Cushing

BigY2: 664963
MDKA Birth: England

Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > Z195/S355 > Z272 > S450 > Z295/S1217

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
664963
22234199-G-A 20072313-G-A BY23138 DYZ19 A*
25977799-A-T 23831652-A-T P1_Y1 A*
6327959-C-T 6459918-C-T IR3_Dst A*
16111213-C-T 13999333-C-T P8_Prx A*
19635719-C-G 17523839-C-G P5_Prx A*
19878313-A-G 17766433-A-G P5_Prx A*
20627797-C-A 18465911-C-A P4_Prx A*
20630453-T-C 18468567-T-C P4_Prx A*
20729135-A-C 18567249-A-C P4_Prx A*
22277817-G-A 20115931-G-A DYZ19 A*
22420199-C-T 20258313-C-T Z3777 DYZ19 +
22272260-A-T 20110374-A-T BY43730 DYZ19 +
7789385-T-G 7921344-T-G Y128231 YY+
8284205-A-T 8416164-A-T Y129524 YY+
8761302-G-A 8893261-G-A Y129446 YY+
8795824-C-T 8927783-C-T Y128567 YY+
9882809-G-A 10045200-G-A Y129185 YY+
14195395-C-A 12074689-C-A Y128868 Y+
14284489-G-C 12163783-G-C Y129438 Y+
14642852-G-A 12530921-G-A Y129217 YY+
14824480-T-A 12712547-T-A Y130077 YY+
15706050-T-C 13594170-T-C Y130202 YY+
15739215-T-C 13627335-T-C Y128854 YY+
16402948-A-G 14291068-A-G Y129635 YY+
17133869-G-A 15021989-G-A Y129736 YY+
17436448-A-G 15324568-A-G Y130328 YY+
18046059-C-T 15934179-C-T Y129367 YY+
18239195-C-T 16127315-C-T Y130173 Y+
18748279-G-C 16636399-G-C Y129399 YY+
18766254-A-C 16654374-A-C Y129319 YY+
19104347-A-T 16992467-A-T Y128576 YY+
21389305-C-A 19227419-C-A Y129492 YY+
21688612-C-T 19526726-C-T Y129845 YY+
21732410-T-G 19570524-T-G Y128557 YY+
22263250-C-T 20101364-C-T BY214699 DYZ19 +
22293940-C-G 20132054-C-G DYZ19 +
22466284-G-T 20304398-G-T BY221702 DYZ19 +
22515756-C-T 20353870-C-T Y128336 Y+
22793473-C-A 20631587-C-A Y128401 YY+
23404100-G-A 21242214-G-A Y128790 YY+
23546387-C-A 21384501-C-A Y128041 YY+
28734502-C-T 26588355-C-T Y129080 Y+
13927-G-A +
18871667-T-G 16759787-T-G **
13485564-C-G 11329888-C-G **
18950635-T-A 16838755-T-A BY61789Y8767 FGC22568 **
15279206-G-GTT 13167305-G-GTT 13×T**
7453566-AGTGTGT-A 7585525-AGTGTGT-A IR1_L 16×GT**
21834181-AGTTTT-A 19672295-AGTTTT-A 4×GTTTT**
10757364-CCACTCCACTG-C **
21846452-C-A 19684566-C-A 26×T**
17923695-AAG-A 15811815-AAG-A **
10673917-C-A **
10763085-C-T **
4371951-C-A 4503910-C-A **
10693354-T-A **
10673921-T-C **
10673931-T-TACATC **
15866161-C-A 13754281-C-A **
23603174-C-A 21441288-C-A **
19739352-CA-C 17627472-CA-C P5_Prx **
10958823-T-C FT438210 **
10755351-G-T **
9669967-G-T 9832358-G-T IR3_Prx **
23305692-C-A 21143806-C-A **
19075658-C-A 16963778-C-A **
10824127-C-T **
24600648-G-T 22454501-G-T P3_t2 **
7085377-G-GA 7217336-G-GA 10×A**
56835305-CAA-G **
3435823-C-A 3567782-C-A **
10924391-T-G **
28812522-A-G 26666375-A-G **
9953166-C-A 10115557-C-A **
10657404-C-G **
11027347-A-C **
10926517-T-A **
10926521-T-C **
10658169-G-T **
28774508-C-A 26628361-C-A **
21752615-G-T **
13696713-CAA-C 11541037-CAA-C **
13485548-C-T 11329872-C-T **
10808944-A-C **
10808950-C-G **
10808958-C-CGTTCA **
13939925-C-A 11819219-C-A **
27991207-A-AC 25845060-A-AC P1_Y2 **
10808947-C-A **
10763090-C-T **
16181025-C-A 14069145-C-A **
18204984-AC-A 16093104-AC-A **
5976476-C-A 6108435-C-A **
13624303-C-A 11468627-C-A **
27496997-A-T 25350850-A-T P1_Y2 **
24577902-A-C 22431755-A-C P3_t2 **
10924414-T-A **
7250448-C-CA 7382407-C-CA 8×A**
10789334-C-T **
20603914-G-A 18442028-G-A P5_Dst **
10755379-C-T **
10980511-C-A **
10808010-GCATTC-G **
10796694-T-C **
21211272-G-T 19049386-G-T **
4302207-C-A 4434166-C-A **
10648074-T-A **
25990666-C-A 23844519-C-A P1_Y1 **
4374711-T-G 4506670-T-G **
6179621-G-T 6311580-G-T IR3_Dst **
8481967-TAAA-T 8613926-TAAA-T 15×A**
22535994-C-A 20374108-C-A **
10796637-C-T **
10824171-C-G **
6770825-T-C 6902784-T-C **
10824222-AGTTCC-T **
14422222-C-A 12301497-C-A **
10872273-T-C **
10872278-T-C **
10872290-C-T **
10872291-C-A **
10872315-C-G **
10826213-T-C **
10837842-A-C **
10837848-T-A **
11674706-C-A **
16279479-C-A 14167599-C-A **
13726353-T-A 11570677-T-A **
14505994-C-A 12394199-C-A **
10747099-C-A **
14054972-C-A 11934266-C-A **
10988872-T-C **
10677555-C-T **
10677566-C-CATTCT **
5557349-C-A 5689308-C-A **
6773807-T-G 6905766-T-G **
22949878-C-CTTT 20787992-C-CTTT 23×T**
19418443-C-A 17306563-C-A **
10876853-C-A **
6314974-G-GGT 6446933-G-GGT IR3_Dst **
11025258-C-T **
14021252-A-C 11900546-A-C **
13726341-C-G 11570665-C-G **
10983268-A-T **
11037945-TTCCAC-T **
10796659-T-C **
10824138-A-C **
10824139-T-G **
10824208-ATTCCT-A **
25990670-C-A 23844523-C-A P1_Y1 **
10781109-T-C **
27584552-G-T 25438405-G-T P1_Y2 **
13576167-C-A 11420491-C-A **
2762681-C-A 2894640-C-A **
18730396-A-C 16618516-A-C **
20612166-G-T 18450280-G-T P4_Prx **
22809831-C-A 20647945-C-A **
7183822-C-A 7315781-C-A **
10851041-A-G **
10851079-C-G **
10872334-A-T **
10843666-C-G **
10843678-C-G **
4081706-C-A 4213665-C-A **
10796676-C-G **
17546046-G-T 15434166-G-T **
10880343-AT-A **
10785284-A-C **
9234312-A-C 9396703-A-C **
14367699-C-A 12246995-C-A **
21713455-C-A 19551569-C-A **
15202550-G-T 13090636-G-T **
10997157-T-A **
19204014-C-A 17092134-C-A **
15921751-C-A 13809871-C-A **
10884002-C-A **
10773677-G-T **
7248461-C-A 7380420-C-A **
13222161-A-G 11066485-A-G **
19755995-T-G 17644115-T-G P5_Prx **
9181027-G-T 9343418-G-T **
10757166-ATTCC-A **
10944688-TCAC-T **
10944701-C-G **
23495652-A-C 21333766-A-C **
28429428-C-A 26283281-C-A P1_gr2 9×A**
10658174-T-C **
7237934-C-A 7369893-C-A **
3286533-C-A 3418492-C-A **
3436988-A-T 3568947-A-T **
3477619-G-T 3609578-G-T **
3513312-G-T 3645271-G-T **
3604530-G-T 3736489-G-T **
4077647-C-A 4209606-C-A **
4094672-C-A 4226631-C-A **
4337589-G-T 4469548-G-T **
4343462-C-A 4475421-C-A **
4690575-A-AT 4822534-A-AT 9×T**
4767684-C-A 4899643-C-A **
4926060-G-T 5058019-G-T **
5220537-TTTTATGTTA-T 5352496-TTTTATGTTA-T **
5459940-G-A 5591899-G-A **
5560743-C-A 5692702-C-A **
5592261-G-T 5724220-G-T **
6083815-G-T 6215774-G-T **
6234267-A-C 6366226-A-C IR3_Dst **
6234279-T-G 6366238-T-G IR3_Dst **
6279333-T-G 6411292-T-G IR3_Dst **
6355664-G-T 6487623-G-T **
6384669-G-T 6516628-G-T **
6401468-G-C 6533427-G-C **
6466080-A-C 6598039-A-C **
6509293-T-G 6641252-T-G **
6922396-T-G 7054355-T-G **
7182222-G-A 7314181-G-A **
7210109-C-A 7342068-C-A **
7248170-G-T 7380129-G-T **
7311766-C-A 7443725-C-A **
7319094-C-A 7451053-C-A **
7321448-C-T 7453407-C-T Z34649Z34649 **
7896678-C-A 8028637-C-A **
7970280-C-A 8102239-C-A **
8350826-T-C 8482785-T-C **
8408615-G-A 8540574-G-A **
9118118-A-G **
9172448-C-T 9334839-C-T **
9402916-A-T 9565307-A-T **
9747158-A-T 9909549-A-T **
9747158-AG-A 9909549-AG-A **
9961500-C-A 10123891-C-A **
10037718-A-G 10200109-A-G **
10658180-T-C **
10690650-G-A **
10691043-C-CATCAG **
10750509-T-A **
10753631-C-T **
10766432-C-A **
10774047-T-G **
10781097-C-G **
10781116-C-T **
10785040-C-A **
10786386-C-A **
10796656-C-CTACAA **
10796708-A-T **
10796709-T-C **
10796711-C-A **
10796945-T-A **
10838644-C-G **
10839793-A-T **
10846940-C-A **
10847638-TTTCCA-T **
10860625-A-C **
10870632-C-T **
10872258-T-C **
10872261-T-A **
10924411-C-G **
10924415-T-A **
10930801-C-A FT178542 **
10930808-T-C **
10932041-T-G **
10937830-A-T **
10944651-C-T **
10944661-C-T **
10951263-C-A **
10956568-C-CCACTA **
10965166-C-A **
10971712-T-C **
10993188-C-A **
11009255-AATTCC-A **
11033258-TG-T **
11033261-TCCAC-T **
13456167-C-A 11300491-C-A **
13469506-A-T 11313830-A-T **
13478185-G-T 11322509-G-T **
13624660-C-A 11468984-C-A **
13643361-G-T 11487685-G-T **
13695550-G-A 11539874-G-A **
13707420-A-C 11551744-A-C **
13726370-G-A 11570694-G-A **
11648955-G-T **
11669937-T-A **
11669943-G-T **
13895165-C-A 11774459-C-A **
13939715-C-A 11819009-C-A **
14142443-C-T 12021737-C-T **
14355214-T-A 12234509-T-A **
14384680-T-A 12263976-T-A **
14607777-C-A 12495979-C-A **
14806120-C-A 12694191-C-A **
15041054-T-C 12929144-T-C **
15137890-C-A 13025977-C-A **
15699749-A-G 13587869-A-G **
15936938-C-A 13825058-C-A **
16029047-G-T 13917167-G-T **
16092979-A-G 13981099-A-G **
16095993-C-A 13984113-C-A **
16422415-C-A 14310535-C-A **
16427294-C-A 14315414-C-A **
16619758-A-C 14507878-A-C **
16710296-T-C 14598416-T-C Y28956 **
16710304-A-G 14598424-A-G Y29542 **
16971362-C-A 14859482-C-A **
17181513-C-A 15069633-C-A **
17188237-C-A 15076357-C-A **
17250996-T-C 15139116-T-C **
17371143-C-A 15259263-C-A **
17840061-C-T 15728181-C-T **
17843203-T-C 15731323-T-C **
18035878-C-A 15923998-C-A **
18480041-CTG-C 16368161-CTG-C P6_Dst **
19067973-C-A 16956093-C-A **
19271304-T-C 17159424-T-C **
19377306-G-T 17265426-G-T **
19377515-A-C 17265635-A-C **
19416791-G-T 17304911-G-T **
19745013-T-A 17633133-T-A P5_Prx **
19745014-T-A 17633134-T-A P5_Prx **
19745015-ACC-A 17633135-ACC-A P5_Prx **
19815481-G-T 17703601-G-T P5_Prx **
20668518-C-A 18506632-C-A P4_Prx **
20914515-A-C 18752629-A-C P4_Dst **
21324237-G-T 19162351-G-T **
21477142-C-A 19315256-C-A **
21708600-G-T 19546714-G-T **
21774027-C-A 19612141-C-A **
21809930-C-A 19648044-C-A **
21809934-C-T 19648048-C-T **
22040900-AG-T 19879014-AG-T **
22132385-C-T 19970499-C-T **
22236852-G-C 20074966-G-C DYZ19 **
22446888-G-C 20285002-G-C DYZ19 **
22520750-C-A 20358864-C-A **
22520793-A-AC 20358907-A-AC **
22659423-A-G 20497537-A-G **
22902000-C-T 20740114-C-T **
23052533-C-A 20890647-C-A **
24205459-G-A 22059312-G-A P3_b1 **
24875558-C-A 22729411-C-A g1 **
25959755-T-G 23813608-T-G P1_Y1 **
25959757-C-A 23813610-C-A P1_Y1 **
25959761-T-G 23813614-T-G P1_Y1 **
27603671-C-A 25457524-C-A P1_Y2 **
27603686-C-A 25457539-C-A P1_Y2 **
28516680-C-A 26370533-C-A **
28591133-A-G 26444986-A-G **
56728205-C-A **
56842970-A-G **
56849089-C-G **
13821211-A-T 11700505-A-T ***
13826145-A-AGGAATGGAAT 11705439-A-AGGAATGGAAT 10×GGAAT***
17887553-A-AT 15775673-A-AT 10×T***
58981812-C-A,T 56835665-C-A,T ***
25931592-GAAGAAAGA-G,GAAGA 23785445-GAAGAAAGA-G,GAAGA P1_Y1 14×AAGA***
11677737-C-A ***
14540849-G-T 12429050-G-T ***
22200999-C-A 20039113-C-A ***
19378110-C-A 17266230-C-A ***
4504930-C-A 4636889-C-A ***
7009187-CTTT-C,CT 7141146-CTTT-C,CT 19×T***
11658447-C-A ***
7436324-C-A 7568283-C-A ***
3847317-G-T 3979276-G-T ***
6401464-A-G 6533423-A-G ***
7233116-C-A 7365075-C-A ***
10692727-C-A ***
10956631-C-T ***
13481077-C-A 11325401-C-A ***
11643787-T-G ***
13995180-C-A 11874474-C-A ***
14547295-C-A 12435496-C-A ***
14639318-C-A 12527387-C-A ***
15410633-CAA-C,CA 13298753-CAA-C,CA 28×A***
15676854-C-A 13564974-C-A ***
15677953-AAG-T 13566073-AAG-T ***
17238356-G-T 15126476-G-T ***
18242171-C-A 16130291-C-A ***
22287060-G-A 20125174-G-A DYZ19 ***
24884126-G-T 22737979-G-T g1 ***
56825834-C-A ***
56829906-G-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.