-A Z39406 YY+
17705070-G-A 15593190-G-A Z39401 YY+
17435678-C-T 15323798-C-T Z39399 YY+
16354394-G-GT 14242514-G-GT 9×T+
17465449-G-A 15353569-G-A Z39400 YY+
7707484-AT-A 7839443-AT-A +
22443300-G-T 20281414-G-T DYZ19 *
22340819-A-G 20178933-A-G DYZ19 *
22233341-CG-C 20071455-CG-C DYZ19 *
17021226-T-TA 14909346-T-TA 9×A*
22233341-C-A 20071455-C-A DYZ19 *
26066840-C-T 23920693-C-T P1_Y1 *
28794020-A-G 26647873-A-G *
15044792-G-T 12932882-G-T **
14964452-A-G 12852527-A-G **
14960293-G-A 12848368-G-A **
11644169-A-G **
11646070-A-G **
14387832-C-A 12267128-C-A **
14798479-G-A 12686550-G-A **
11665418-T-C **
11666614-C-A **
14757901-C-A 12645970-C-A **
11673221-G-T **
11675992-A-G **
11675996-T-G **
11646450-AT-A **
11644151-A-T **
15047560-C-A 12935651-C-A **
11644148-C-G **
15103650-T-A 12991738-T-A **
11644147-A-G **
13622137-G-T 11466461-G-T **
13594687-T-A 11439011-T-A **
13594316-C-A 11438640-C-A **
13564982-A-C 11409306-A-C **
13556774-C-A 11401098-C-A **
15138113-G-A 13026200-G-A **
15172628-G-T 13060714-G-T **
15179010-C-T 13067096-C-T 25×A**
13491011-C-A 11335335-C-A **
13466169-G-T 11310493-G-T **
11675997-A-C **
14727341-T-G 12615409-T-G **
14387624-AT-A 12266920-AT-A **
13951634-A-G 11830928-A-G **
14391695-GA-G 12270991-GA-G **
14422662-C-T 12301937-C-T Y30785 **
14324486-A-G 12203780-A-G **
14281084-C-A 12160378-C-A **
14449863-G-T 12329136-G-T **
14490940-A-T 12370209-A-T **
14273748-T-G 12153042-T-G **
14240528-A-G 12119822-A-G Y30781 **
14135307-C-T 12014601-C-T **
13999331-T-C 11878625-T-C **
13323394-G-A 11167718-G-A **
12379441-G-A **
13960991-G-A 11840285-G-A **
13940628-C-A 11819922-C-A **
11676003-T-A **
13937071-C-A 11816365-C-A **
13932981-C-A 11812275-C-A **
13873644-A-G 11752938-A-G **
14510071-G-A 12398276-G-A **
14517369-T-G 12405570-T-G **
14537980-C-T 12426181-C-T **
14561499-C-T 12449700-C-T **
14593749-C-A 12481949-C-A **
14608078-A-G 12496280-A-G **
14658243-C-T 12546308-C-T **
14675200-T-G 12563266-T-G **
14717877-T-C 12605945-T-C **
14725580-G-T 12613648-G-T **
11676010-G-A **
13433611-C-A 11277935-C-A **
11004374-C-G **
13288937-A-C 11133261-A-C **
10873893-A-T **
10859290-C-A **
10862074-C-A **
10863505-C-G **
10863709-A-G **
10863712-G-A **
10863717-A-G **
10867842-C-A **
10874280-C-A **
10850525-C-A **
10879951-A-C **
10880292-C-G **
10883420-T-C **
10885400-C-A **
10885618-C-A **
10895003-T-C **
10895007-C-T **
10856931-C-A **
10846930-A-C **
10911872-C-A **
10821790-T-C **
10798806-C-A **
10805008-C-A **
10805260-A-G **
10818736-T-C **
10818738-TTCC-T **
10818745-GCT-G **
10821372-C-A **
10821791-C-G **
10846857-C-CCATTTTATTG **
10838097-T-G **
10838203-C-T **
10839934-T-A **
10839992-C-T **
10840966-T-G **
10840967-T-A **
10840968-G-A **
10911262-C-A **
10924105-A-G **
13251843-C-T 11096167-C-T **
11024502-T-C **
10980576-C-T **
10980611-C-A **
10981026-C-A **
15219077-C-T 13107163-C-T **
11006140-C-G **
11007837-T-C **
11017457-T-A **
11026224-C-T **
10980062-C-T **
11031231-C-G **
11031750-C-A **
11033123-C-A **
11033149-A-ACTCGTTTT **
11033150-T-TAC **
11033160-T-A **
11034904-G-T **
10980107-T-C **
10980051-A-ACACCT **
10924183-C-A **
10956737-T-A **
10928564-C-A **
10930996-C-A **
10931246-G-T **
10942861-G-T **
10945163-C-A **
10950795-C-A **
10950961-C-A **
10971840-C-A **
10980049-C-T **
10976476-T-C **
10976479-A-C **
10976488-C-T **
10976495-T-A **
10976504-C-CATACA **
10976519-T-C **
10976522-T-C **
10976523-C-A **
15218803-A-C 13106889-A-C **
22257342-T-TG 20095456-T-TG DYZ19 **
15252759-C-G 13140845-C-G **
22277599-TTAA-T 20115713-TTAA-T DYZ19 **
22052411-C-A 19890525-C-A **
22065030-A-G 19903144-A-G **
22122245-G-A 19960359-G-A Y30783 **
22212003-G-T 20050117-G-T **
22215205-C-T 20053319-C-T **
22235541-C-G 20073655-C-G DYZ19 **
22257364-C-T 20095478-C-T DYZ19 **
22346212-G-T 20184326-G-T DYZ19 **
22012171-C-A 19850285-C-A **
22513090-C-A 20351204-C-A **
22518395-T-C 20356509-T-C **
22538105-T-C 20376219-T-C Y30784 **
22587734-C-T 20425848-C-T **
22619325-AC-A 20457439-AC-A **
22690144-A-G 20528258-A-G **
22809263-C-A 20647377-C-A **
22045652-C-A 19883766-C-A **
21993970-C-T 19832084-C-T **
22980933-C-A 20819047-C-A **
20230212-C-A 18068326-C-A P5_Dst **
19353995-T-C 17242115-T-C **
19415721-G-T 17303841-G-T Y29871 **
19464072-G-T 17352192-G-T **
19479261-G-A 17367381-G-A **
19554525-C-A 17442645-C-A **
19563255-C-A 17451375-C-A **
20048961-A-G 17937081-A-G P5_Prx **
20249276-CA-C 18087390-CA-C P5_Dst 22×A**
21836340-C-A 19674454-C-A **
21184491-A-T 19022605-A-T Z39875 **
21266023-T-C 19104137-T-C Z39876 **
21336196-G-T 19174310-G-T **
21377274-T-C 19215388-T-C **
21377662-A-G 19215776-A-G **
21435189-T-A 19273303-T-A **
21584227-A-G 19422341-A-G **
22963730-T-A 20801844-T-A **
23041226-A-AG 20879340-A-AG **
19330083-G-T 17218203-G-T **
28694888-C-A 26548741-C-A **
28486081-G-T 26339934-G-T **
28498546-A-G 26352399-A-G **
28610310-C-A 26464163-C-A **
28622098-C-A 26475951-C-A **
28625703-G-T 26479556-G-T **
28632765-A-C 26486618-A-C **
28673088-C-A 26526941-C-A **
28739807-C-A 26593660-C-A **
27919825-A-T 25773678-A-T P1_Y2 **
28798754-GAATCA-G 26652607-GAATCA-G 4×AATCA**
56843278-G-T **
56843279-T-C **
56845721-G-T **
56852722-G-T **
7818-T-C **
10318-T-G **
28157463-T-G 26011316-T-G P1_b4 **
27516160-A-G 25370013-A-G P1_Y2 **
23193134-C-T 21031248-C-T **
23723256-T-A 21561370-T-A **
23231326-C-A 21069440-C-A **
23305784-C-A 21143898-C-A **
23340917-AG-A 21179031-AG-A **
23442733-C-A 21280847-C-A **
23476245-C-T 21314359-C-T **
23476253-G-A 21314367-G-A **
23476260-G-A 21314374-G-A **
23734330-C-A 21572444-C-A **
27216600-T-A 25070453-T-A P1_g3 **
24017410-T-TC 21871263-T-TC **
24388803-A-G 22242656-A-G **
24389220-G-T 22243073-G-T **
25630477-C-A 23484330-C-A P1_b3 **
26046024-A-T 23899877-A-T P1_Y1 **
26467268-G-T 24321121-G-T P1_Y1 **
26500566-T-C 24354419-T-C P1_Y1 **
27053733-G-A 24907586-G-A P1_r4 **
19330116-C-T 17218236-C-T **
19330057-G-GATATC 17218177-G-GATATC **
15290019-C-T 13178118-C-T **
16147495-A-G 14035615-A-G P8_Dst **
15959149-C-T 13847269-C-T **
16029318-C-A 13917438-C-A **
16046542-C-A 13934662-C-A **
16046585-C-A 13934705-C-A **
16046963-T-C 13935083-T-C **
16050259-C-A 13938379-C-A **
16146585-C-T 14034705-C-T P8_Dst **
16166674-A-AG 14054794-A-AG P8_Dst **
15909328-C-A 13797448-C-A **
16411084-T-A 14299204-T-A **
16421129-C-A 14309249-C-A **
16469170-G-T 14357290-G-T **
16710300-C-A 14598420-C-A **
16930131-C-T 14818251-C-T **
16931984-G-A 14820104-G-A **
16938334-C-A 14826454-C-A **
15909380-CTCTT-C 13797500-CTCTT-C **
15834169-C-T 13722289-C-T **
16987233-T-C 14875353-T-C **
15556819-C-CTT 13444939-C-CTT **
15366114-G-T 13254234-G-T **
15366863-G-T 13254983-G-T **
15386568-C-A 13274688-C-A **
15400656-G-T 13288776-G-T **
15423871-G-T 13311991-G-T **
15433448-G-C 13321568-G-C Y30782 **
15556809-A-G 13444929-A-G **
15599920-C-A 13488040-C-A **
15793919-A-T 13682039-A-T **
15615920-T-C 13504040-T-C Z39395 **
15679755-C-A 13567875-C-A **
15687891-C-A 13576011-C-A **
10783466-C-A **
15732232-T-A 13620352-T-A **
15748958-G-A 13637078-G-A **
15762810-C-A 13650930-C-A **
16952638-C-A 14840758-C-A **
16990292-T-C 14878412-T-C **
19330053-G-A 17218173-G-A **
18710391-C-A 16598511-C-A **
18159285-G-T 16047405-G-T **
18159859-C-T 16047979-C-T **
18223759-A-G 16111879-A-G **
18340490-AC-A 16228610-AC-A P6_Prx **
18361348-G-T 16249468-G-T P6_Prx **
18625972-G-T 16514092-G-T **
18626100-T-C 16514220-T-C **
18728750-G-A 16616870-G-A **
18132355-A-C 16020475-A-C **
18750092-C-T 16638212-C-T **
18793827-A-G 16681947-A-G **
18795109-A-G 16683229-A-G **
19146599-AG-A 17034719-AG-A **
19297335-C-T 17185455-C-T **
19297362-C-A 17185482-C-A **
19330050-A-G 17218170-A-G **
18151921-T-A 16040041-T-A **
17825490-G-T 15713610-G-T **
16993356-A-C 14881476-A-C **
17362989-C-A 15251109-C-A **
16993703-G-T 14881823-G-T **
17074685-G-T 14962805-G-T **
17122670-T-C 15010790-T-C **
17122832-G-T 15010952-G-T **
17135919-GCAATA-G 15024039-GCAATA-G **
17297355-T-C 15185475-T-C **
17342886-C-A 15231006-C-A **
17372815-A-T 15260935-A-T **
17786681-C-T 15674801-C-T **
17440414-G-A 15328534-G-A **
17454481-A-T 15342601-A-T **
17511722-CA-C 15399842-CA-C **
17548210-C-A 15436330-C-A Z36128 **
17667079-T-G 15555199-T-G **
17721017-TCC-T 15609137-TCC-T **
17728630-G-A 15616750-G-A **
17786585-T-C 15674705-T-C **
10795603-G-T **
10796984-C-A **
10777193-T-G **
6830641-C-A 6962600-C-A **
7783069-C-A 7915028-C-A **
21037355-C-A 18875469-C-A **
14187183-C-A 12066477-C-A **
4108300-C-A 4240259-C-A **
22166565-G-A 20004679-G-A **
22950284-C-A 20788398-C-A **
14558636-C-A 12446837-C-A **
10693056-C-A **
18173136-C-A 16061256-C-A **
24406512-C-A 22260365-C-A **
4171651-C-A 4303610-C-A **
22215183-C-A 20053297-C-A **
10957840-C-A **
10971348-G-A **
23087575-AT-A 20925689-AT-A **
10841983-C-T **
21009204-T-TCA 18847318-T-TCA P4_Dst **
23065102-C-A 20903216-C-A **
14080107-G-T 11959401-G-T **
14273761-C-A 12153055-C-A **
8980043-G-T 9142434-G-T **
10657073-T-A **
24597833-T-G 22451686-T-G P3_t2 **
16624729-C-A 14512849-C-A **
13947028-C-A 11826322-C-A **
10804684-G-T **
23226475-CA-C 21064589-CA-C **
14667897-C-A 12555963-C-A **
10846904-A-T **
10973884-A-C **
10846834-A-T **
10846848-T-G **
10846863-C-T **
10846873-C-T **
10846875-C-A **
10846895-T-C **
10846900-T-C **
10658151-C-A **
19505345-C-T 17393465-C-T **
10802798-C-A **
3507059-G-T 3639018-G-T **
3108668-C-A 3240627-C-A **
3130710-G-A 3262669-G-A **
3156258-G-T 3288217-G-T **
3194862-G-T 3326821-G-T **
3259936-A-G 3391895-A-G **
3334526-G-T 3466485-G-T **
10769118-G-T **
3513988-T-A 3645947-T-A **
3051332-G-A 3183291-G-A **
3517706-C-A 3649665-C-A **
3528704-A-T 3660663-A-T **
3536998-G-T 3668957-G-T **
3545891-A-G 3677850-A-G **
3548424-G-A 3680383-G-A **
3559686-C-A 3691645-C-A **
3626375-T-C 3758334-T-C **
3099629-C-A 3231588-C-A **
3035175-G-A 3167134-G-A **
19129567-C-A 17017687-C-A **
56849927-C-A **
19206705-C-A 17094825-C-A **
56881325-TA-T **
6516897-C-A 6648856-C-A **
7721322-C-A 7853281-C-A **
3990510-CA-C 4122469-CA-C **
10754440-C-A **
14858628-C-A 12746694-C-A **
5593309-C-CA 5725268-C-CA 15×A**
2992828-G-T 3124787-G-T **
17225892-C-A 15114012-C-A **
21244054-C-A 19082168-C-A **
2670756-C-T 2802715-C-T **
2679327-G-A 2811286-G-A **
2948820-C-A 3080779-C-A **
2963111-AT-A 3095070-AT-A 9×T**
2979054-A-T 3111013-A-T **
6874819-C-A 7006778-C-A **
3815184-G-C 3947143-G-C **
3728694-A-G 3860653-A-G **
56843323-G-T **
4957764-C-A 5089723-C-A **
23438878-AC-A 21276992-AC-A **
19868146-T-TC 17756266-T-TC P5_Prx **
16384681-C-A 14272801-C-A **
10657011-T-A **
56843298-G-A **
56843309-C-T **
56843347-G-T **
20850693-GTA-G 18688807-GTA-G P4_Dst 12×TA**
56843359-C-G **
56855766-A-C **
13610822-C-A 11455146-C-A **
3821584-C-A 3953543-C-A **
8333480-TTTCTTCTTCTTCTTCTTCTTC-T 8465439-TTTCTTCTTCTTCTTCTTCTTC-T 31×TTC**
10657039-G-C **
56839284-C-A **
13855769-C-A 11735063-C-A **
18982511-C-A 16870631-C-A **
5765789-GA-G 5897748-GA-G 12×A**
23052518-C-A 20890632-C-A **
13505111-T-A 11349435-T-A **
13846803-C-A 11726097-C-A **
14006721-G-A 11886015-G-A FGC65416 F18328 **
19330084-G-A 17218204-G-A CTS10219 **
59015673-C-A 56869526-C-A **
59017019-G-C 56870872-G-C **
22257357-C-T 20095471-C-T DYZ19 **
20574944-GTTT-G 18413058-GTTT-G P5_Dst 19×T**
3156204-G-T 3288163-G-T **
58989471-A-T 56843324-A-T **
23311293-A-T 21149407-A-T **
13963391-C-A 11842685-C-A Y65698 **
22855048-T-G 20693162-T-G **
28658592-C-A 26512445-C-A **
10980090-T-C **
11006202-C-A **
10811369-C-A **
17871909-C-A 15760029-C-A **
8913185-G-T 9045144-G-T **
28549933-G-T 26403786-G-T **
14093516-C-A 11972810-C-A **
5976883-C-A 6108842-C-A **
10951405-C-A **
7832170-C-T 7964129-C-T 12×TCTT**
10846929-G-A **
15111500-C-A 12999587-C-A **
10980095-T-C **
10839954-T-G **
10860981-C-A **
13197066-C-A 11041390-C-A **
4444264-C-T 4576223-C-T **
23438868-C-A 21276982-C-A **
7314336-C-A 7446295-C-A **
17218282-C-A 15106402-C-A **
20825611-C-A 18663725-C-A P4_Gap **
26355367-C-A 24209220-C-A P1_Y1 **
13585272-C-A 11429596-C-A **
16030293-C-A 13918413-C-A **
10657054-G-T **
10846880-C-T **
7645236-G-A 7777195-G-A **
16598980-TCAAC-T 14487100-TCAAC-T **
10657064-G-C **
28687351-C-A 26541204-C-A **
19692990-T-TC 17581110-T-TC P5_Prx **
10846894-T-A **
10879623-C-A **
19531492-C-A 17419612-C-A **
17074693-G-C 14962813-G-C **
15556810-T-G 13444930-T-G **
19270534-AT-A 17158654-AT-A **
6648350-TA-T 6780309-TA-T **
8094691-C-A 8226650-C-A **
6784476-GAA-G 6916435-GAA-G 23×A**
15157660-C-A 13045747-C-A **
7433621-C-A 7565580-C-A **
7390155-C-A 7522114-C-A **
11033260-TTCCAC-T **
7243273-C-A 7375232-C-A **
3704524-C-A 3836483-C-A **
3504086-G-T 3636045-G-T **
3777077-T-C 3909036-T-C **
7391814-T-C 7523773-T-C **
7303191-G-A 7435150-G-A **
7330366-C-A 7462325-C-A **
7349019-CT-C 7480978-CT-C **
7374877-C-A 7506836-C-A **
7374898-C-A 7506857-C-A **
7383695-A-C 7515654-A-C **
7385680-C-A 7517639-C-A **
7452813-A-G 7584772-A-G IR1_L **
7141945-C-A 7273904-C-A **
7541546-C-A 7673505-C-A **
8111334-G-C 8243293-G-C **
8218139-C-T 8350098-C-T **
8697542-C-A 8829501-C-A **
8720463-C-T 8852422-C-T **
9055908-C-A **
9047084-G-T 9209475-G-T **
7150401-AT-A 7282360-AT-A 13×T**
7115612-C-A 7247571-C-A **
9574705-G-T 9737096-G-T IR3_Prx **
6593487-T-G 6725446-T-G **
6149290-C-A 6281249-C-A IR3_Dst **
6149296-G-T 6281255-G-T IR3_Dst **
6180325-A-AT 6312284-A-AT IR3_Dst **
6402694-C-A 6534653-C-A **
6445152-A-T 6577111-A-T **
6459894-T-A 6591853-T-A **
3790799-A-G 3922758-A-G **
6606794-G-T 6738753-G-T **
7061135-T-C 7193094-T-C **
6770197-C-G 6902156-C-G **
6911423-G-T 7043382-G-T **
6926387-GT-G 7058346-GT-G **
7015324-CTTTTTTT-C 7147283-CTTTTTTT-C 23×T**
7028715-GACCAC-G 7160674-GACCAC-G **
7040007-G-T 7171966-G-T **
7045721-C-A 7177680-C-A **
7058283-C-A 7190242-C-A **
9541632-C-G 9704023-C-G IR3_Prx **
9806785-A-G 9969176-A-G **
6088582-C-A 6220541-C-A **
10671310-G-T **
10657072-T-C **
10657076-ACTCTG-A **
10657094-C-T **
10659693-C-A **
10665470-C-A **
10666038-G-T **
10671301-G-T **
10673738-C-A **
10657049-CT-G **
10677024-T-A **
10679243-A-T **
10685739-C-A **
10686020-A-G **
10686334-T-C **
10746428-C-A **
10751283-C-A **
10767087-C-A **
10657062-T-C **
10657010-C-T **
9824012-C-A 9986403-C-A **
9969093-T-A 10131484-T-A **
9824409-C-A 9986800-C-A **
9825972-C-A 9988363-C-A **
9925183-C-A 10087574-C-A **
9955722-C-A 10118113-C-A **
9956484-T-C 10118875-T-C **
9959185-A-T 10121576-A-T **
9962511-A-G 10124902-A-G **
10018044-C-A 10180435-C-A **
10657004-C-G **
10050234-C-A 10212625-C-A **
10073344-G-T 10235735-G-T **
10073739-G-T 10236130-G-T **
10632618-T-C **
10654045-C-A **
10654407-C-CTCTATTCT **
10654414-C-T **
10656545-C-G **
6134747-C-A 6266706-C-A **
6519593-A-G 6651552-A-G **
4695970-C-A 4827929-C-A **
5093321-T-C 5225280-T-C **
5519632-C-A 5651591-C-A FGC58113 **
5335999-C-A 5467958-C-A **
4357968-G-A 4489927-G-A **
5267124-A-G 5399083-A-G **
4358083-T-C 4490042-T-C **
4370807-G-T 4502766-G-T **
5227323-G-T 5359282-G-T **
5219361-G-A 5351320-G-A **
5134419-A-G 5266378-A-G **
5112932-C-A 5244891-C-A **
5112146-G-T 5244105-G-T **
4402613-T-A 4534572-T-A **
4432267-C-A 4564226-C-A **
4448982-T-G 4580941-T-G **
6074657-C-A 6206616-C-A **
4336371-C-A 4468330-C-A **
5086364-C-A 5218323-C-A **
4459309-C-A 4591268-C-A **
5028017-G-T 5159976-G-T **
4483979-A-T 4615938-A-T **
5027981-C-G 5159940-C-G **
5017509-G-T 5149468-G-T **
4538688-A-T 4670647-A-T **
4615235-CTATA-C 4747194-CTATA-C 9×TA**
4786293-T-A 4918252-T-A **
4654605-T-G 4786564-T-G **
4757317-C-A 4889276-C-A **
4702884-G-T 4834843-G-T **
4700349-T-G 4832308-T-G **
4654614-T-C 4786573-T-C **
4654626-T-G 4786585-T-G **
4353814-C-T 4485773-C-T **
5535156-T-TAA 5667115-T-TAA **
4201626-A-T 4333585-A-T **
3802789-C-A 3934748-C-A **
5987822-T-A 6119781-T-A **
3804904-G-T 3936863-G-T **
3962011-T-C 4093970-T-C **
5961949-T-C 6093908-T-C **
5904880-T-C 6036839-T-C **
4088425-C-A 4220384-C-A **
5844145-G-A 5976104-G-A **
4132373-C-A 4264332-C-A **
4155960-G-T 4287919-G-T **
5800395-A-T 5932354-A-T **
4201588-A-T 4333547-A-T **
5765681-G-T 5897640-G-T **
5568614-G-T 5700573-G-T **
5658739-G-T 5790698-G-T **
5670862-C-A 5802821-C-A **
4208213-T-C 4340172-T-C **
4223466-A-G 4355425-A-G **
5690182-C-A 5822141-C-A **
5712266-G-T 5844225-G-T **
4201872-C-A 4333831-C-A **
10686684-T-TGCACC ***
15743815-C-T 13631935-C-T ***
10687972-C-A ***
4093432-C-A 4225391-C-A ***
10952466-A-T ***
15497351-C-A 13385471-C-A ***
26152168-CTTCTTTCT-C,CTTCT 24006021-CTTCTTTCT-C,CTTCT P1_Y1 19×TTCT***
10660408-C-T ***
10952474-C-A ***
16041731-C-A 13929851-C-A ***
28324736-C-A 26178589-C-A P1_b4 ***
15626494-C-A 13514614-C-A ***
14610695-C-A 12498897-C-A ***
13645478-T-C 11489802-T-C ***
8854120-G-T 8986079-G-T ***
10894656-C-A ***
17346267-T-C 15234387-T-C ***
6979869-G-A 7111828-G-A ***
5720964-C-T 5852923-C-T ***
17942113-T-TC 15830233-T-TC ***
6674465-ATTTTT-A,ATTTTTT 6806424-ATTTTT-A,ATTTTTT 16×T***
13212438-T-C 11056762-T-C ***
5828999-A-C 5960958-A-C ***
19424985-A-G 17313105-A-G ***
10772543-C-A ***
21328852-C-A 19166966-C-A ***
13456244-C-T 11300568-C-T ***
18196524-G-T 16084644-G-T ***
19216539-C-A 17104659-C-A ***
17633852-CAA-C,CA 15521972-CAA-C,CA 13×A***
15280746-C-A 13168845-C-A ***
18864961-A-T 16753081-A-T ***
6000112-C-A 6132071-C-A ***
17788819-TA-T 15676939-TA-T ***
11018241-T-A ***
16707129-C-CG 14595249-C-CG ***
8216406-CTTT-C,CTTTT 8348365-CTTT-C,CTTTT 16×T***
23050332-C-A 20888446-C-A ***
4890074-G-T 5022033-G-T ***
8422869-CAAAA-C 8554828-CAAAA-C 17×A***
4241665-C-A 4373624-C-A ***
10686703-T-C ***
10959324-C-A ***
10686700-C-G ***
14050862-C-A 11930156-C-A ***
21549297-T-G 19387411-T-G ***
7391781-G-T 7523740-G-T ***
15687625-C-A 13575745-C-A ***
14648627-C-A 12536692-C-A ***
17375603-G-T 15263723-G-T ***
13874115-G-T 11753409-G-T ***
7145592-C-A 7277551-C-A ***
13835164-G-T 11714458-G-T ***
34151-G-C ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

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