Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > DF21/S192 > FGC3213 > ZZ1 > S3058 > S424 > LSC > LSC1 > LSC1a > ZZ23 > Y12464 > ZZ25 > Z29545 > Z29546

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
163654
BigY2
163654
Manual
Edits
19846711-G-A 17734831-G-A P5_Prx ***A*
14599208-T-C 12487408-T-C YY+**
13312157-AC-A 11156481-AC-A +
18826054-G-C 16714174-G-C YY++
18882956-AT-A 16771076-AT-A ++
21705830-T-G 19543944-T-G YY++
13693369-G-A 11537693-G-A ***+
13282490-G-C 11126814-G-C ZS218 +
8521514-C-T 8653473-C-T YY++
15859345-A-G 13747465-A-G YY++
5910947-C-T 6042906-C-T F9497 ++
17150717-G-GA 15038837-G-GA 9×A+
15866312-G-A 13754432-G-A **
15712073-A-C 13600193-A-C **
15739924-A-G 13628044-A-G **
15740753-C-A 13628873-C-A **
15776813-C-A 13664933-C-A **
14914672-C-CTT 12802739-C-CTT 17×T**
15786518-A-T 13674638-A-T **
15844632-G-A 13732752-G-A **
15898983-A-G 13787103-A-G **
15622595-CT-C 13510715-CT-C **
15904148-TCA-T 13792268-TCA-T **
15909244-T-G 13797364-T-G **
14908328-T-A 12796395-T-A **
15928480-G-T 13816600-G-T **
14858658-C-A 12746724-C-A **
14795106-A-G 12683177-A-G **
14779595-C-A 12667665-C-A **
15997384-A-G 13885504-A-G **
15653743-C-A 13541863-C-A **
15593190-C-A 13481310-C-A **
15309719-G-A 13197823-G-A **
15358666-G-C 13246785-G-C **
15309727-G-A 13197831-G-A **
15315393-C-A 13203498-C-A **
15320759-T-A 13208877-T-A **
15324099-C-A 13212217-C-A **
15334531-C-A 13222649-C-A **
15309709-T-A 13197813-T-A **
15358642-C-T 13246761-C-T **
15358650-C-T 13246769-C-T **
15364056-T-G 13252176-T-G **
15034942-C-A 12923030-C-A **
15388001-C-A 13276121-C-A **
15401870-T-A 13289990-T-A 9×A**
15430556-C-A 13318676-C-A **
15177540-C-A 13065626-C-A **
15433090-C-A 13321210-C-A **
15433501-C-A 13321621-C-A **
15168786-C-A 13056872-C-A **
15468614-C-A 13356734-C-A **
24228-A-T **
16056996-C-A 13945116-C-A **
16000248-C-A 13888368-C-A **
17085691-T-G 14973811-T-G **
16622081-T-A 14510201-T-A **
16624703-T-G 14512823-T-G **
16640155-C-A 14528275-C-A **
16667937-G-T 14556057-G-T **
16702329-A-G 14590449-A-G **
16738219-C-A 14626339-C-A **
16786076-G-T 14674196-G-T **
16855332-A-C 14743452-A-C **
17004528-G-T 14892648-G-T **
17092594-C-A 14980714-C-A **
16602658-C-A 14490778-C-A **
17158606-C-A 15046726-C-A **
17199497-AT-A 15087617-AT-A 8×T**
17246992-T-G 15135112-T-G **
17270547-C-A 15158667-C-A **
17313497-A-G 15201617-A-G **
17370995-T-C 15259115-T-C **
17381367-G-C 15269487-G-C **
17490210-C-A 15378330-C-A **
17502860-C-A 15390980-C-A **
16607583-C-A 14495703-C-A **
16588294-C-G 14476414-C-G **
16037318-C-A 13925438-C-A **
16272297-T-C 14160417-T-C **
16054283-C-A 13942403-C-A **
14712586-A-C 12600653-A-C **
16060685-C-A 13948805-C-A **
16089715-C-A 13977835-C-A **
16092716-T-G 13980836-T-G **
16115825-T-C 14003945-T-C P8_Prx **
16177297-C-T 14065417-C-T **
16220669-C-A 14108789-C-A **
16242984-T-C 14131104-T-C **
16294943-G-T 14183063-G-T **
16528308-C-A 14416428-C-A **
16324114-G-T 14212234-G-T **
16340988-C-T 14229108-C-T **
16345100-T-C 14233220-T-C **
16427616-G-T 14315736-G-T **
16429665-G-T 14317785-G-T **
16464878-C-A 14352998-C-A **
16485770-C-A 14373890-C-A Y96485 ALK189 **
16505169-C-A 14393289-C-A **
16526727-T-C 14414847-T-C **
14753173-C-A 12641242-C-A **
14562817-G-A 12451017-G-A **
14704360-T-A 12592426-T-A **
13642488-A-T 11486812-A-T **
13441631-AG-A 11285955-AG-A **
13461098-T-G 11305422-T-G **
13462260-C-A 11306584-C-A **
13474849-C-A 11319173-C-A **
13505480-C-T 11349804-C-T **
13520785-C-A 11365109-C-A **
13620826-C-A 11465150-C-A **
13642486-C-A 11486810-C-A **
11644891-A-T **
13441608-T-A 11285932-T-A **
11653415-T-C **
11659906-C-A **
13809525-A-T 11688819-A-T **
13855769-C-A 11735063-C-A **
13870475-C-A 11749769-C-A **
13874078-G-T 11753372-G-T **
13890846-G-T 11770140-G-T **
13895206-C-A 11774500-C-A **
13441617-A-C 11285941-A-C **
13441601-G-A 11285925-G-A **
13898814-A-T 11778108-A-T **
11017258-G-C **
10989491-CTCCG-C **
10989668-G-C **
10992973-C-T **
10995670-C-A **
11000294-G-T **
11013966-T-C **
11013980-C-A **
11016087-C-A **
11028139-C-A **
13441596-G-A 11285920-G-A **
11037152-C-A **
13195877-T-A 11040201-T-A **
13215341-C-A 11059665-C-A **
13216507-C-A 11060831-C-A **
13248838-C-A 11093162-C-A **
13302151-C-T 11146475-C-T **
13316084-C-A 11160408-C-A **
13329188-G-A 11173512-G-A **
13409260-T-C 11253584-T-C **
13895957-C-A 11775251-C-A **
13902241-C-A 11781535-C-A **
14649530-C-A 12537595-C-A **
14501900-C-A 12390105-C-A **
14397374-C-A 12276670-C-A **
14397501-C-A 12276797-C-A **
14428811-C-T 12308086-C-T **
14431312-C-A 12310585-C-A **
14432327-T-C 12311600-T-C **
14471798-A-G 12351067-A-G **
12379259-C-A **
14495756-C-A 12383953-C-A **
14508738-T-C 12396943-T-C **
14385232-C-A 12264528-C-A **
14508748-A-G 12396953-A-G **
14511404-C-A 12399609-C-A **
14526876-T-C 12415077-T-C **
14549558-A-C 12437759-A-C **
14561908-C-T 12450109-C-T **
17512599-C-A 15400719-C-A **
14564038-T-C 12452238-T-C **
14593713-C-A 12481913-C-A **
14635577-T-C 12523646-T-C **
14395683-A-T 12274979-A-T **
14302027-G-T 12181321-G-T **
13902294-C-G 11781588-C-G **
14073916-C-A 11953210-C-A **
13938654-C-G 11817948-C-G **
13960599-G-T 11839893-G-T **
13960745-G-C 11840039-G-C **
13961568-A-G 11840862-A-G **
13975849-C-A 11855143-C-A **
14022105-C-A 11901399-C-A **
14025649-G-A 11904943-G-A **
14059490-C-A 11938784-C-A **
14086087-C-A 11965381-C-A **
14295597-A-G 12174891-A-G **
14089859-C-A 11969153-C-A **
14176372-G-A 12055666-G-A Y49094 **
14183341-A-T 12062635-A-T **
14195232-G-A 12074526-G-A **
14195232-G-GA 12074526-G-GA **
14245186-G-A 12124480-G-A **
14263358-A-G 12142652-A-G **
14283437-C-A 12162731-C-A **
14293804-C-A 12173098-C-A **
17504835-C-T 15392955-C-T **
17770244-C-T 15658364-C-T **
17575534-T-A 15463654-T-A **
23199871-A-T 21037985-A-T **
22954670-T-A 20792784-T-A **
22994694-C-A 20832808-C-A **
23087598-C-A 20925712-C-A **
23119949-C-A 20958063-C-A **
23142297-G-T 20980411-G-T **
23144340-C-A 20982454-C-A **
23196645-C-A 21034759-C-A PH5360 **
23199722-A-G 21037836-A-G **
23255920-C-T 21094034-C-T **
22884895-C-A 20723009-C-A **
23345625-T-C 21183739-T-C **
23357272-C-A 21195386-C-A **
23361043-C-A 21199157-C-A **
23401390-C-A 21239504-C-A **
24205368-C-A 22059221-C-A P3_b1 **
24220971-G-T 22074824-G-T P3_b1 **
24300815-T-TTG 22154668-T-TTG P3_t1 **
24363741-C-A 22217594-C-A **
24384945-T-A 22238798-T-A **
22914638-C-A 20752752-C-A **
22849517-A-C 20687631-A-C **
24513675-C-A 22367528-C-A **
22241464-A-G 20079578-A-G DYZ19 **
22167270-T-C 20005384-T-C **
22167272-G-C 20005386-G-C **
22167274-T-C 20005388-T-C **
22170219-T-G 20008333-T-G **
22201749-A-T 20039863-A-T **
22205610-G-T 20043724-G-T **
22205617-C-A 20043731-C-A **
22210529-A-G 20048643-A-G **
22241481-T-G 20079595-T-G DYZ19 **
22797998-G-A 20636112-G-A **
22352476-T-A 20190590-T-A DYZ19 **
22352498-T-G 20190612-T-G DYZ19 **
22447684-G-A 20285798-G-A DYZ19 **
22447691-C-T 20285805-C-T DYZ19 **
22520787-TCAAA-T 20358901-TCAAA-T **
22659520-C-A 20497634-C-A **
22659717-G-T 20497831-G-T **
22732859-C-A 20570973-C-A **
22775140-T-C 20613254-T-C **
24422553-C-A 22276406-C-A **
24600636-C-A 22454489-C-A P3_t2 **
22078108-C-A 19916222-C-A **
28734304-C-A 26588157-C-A **
28622090-G-T 26475943-G-T **
28633624-C-A 26487477-C-A **
28643824-C-A 26497677-C-A **
28653843-C-A 26507696-C-A **
28698843-C-A 26552696-C-A **
28701898-A-T 26555751-A-T **
28704708-T-C 26558561-T-C **
28720211-C-A 26574064-C-A **
28742363-C-A 26596216-C-A **
28614873-C-A 26468726-C-A **
28800728-A-T 26654581-A-T **
56685678-C-T **
56685685-G-T **
56828259-C-A **
56847140-C-G **
56847169-G-C **
56847215-T-A **
56849648-A-G **
10598-C-T **
28617561-A-C 26471414-A-C **
28545801-A-G 26399654-A-G **
25709419-A-G 23563272-A-G P1_b3 **
27546782-C-A 25400635-C-A P1_Y2 **
25709420-G-GT 23563273-G-GT P1_b3 **
25709432-C-G 23563285-C-G P1_b3 **
25709437-T-C 23563290-T-C P1_b3 **
26139480-T-TA 23993333-T-TA P1_Y1 **
26286025-G-T 24139878-G-T P1_Y1 **
26394678-T-G 24248531-T-G P1_Y1 **
26415663-C-A 24269516-C-A P1_Y1 **
27546775-G-C 25400628-G-C P1_Y2 **
27576075-A-C 25429928-A-C P1_Y2 **
28545145-T-G 26398998-T-G **
27603561-T-G 25457414-T-G P1_Y2 **
27862605-A-G 25716458-A-G P1_Y2 **
27873089-C-A 25726942-C-A P1_Y2 **
28229025-T-A 26082878-T-A P1_b4 **
28462270-G-T 26316123-G-T **
28496859-C-A 26350712-C-A **
28506113-A-C 26359966-A-C **
28521663-C-T 26375516-C-T **
28542416-CAAAAA-C 26396269-CAAAAA-C 17×A**
22089932-T-A 19928046-T-A **
22048489-C-A 19886603-C-A **
17597912-A-G 15486032-A-G **
18605212-T-G 16493332-T-G **
18204985-CAAA-C 16093105-CAAA-C 23×A**
18206683-C-A 16094803-C-A **
18211094-C-A 16099214-C-A **
18256212-C-T 16144332-C-T **
18343633-G-A 16231753-G-A P6_Prx **
18344530-T-TGA 16232650-T-TGA P6_Prx **
18395844-C-A 16283964-C-A P6_Gap **
18524347-T-C 16412467-T-C P6_Dst **
18659736-C-A 16547856-C-A **
18191329-C-A 16079449-C-A **
18742327-C-T 16630447-C-T **
18742340-G-T 16630460-G-T **
18767729-C-A 16655849-C-A **
18819485-C-A 16707605-C-A **
18867333-C-T 16755453-C-T **
18867338-TC-T 16755458-TC-T **
18869064-C-A 16757184-C-A **
18989677-C-G 16877797-C-G **
19052443-G-A 16940563-G-A **
18191872-G-T 16079992-G-T **
18185153-G-T 16073273-G-T **
19079063-G-T 16967183-G-T **
17782704-T-G 15670824-T-G **
17638223-T-C 15526343-T-C **
17770220-C-CACGATTCATGCCATT 15658340-C-CACGATTCATGCCATT **
17770228-G-A 15658348-G-A **
10986734-T-C **
17770250-T-C 15658370-T-C **
17770265-C-A 15658385-C-A **
17770274-C-T 15658394-C-T **
17770275-A-G 15658395-A-G **
17834415-T-G 15722535-T-G **
18174597-C-A 16062717-C-A **
17840046-C-A 15728166-C-A **
17859844-C-A 15747964-C-A **
17865424-G-A 15753544-G-A **
17870848-C-A 15758968-C-A **
17898112-A-G 15786232-A-G **
17923655-A-G 15811775-A-G **
17923675-A-G 15811795-A-G **
17926453-C-A 15814573-C-A **
18127659-C-A 16015779-C-A **
19078507-C-A 16966627-C-A **
19079289-T-C 16967409-T-C **
21987350-A-G 19825464-A-G **
21211511-A-C 19049625-A-C **
20830333-C-A 18668447-C-A P4_Gap **
20840953-C-A 18679067-C-A P4_Gap **
20865358-A-ACC 18703472-A-ACC P4_Dst **
20865408-C-T 18703522-C-T P4_Dst **
20865415-G-A 18703529-G-A P4_Dst **
21054454-C-A 18892568-C-A **
21182391-G-A 19020505-G-A **
21196456-C-A 19034570-C-A **
21427821-TA-T 19265935-TA-T **
20637660-GTC-T 18475774-GTC-T P4_Prx **
21447815-T-C 19285929-T-C **
21457505-G-T 19295619-G-T **
21467938-C-G 19306052-C-G **
21531518-C-A 19369632-C-A **
21665735-A-C 19503849-A-C **
21836266-G-T 19674380-G-T **
21863855-G-A 19701969-G-A **
21875808-G-C 19713922-G-C **
21919368-G-T 19757482-G-T **
20637682-G-C 18475796-G-C P4_Prx **
20614900-A-G 18453014-A-G P4_Prx **
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19385091-A-G 17273211-A-G **
19122120-C-A 17010240-C-A **
19126462-T-AAAAAAAAAA 17014582-T-AAAAAAAAAA **
19126480-T-C 17014600-T-C **
19223229-C-A 17111349-C-A **
19248023-C-A 17136143-C-A **
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19312253-C-A 17200373-C-A **
19449148-G-A 17337268-G-A **
20434713-C-A 18272827-C-A P5_Dst **
19449166-A-G 17337286-A-G **
19479458-C-A 17367578-C-A **
19544530-C-A 17432650-C-A **
19663384-C-G 17551504-C-G P5_Prx **
19732411-T-TCGAA 17620531-T-TCGAA P5_Prx **
19844933-C-A 17733053-C-A P5_Prx **
20101729-C-CATAT 17989849-C-CATAT P5_Dst **
20312788-T-TC 18150902-T-TC P5_Dst **
20332149-T-C 18170263-T-C P5_Dst **
10987753-A-ACACTC **
11017263-C-T **
10977113-C-A **
6748040-C-A 6879999-C-A **
5936339-A-C 6068298-A-C **
6310814-G-A 6442773-G-A IR3_Dst **
6375599-T-G 6507558-T-G **
6402826-C-A 6534785-C-A **
6465472-C-T 6597431-C-T **
10973659-T-A **
6756879-A-C 6888838-A-C **
5869962-T-A 6001921-T-A **
6756881-T-C 6888840-T-C **
6756897-A-G 6888856-A-G **
6756908-CAAAA-C 6888867-CAAAA-C 26×A**
6795262-C-A 6927221-C-A **
6807011-G-T 6938970-G-T **
6874570-C-A 7006529-C-A **
5935376-C-A 6067335-C-A **
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6978238-T-C 7110197-T-C **
5107443-A-T 5239402-A-T **
4696941-G-A 4828900-G-A **
4805426-C-A 4937385-C-A **
4901583-C-A 5033542-C-A **
4902502-A-G 5034461-A-G **
4908192-AG-A 5040151-AG-A **
4969039-C-A 5100998-C-A **
5140463-A-G 5272422-A-G **
5755944-G-T 5887903-G-T **
5190021-T-A 5321980-T-A **
5242874-A-C 5374833-A-C **
5318368-T-A 5450327-T-A **
5586104-T-A 5718063-T-A **
5605984-A-G 5737943-A-G **
5673590-G-A 5805549-G-A **
5728329-C-A 5860288-C-A **
6925630-G-T 7057589-G-T **
6981256-C-A 7113215-C-A **
4626764-T-A 4758723-T-A **
7317034-T-C 7448993-T-C **
7207379-AT-A 7339338-AT-A **
7211319-C-A 7343278-C-A **
7240897-C-A 7372856-C-A **
7286849-A-G 7418808-A-G **
7297141-G-T 7429100-G-T **
7302348-C-A 7434307-C-A **
7333007-G-A 7464966-G-A **
7195299-G-T 7327258-G-T **
7340416-C-G 7472375-C-G **
7349182-C-A 7481141-C-A **
7362316-T-G 7494275-T-G **
7414269-C-A 7546228-C-A **
7423911-T-C 7555870-T-C **
7432367-C-A 7564326-C-A **
7195307-C-G 7327266-C-G 16×A**
7186169-C-A 7318128-C-A **
7021779-A-G 7153738-A-G **
7106295-A-G 7238254-A-G **
7040438-G-T 7172397-G-T **
7043505-G-T 7175464-G-T **
7095188-T-A 7227147-T-A **
7097970-C-A 7229929-C-A **
7098807-G-A 7230766-G-A **
7101061-C-G 7233020-C-G **
7131406-CT-C 7263365-CT-C **
7169965-C-A 7301924-C-A **
7134894-CAAA-C 7266853-CAAA-C 13×A**
7135448-C-A 7267407-C-A **
7142771-C-A 7274730-C-A **
7160414-C-A 7292373-C-A **
7160920-T-A 7292879-T-A **
7166571-C-G 7298530-C-G **
7167629-C-A 7299588-C-A **
4687488-C-A 4819447-C-A **
4626334-T-A 4758293-T-A **
7578918-C-A 7710877-C-A **
2745833-C-A 2877792-C-A **
13457728-T-C 11302052-T-C **
17203327-CTTT-C 15091447-CTTT-C 21×T**
10841131-G-C **
10935464-G-C **
2683423-C-A 2815382-C-A **
2708483-C-A 2840442-C-A **
2799549-C-T 2931508-C-T **
2774871-C-A 2906830-C-A **
2810423-A-T 2942382-A-T **
2810424-G-T 2942383-G-T **
2810431-G-T 2942390-G-T **
2909579-C-A 3041538-C-A **
2981369-T-G 3113328-T-G **
3061173-C-A 3193132-C-A **
13457706-C-G 11302030-C-G **
14910798-ATTTT-A 12798865-ATTTT-A 21×T**
3229141-A-G 3361100-A-G **
17622770-C-A 15510890-C-A **
14991021-C-A 12879106-C-A CTS3524 **
14991027-C-G 12879112-C-G CTS3525 **
19720733-G-T 17608853-G-T P5_Prx **
27417747-G-A 25271600-G-A P1_g3 **
25709418-G-T 23563271-G-T P1_b3 **
19126468-G-A 17014588-G-A **
21922103-AG-A 19760217-AG-A **
13940983-C-A 11820277-C-A **
24447175-AAG-A 22301028-AAG-A **
18738188-C-A 16626308-C-A **
22352500-T-G 20190614-T-G DYZ19 **
23723544-C-A 21561658-C-A 27×AT**
28614844-C-CT 26468697-C-CT 13×T**
13462304-C-A 11306628-C-A **
22241520-G-C 20079634-G-C DYZ19 **
3147956-G-A 3279915-G-A **
3229147-T-A 3361106-T-A **
4626309-T-A 4758268-T-A **
4100863-C-A 4232822-C-A **
3812127-C-T 3944086-C-T **
3966916-G-T 4098875-G-T **
4016639-C-A 4148598-C-A **
4065297-C-A 4197256-C-A **
4078802-C-A 4210761-C-A **
4081002-C-A 4212961-C-A **
4129673-C-A 4261632-C-A **
3679214-G-T 3811173-G-T **
4195860-T-A 4327819-T-A **
4208991-A-G 4340950-A-G **
4240344-C-A 4372303-C-A **
4271808-C-A 4403767-C-A **
4466832-C-A 4598791-C-A **
4505302-C-A 4637261-C-A **
4557391-C-T 4689350-C-T **
3734353-G-A 3866312-G-A **
3679152-G-T 3811111-G-T **
3250443-C-A 3382402-C-A **
3389601-G-T 3521560-G-T **
3250573-C-G 3382532-C-G **
3250716-C-T 3382675-C-T **
3250719-T-G 3382678-T-G **
3250720-G-T 3382679-G-T **
3334524-G-T 3466483-G-T **
3347093-A-G 3479052-A-G **
3405570-G-A 3537529-G-A **
3654435-A-G 3786394-A-G **
3443764-TTTA-T 3575723-TTTA-T 12×TTA**
3443821-T-C 3575780-T-C **
3559768-T-A 3691727-T-A **
3609805-A-T 3741764-A-T **
3609814-T-G 3741773-T-G **
3626855-T-C 3758814-T-C **
3650905-G-T 3782864-G-T **
7436304-A-G 7568263-A-G **
6647023-AT-A 6778982-AT-A **
7635991-G-A 7767950-G-A **
10673887-C-T **
10763150-C-G **
10763101-C-CCTAA **
10763099-T-TA **
10763098-T-G **
10763081-C-A **
10763016-C-CTTTCA **
10762995-C-CACTG **
10762991-C-A **
10762984-TCCCC-T **
10754921-C-A **
10753260-C-A **
10693822-T-A **
10673919-A-ATTACT **
10673899-A-ATTCTGTTCCT **
10672606-T-C **
10770470-T-G **
10672573-C-A **
10667014-C-CGGGTTA **
10667013-C-CTATT **
10659938-C-A **
10659062-T-A **
10654637-A-T **
10652948-T-C **
10651862-C-T **
10050729-C-A 10213120-C-A **
10050283-C-A 10212674-C-A **
10037794-C-A 10200185-C-A **
10023845-C-A 10186236-C-A **
9997907-C-A 10160298-C-A **
9963326-C-A 10125717-C-A **
10763159-T-A **
10770490-C-A **
9942283-T-A 10104674-T-A **
10887959-T-A **
10964856-C-A **
10964832-C-A **
10968135-C-A **
10962973-C-A **
10958537-A-T **
10935497-C-A **
10935448-A-C **
10935444-T-C **
10929482-C-A **
10924590-C-A **
10924519-C-A **
10921419-T-C **
10919169-A-T **
10916373-A-G **
10875234-C-A **
10770526-T-A **
10868902-C-G **
10868899-A-G **
10863367-A-C **
10860208-C-A **
10833155-C-A **
10819705-C-A **
10819636-C-A **
10818651-C-A **
10813051-C-T **
10811123-T-C **
10801806-C-A **
10796655-T-A **
10794690-C-A **
10781123-A-T **
9942931-C-A 10105322-C-A **
10673912-C-CTATTT **
9891717-C-A 10054108-C-A **
8172711-AG-A 8304670-AG-A **
8811220-C-A 8943179-C-A **
8761652-T-G 8893611-T-G **
8736294-T-A 8868253-T-A **
8736213-A-C 8868172-A-C **
8735074-C-A 8867033-C-A Y87857 **
8698750-C-A 8830709-C-A **
8556313-G-GTTT 8688272-G-GTTT 17×T**
8345911-A-G 8477870-A-G **
8345901-A-G 8477860-A-G **
9822620-A-G 9985011-A-G **
8279893-C-A 8411852-C-A **
8253566-C-A 8385525-C-A **
8172710-G-A 8304669-G-A **
9056948-C-A **
8172709-T-A 8304668-T-A **
8075819-A-C 8207778-A-C **
8075737-G-C 8207696-G-C **
8073981-T-A 8205940-T-A **
8073461-C-A 8205420-C-A **
7990973-C-A 8122932-C-A **
7869198-C-A 8001157-C-A **
7832141-C-CTTTA 7964100-C-CTTTA **
7704564-C-A 7836523-C-A **
7670960-G-A 7802919-G-A **
7664305-C-A 7796264-C-A **
7645181-T-G 7777140-T-G **
9056639-C-A **
8325663-T-G 8457622-T-G **
9397966-C-A 9560357-C-A **
9810922-G-T 9973313-G-T **
9820506-C-CCT 9982897-C-CCT **
9442186-C-A 9604577-C-A **
9173561-T-C 9335952-T-C **
9442343-G-C 9604734-G-C **
9672312-T-A 9834703-T-A IR3_Prx **
9820513-A-C 9982904-A-C **
9807875-C-A 9970266-C-A **
9143245-T-C 9305636-T-C **
9820530-T-C 9982921-T-C **
9075409-T-C 9237800-T-C **
8987665-C-A 9150056-C-A **
9820415-A-T 9982806-A-T **
8976821-A-C 9139212-A-C **
9820498-G-A 9982889-G-A **
13862166-GAACTT-G 11741460-GAACTT-G ***
13723300-A-C 11567624-A-C ***
13723301-T-C 11567625-T-C ***
13866952-C-A 11746246-C-A ***
13853065-G-C 11732359-G-C ***
28792402-C-T 26646255-C-T ***
13842228-G-A 11721522-G-A ***
13838977-CAACAA-C 11718271-CAACAA-C ***
13808679-G-A 11687973-G-A ***
13723302-AAATGG-C 11567626-AAATGG-C 4×AATGG***
13869401-T-A 11748695-T-A ***
16715034-GGT-G 14603154-GGT-G 10×GT***
20757284-CTT-C 18595398-CTT-C P4_Prx 26×T***
13694195-T-A 11538519-T-A ***
23747205-C-T 21585319-C-T 29×T***
25524693-C-CTTTT 23378546-C-CTTTT P1_gr1 33×T***
25323006-G-T 23176859-G-T P2_r1 ***
25166749-A-G 23020602-A-G g1 ***
25166712-ATT-A 23020565-ATT-A g1 30×T***
23196347-T-C 21034461-T-C ***
24830469-C-A 22684322-C-A P3_b2 ***
24244597-TGTC-T 22098450-TGTC-T P3_b1 ***
23761608-A-AAAG,G 21599722-A-AAAG,G 23×AAG***
22505761-G-A 20343875-G-A DYZ19 ***
10987845-A-T ***
22427337-C-A 20265451-C-A DYZ19 ***
22237714-T-A 20075828-T-A DYZ19 ***
22237713-C-T 20075827-C-T DYZ19 ***
23455294-C-T 21293408-C-T ***
23834228-A-ATT 21672342-A-ATT 14×T***
22237712-A-G 20075826-A-G DYZ19 ***
13869408-T-A 11748702-T-A ***
17872657-G-T 15760777-G-T ***
13832601-C-T 11711895-C-T ***
56829781-C-A,G ***
22427321-A-G 20265435-A-G DYZ19 ***
8477577-AT-A 8609536-AT-A 10×T***
25240239-CTT-C 23094092-CTT-C P2_r1 22×T***
26202302-CT-C 24056155-CT-C P1_Y1 16×T***
13453415-A-G 11297739-A-G ***
13451141-T-C 11295465-T-C ***
13447093-ATTCTATTACT-A 11291417-ATTCTATTACT-A ***
9174799-CATAG-C 9337190-CATAG-C ***
28510789-T-C 26364642-T-C ***
13858598-C-T 11737892-C-T ***
6126444-G-C 6258403-G-C ZS5053 ***
26060209-ACT-A 23914062-ACT-A P1_Y1 ***
10020396-G-T 10182787-G-T ***
58974063-A-G 56827916-A-G ***
13485928-T-A 11330252-T-A ***
13867485-T-C 11746779-T-C ***
3641089-C-T 3773048-C-T ***
13842227-A-C 11721521-A-C ***
27883510-C-A 25737363-C-A P1_Y2 ***
28617866-T-A 26471719-T-A ***
13869426-A-ATCGTT 11748720-A-ATCGTT ***
13862173-A-G 11741467-A-G ***
13714034-G-A 11558358-G-A ***
56830213-C-T ***
13868229-T-C 11747523-T-C ***
13714031-G-A 11558355-G-A ***
13869414-G-A 11748708-G-A ***
13600365-AAG-A 11444689-AAG-A ***
58819638-C-T 56771233-G-A ***
13451161-T-A 11295485-T-A ***
13858597-C-A 11737891-C-A ***
13483942-T-A 11328266-T-A ***
13465054-C-A 11309378-C-A ***
13813551-T-C 11692845-T-C ***
13867483-C-T 11746777-C-T ***
28648909-AT-A 26502762-AT-A 8×T***
13459077-ATTTCT-A 11303401-ATTTCT-A ***
25819473-TA-T 23673326-TA-T P1_b3 11×A***
13456499-T-C 11300823-T-C ***
26392991-T-TCTCACACA 24246844-T-TCTCACACA P1_Y1 15×CA***
4902616-A-C 5034575-A-C ***
9422913-C-A 9585304-C-A ***
6650698-C-A 6782657-C-A ***
17895210-A-T 15783330-A-T ***
10034269-G-A 10196660-G-A ***
17942617-TA-T,TAA 15830737-TA-T,TAA 14×A***
18108804-C-A 15996924-C-A ***
18709843-T-C 16597963-T-C ***
17361051-T-C 15249171-T-C ***
13944748-C-A 11824042-C-A ***
19103856-A-T 16991976-A-T ***
13857911-GA-G 11737205-GA-G ***
3640897-T-C 3772856-T-C ***
3640830-CTCCT-C,CTCCTTCCT 3772789-CTCCT-C,CTCCTTCCT 12×TCCT***
19136729-C-A 17024849-C-A ***
13856776-C-A 11736070-C-A ***
14572972-C-A 12461172-C-A ***
6827184-G-T 6959143-G-T ***
10797970-CGTTCC-A,AACTCC ***
8052890-C-A 8184849-C-A ***
15963965-CT-C 13852085-CT-C 9×T***
7724606-T-C 7856565-T-C ***
7776369-G-T 7908328-G-T ***
7866227-A-T 7998186-A-T ***
15605218-AT-A,ATT 13493338-AT-A,ATT 13×T***
8049825-G-A 8181784-G-A ***
16420686-C-A 14308806-C-A ***
6915796-ATTTT-A 7047755-ATTTT-A 22×T***
8668118-C-A 8800077-C-A ***
15306987-AT-A 13195089-AT-A 10×T***
15305810-C-A 13193909-C-A ***
8719039-C-A 8850998-C-A ***
16949975-C-A 14838095-C-A ***
6922735-C-A 7054694-C-A ***
6918595-C-A 7050554-C-A ***
11643757-T-C ***
19492888-C-A 17381008-C-A ***
58974003-T-A 56827856-T-A ***
16962683-TTTCC-T 14850803-TTTCC-T 5×TTCC***
15947951-C-CT 13836071-C-CT 19×T***
22894187-G-T 20732301-G-T ***
22210650-C-G 20048764-C-G ***
22210671-A-G 20048785-A-G ***
17662010-ATGTGTGTG-A 15550130-ATGTGTGTG-A 21×TG***
10964821-G-T ***
8562849-T-A 8694808-T-A ***
13464965-CT-C,CC 11309289-CT-C,CC ***
10989516-C-A ***
10989501-T-A ***
13582582-T-C 11426906-T-C ***
10989499-C-A ***
2763795-C-A 2895754-C-A 8×A***
10989498-C-A ***
10965585-A-G ***
13451187-CCTTT-C,CCACT 11295511-CCTTT-C,CCACT ***
22201031-C-A 20039145-C-A ***
13468263-AG-A 11312587-AG-A ***
11014374-T-C ***
15882483-A-G 13770603-A-G ***
2881529-G-A 3013488-G-A ***
10911769-C-A ***
13296115-C-A 11140439-C-A ***
14835131-TAA-T 12723198-TAA-T 11×A***
13453416-T-G 11297740-T-G ***
13488265-G-T 11332589-G-T ***
10958538-T-A ***
22200888-C-A 20039002-C-A ***
22315953-G-GT 20154067-G-GT DYZ19 ***
22102540-C-A 19940654-C-A ***
22112004-C-CT 19950118-C-CT 9×T***
10958567-A-G ***
22509206-A-C,G 20347320-A-C,G DYZ19 ***
15309739-C-A,CAA 13197843-C-A,CA 41×A***
22200784-C-G,G 20038898-C-G,G ***
9967561-TGTTGA-T 10129952-TGTTGA-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

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