Gifra
BigY2: E18610Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | BigY2 E18610 |
---|---|---|---|---|---|---|---|---|
16918717-G-GA | 14806837-G-GA | 11×A | A* | |||||
13695071-G-A | 11539395-G-A | A* | ||||||
16100716-A-G | 13988836-A-G | P8_Prx | A* | |||||
18293461-G-C | 16181581-G-C | P6_Prx | A* | |||||
20635953-G-A | 18474067-G-A | P4_Prx | A* | |||||
26020971-G-A | 23874824-G-A | P1_Y1 | A* | |||||
26122727-T-C | 23976580-T-C | P1_Y1 | A* | |||||
28817164-T-G | 26671017-T-G | A* | ||||||
28817386-G-A | 26671239-G-A | A* | ||||||
9043531-G-A | 9205922-G-A | BY586 | BY586 | Y | + | |||
18537493-G-A | 16425613-G-A | F2764 | P6_Dst | + | ||||
22475114-G-A | 20313228-G-A | Z12796 | DYZ19 | + | ||||
22474675-C-G | 20312789-C-G | BY223189 | DYZ19 | + | ||||
15417603-GA-G | 13305723-GA-G | 10×A | + | |||||
2807646-C-T | 2939605-C-T | BY56556 | Y | Y | + | |||
6668132-G-A | 6800091-G-A | BY60617 | Y | Y | + | |||
7104858-G-A | 7236817-G-A | BY63347 | Y | Y | + | |||
7284393-T-A | 7416352-T-A | BY64378 | Y | Y | + | |||
7697682-G-A | 7829641-G-A | BY66999 | Y | Y | + | |||
8153090-C-T | 8285049-C-T | BY70346 | Y | Y | + | |||
8364198-A-G | 8496157-A-G | BY72018 | Y | Y | + | |||
8406997-C-A | 8538956-C-A | BY72420 | Y | Y | + | |||
8555291-G-A | 8687250-G-A | BY73981 | Y | Y | + | |||
8737430-A-G | 8869389-A-G | BY75526 | Y | Y | + | |||
8896662-G-A | 9028621-G-A | FGC34196 | Y | + | ||||
9936232-G-A | 10098623-G-A | BY82058 | Y | + | ||||
10626593-A-T | BY83490 | + | ||||||
13803730-G-A | 11683024-G-A | BY47703 | + | |||||
14125396-C-T | 12004690-C-T | BY47135 | Y | Y | + | |||
14606067-A-G | 12494269-A-G | BY96767 | Y | + | ||||
15075806-T-C | 12963896-T-C | BY99600 | Y | Y | + | |||
15327928-C-T | 13216046-C-T | BY100855 | Y | Y | + | |||
17677594-G-A | 15565714-G-A | BY116589 | Y | Y | + | |||
17843435-C-A | 15731555-C-A | BY117732 | Y | Y | + | |||
17874682-A-G | 15762802-A-G | BY118006 | Y | Y | + | |||
18892853-G-A | 16780973-G-A | BY124567 | Y | Y | + | |||
18916930-C-T | 16805050-C-T | BY124788 | Y | Y | + | |||
21657856-A-T | 19495970-A-T | BY134543 | Y | Y | + | |||
22438184-C-T | 20276298-C-T | FT456288 | DYZ19 | + | ||||
22438191-T-C | 20276305-T-C | BY218519 | DYZ19 | + | ||||
22438195-T-A | 20276309-T-A | FT456290 | DYZ19 | + | ||||
22438203-C-G | 20276317-C-G | BY218521 | DYZ19 | + | ||||
22438212-G-A | 20276326-G-A | BY218525 | DYZ19 | + | ||||
22935569-C-T | 20773683-C-T | BY141861 | Y | Y | + | |||
23511062-A-T | 21349176-A-T | BY145888 | Y | Y | + | |||
23634445-A-G | 21472559-A-G | BY146904 | Y | Y | + | |||
7111-C-T | + | |||||||
9880136-T-TTG | 10042527-T-TTG | 14×TG | * | |||||
14379561-TGATA-T | 12258857-TGATA-T | 10×GATA | * | |||||
21406053-AGAAG-A | 19244167-AGAAG-A | 8×GAAG | * | |||||
13452711-CACTA-C | 11297035-CACTA-C | * | ||||||
28784449-T-A | 26638302-T-A | * | ||||||
8620883-TTGTG-T | 8752842-TTGTG-T | br2 | 14×TG | * | ||||
22438214-T-A | 20276328-T-A | DYZ19 | * | |||||
22438223-C-T | 20276337-C-T | DYZ19 | * | |||||
28811423-G-C | 26665276-G-C | * | ||||||
6401008-G-A | 6532967-G-A | FTB18829 | *** | |||||
28818250-C-T | 26672103-C-T | ** | ||||||
17994851-C-CAA | 15882971-C-CAA | P7_Prx | 17×A | ** | ||||
13716537-A-G | 11560861-A-G | ** | ||||||
16108751-C-CT | 13996871-C-CT | P8_Prx | 6×TTTCT | ** | ||||
25954134-T-C | 23807987-T-C | P1_Y1 | ** | |||||
27733748-G-A | 25587601-G-A | P1_Y2 | ** | |||||
17176615-A-AT | 15064735-A-AT | 10×T | ** | |||||
22337669-C-T | 20175783-C-T | DYZ19 | ** | |||||
13716556-A-G | 11560880-A-G | ** | ||||||
2708411-CGAGAGA-C | 2840370-CGAGAGA-C | 23×GA | ** | |||||
6403043-C-G | 6535002-C-G | FT18438 | ** | |||||
6403048-T-C | 6535007-T-C | FT18439 | ** | |||||
19309460-T-C | 17197580-T-C | A9625 | 11×AC | ** | ||||
22097200-C-A | 19935314-C-A | ** | ||||||
58981966-C-A | 56835819-C-A | ** | ||||||
28802688-G-T | 26656541-G-T | ** | ||||||
14451972-C-A | 12331245-C-A | FT180004 | ** | |||||
14639052-A-T | 12527121-A-T | ** | ||||||
22775007-G-T | 20613121-G-T | ** | ||||||
3550570-AACT-A | 3682529-AACT-A | ** | ||||||
13478187-C-T | 11322511-C-T | ** | ||||||
24283360-G-A | 22137213-G-A | P3_t1 | ** | |||||
18797390-CA-C | 16685510-CA-C | 10×A | ** | |||||
27862643-G-A | 25716496-G-A | P1_Y2 | ** | |||||
10800904-C-T | ** | |||||||
10800911-A-T | FT431807 | ** | ||||||
11010584-C-A | ** | |||||||
11010588-C-G | ** | |||||||
11010603-C-G | ** | |||||||
10870644-T-C | BY83925 | ** | ||||||
18873849-C-A | 16761969-C-A | ** | ||||||
19293770-C-A | 17181890-C-A | 29×A | ** | |||||
10748309-G-T | ** | |||||||
10894747-T-A | ** | |||||||
10894757-T-C | ** | |||||||
10984541-A-T | ** | |||||||
10769466-A-G | ** | |||||||
10787509-G-C | ** | |||||||
10787511-A-C | ** | |||||||
20511004-G-T | 18349118-G-T | P5_Dst | ** | |||||
11016401-C-T | ** | |||||||
11016401-CCACTG-C | ** | |||||||
10754867-C-G | ** | |||||||
10754873-T-A | ** | |||||||
11000450-T-C | ** | |||||||
10865820-CT-C | ** | |||||||
10894739-C-G | ** | |||||||
10825643-T-A | ** | |||||||
10745005-C-T | ** | |||||||
10950044-A-C | ** | |||||||
10950049-G-C | ** | |||||||
10889555-A-T | ** | |||||||
10868027-CTCCATCCAT-C | ** | |||||||
13859378-TGACATG-T | 11738672-TGACATG-T | ** | ||||||
10932446-C-A | ** | |||||||
15400167-C-CAA | 13288287-C-CAA | 14×A | ** | |||||
10775844-T-C | ** | |||||||
10775845-C-A | ** | |||||||
10663431-A-T | ** | |||||||
10827636-A-G | ** | |||||||
10850611-A-G | ** | |||||||
10850617-T-C | ** | |||||||
10850621-T-A | ** | |||||||
10850622-A-C | ** | |||||||
10850627-G-A | ** | |||||||
10850635-C-T | ** | |||||||
10850639-A-C | ** | |||||||
11020128-T-C | FT271026 | ** | ||||||
6303651-T-G | 6435610-T-G | IR3_Dst | ** | |||||
10827541-A-T | ** | |||||||
10827556-A-T | ** | |||||||
27847933-T-TC | 25701786-T-TC | P1_Y2 | ** | |||||
10748261-C-T | ** | |||||||
10686696-T-C | ** | |||||||
11021264-G-C | ** | |||||||
10925672-C-T | ** | |||||||
11010518-T-C | ** | |||||||
11010528-T-C | ** | |||||||
22167224-CA-C | 20005338-CA-C | 29×A | ** | |||||
10669520-A-G | ** | |||||||
10795877-A-C | ** | |||||||
10795918-CTGTGT-C | ** | |||||||
10795942-A-T | ** | |||||||
17876459-GT-G | 15764579-GT-G | 10×T | ** | |||||
10801637-C-T | ** | |||||||
11010530-A-G | ** | |||||||
11010541-TTCAAA-T | ** | |||||||
11010560-AGTCCG-A | ** | |||||||
11010578-AC-A | ** | |||||||
18344531-GT-G | 16232651-GT-G | P6_Prx | ** | |||||
11017289-T-C | ** | |||||||
10801673-A-AATTCG | ** | |||||||
10801693-A-G | ** | |||||||
11001881-C-T | ** | |||||||
10748308-T-A | ** | |||||||
10787502-T-A | ** | |||||||
11022187-C-A | ** | |||||||
10748289-T-C | ** | |||||||
11020143-T-C | ** | |||||||
14491360-C-A | 12379557-C-A | ** | ||||||
10772680-C-A | ** | |||||||
10842520-C-T | ** | |||||||
16305923-TCA-T | 14194043-TCA-T | ** | ||||||
10949268-G-C | ** | |||||||
10949270-A-T | ** | |||||||
10744229-T-C | ** | |||||||
10865841-T-C | FT268340 | ** | ||||||
10865842-C-G | ** | |||||||
10809554-T-G | ** | |||||||
23997460-C-A | 21851313-C-A | FT244429 | ** | |||||
7414276-TC-T | 7546235-TC-T | ** | ||||||
2746052-G-A | 2878011-G-A | ** | ||||||
4957838-G-T | 5089797-G-T | ** | ||||||
10808879-C-T | ** | |||||||
10820342-T-A | ** | |||||||
10925661-T-C | ** | |||||||
11021254-A-C | ** | |||||||
10754910-TCCACG-T | ** | |||||||
10924418-A-T | ** | |||||||
10942432-T-G | ** | |||||||
10995811-C-A | ** | |||||||
27862583-AGG-A | 25716436-AGG-A | P1_Y2 | ** | |||||
10763008-T-A | ** | |||||||
11019421-C-CTCTAA | ** | |||||||
11029400-G-C | ** | |||||||
16102027-TG-T | 13990147-TG-T | P8_Prx | ** | |||||
28612202-C-A | 26466055-C-A | ** | ||||||
28531302-C-A | 26385155-C-A | ** | ||||||
10772703-T-C | ** | |||||||
36608-T-A | ** | |||||||
13716507-C-T | 11560831-C-T | ** | ||||||
13716529-A-AT | 11560853-A-AT | ** | ||||||
10655895-G-GTTCCA | ** | |||||||
18465508-T-A | 16353628-T-A | P6_Dst | ** | |||||
25931652-T-A | 23785505-T-A | P1_Y1 | 8×A | ** | ||||
10925652-T-A | ** | |||||||
56846540-C-A | ** | |||||||
11021280-AACT-A | ** | |||||||
56834635-C-A | ** | |||||||
10747032-C-A | ** | |||||||
10923570-A-T | ** | |||||||
10996228-G-T | ** | |||||||
10767869-T-A | ** | |||||||
10767887-A-T | ** | |||||||
10767907-A-ACG | ** | |||||||
10767934-T-TGCACA | ** | |||||||
10808894-T-A | ** | |||||||
10889532-C-T | ** | |||||||
10925646-T-C | ** | |||||||
17794302-C-A | 15682422-C-A | ** | ||||||
13446539-C-G | 11290863-C-G | ** | ||||||
10866238-C-A | ** | |||||||
10689193-A-C | ** | |||||||
10669530-A-ACTCTATTCCACACAT | ** | |||||||
10669538-C-T | ** | |||||||
21182439-C-A | 19020553-C-A | ** | ||||||
10689179-A-T | ** | |||||||
10995771-A-G | ** | |||||||
10949505-A-C | ** | |||||||
24303247-C-A | 22157100-C-A | P3_t1 | ** | |||||
19577630-A-AC | 17465750-A-AC | P5_Prx | ** | |||||
3437039-G-T | 3568998-G-T | ** | ||||||
25964917-T-G | 23818770-T-G | P1_Y1 | ** | |||||
7004-C-A | ** | |||||||
13623417-C-CA | 11467741-C-CA | 10×A | ** | |||||
23455-G-A | ** | |||||||
28802763-G-T | 26656616-G-T | ** | ||||||
13474544-G-GT | 11318868-G-GT | ** | ||||||
13474547-GC-G | 11318871-GC-G | ** | ||||||
18194500-C-A | 16082620-C-A | ** | ||||||
20771740-T-A | 18609854-T-A | P4_Prx | ** | |||||
11020120-C-T | ** | |||||||
11020145-C-A | ** | |||||||
10760452-T-C | ** | |||||||
10760455-C-T | ** | |||||||
10760458-T-C | ** | |||||||
10792657-A-C | FT431405 | ** | ||||||
15338904-C-A | 13227022-C-A | ** | ||||||
8854361-C-A | 8986320-C-A | ** | ||||||
6784516-A-C | 6916475-A-C | ** | ||||||
22176240-C-A | 20014354-C-A | ** | ||||||
7157088-G-T | 7289047-G-T | ** | ||||||
10925679-C-T | ** | |||||||
10925690-A-T | ** | |||||||
14517698-C-A | 12405899-C-A | ** | ||||||
10868080-CGTCCAT-C | ** | |||||||
28461593-C-A | 26315446-C-A | ** | ||||||
13324766-C-A | 11169090-C-A | ** | ||||||
13722703-G-T | 11567027-G-T | ** | ||||||
11037075-A-T | ** | |||||||
21691893-C-A | 19530007-C-A | ** | ||||||
8214036-C-A | 8345995-C-A | ** | ||||||
56756886-A-T | ** | |||||||
18963854-C-A | 16851974-C-A | ** | ||||||
20067115-A-AG | 17955235-A-AG | P5_Dst | ** | |||||
10847145-G-T | ** | |||||||
8389594-TGA-T | 8521553-TGA-T | ** | ||||||
10994648-C-A | ** | |||||||
11037085-C-CTCGAT | ** | |||||||
11037092-C-G | ** | |||||||
14981982-C-A | 12870050-C-A | ** | ||||||
10829087-C-A | ** | |||||||
10888085-T-A | ** | |||||||
10888117-G-A | ** | |||||||
10888119-T-C | ** | |||||||
10686690-C-G | ** | |||||||
10925634-C-G | ** | |||||||
10767878-T-A | ** | |||||||
10767905-T-TCAG | ** | |||||||
21296748-G-T | 19134862-G-T | ** | ||||||
10744239-T-G | ** | |||||||
10763015-C-CCATTA | ** | |||||||
11029412-A-C | ** | |||||||
10800604-C-A | ** | |||||||
7134181-C-A | 7266140-C-A | ** | ||||||
10767680-C-T | ** | |||||||
10837897-G-T | ** | |||||||
10889554-C-A | ** | |||||||
5441506-G-T | 5573465-G-T | ** | ||||||
36605-C-A | ** | |||||||
10949565-T-C | ** | |||||||
10808930-A-C | ** | |||||||
10655842-G-T | ** | |||||||
16981271-C-A | 14869391-C-A | ** | ||||||
10772663-T-C | ** | |||||||
8379414-G-T | 8511373-G-T | FGC64052 | ** | |||||
7996909-C-A | 8128868-C-A | ** | ||||||
3759346-C-A | 3891305-C-A | ** | ||||||
10949280-C-T | ** | |||||||
10949283-C-A | ** | |||||||
10949315-C-T | ** | |||||||
6305845-C-A | 6437804-C-A | IR3_Dst | ** | |||||
10925669-C-A | ** | |||||||
10925676-T-A | ** | |||||||
10824800-T-C | ** | |||||||
2684024-T-C | 2815983-T-C | ** | ||||||
22809762-C-A | 20647876-C-A | ** | ||||||
21827910-C-A | 19666024-C-A | FGC12409 | FT48281 | ** | ||||
16108760-CT-C | 13996880-CT-C | P8_Prx | ** | |||||
22775003-T-C | 20613117-T-C | ** | ||||||
14279668-C-A | 12158962-C-A | ** | ||||||
20603907-G-A | 18442021-G-A | P5_Dst | ** | |||||
19448382-C-A | 17336502-C-A | ** | ||||||
3836330-C-A | 3968289-C-A | ** | ||||||
6036915-C-A | 6168874-C-A | ** | ||||||
22660716-C-A | 20498830-C-A | ** | ||||||
10659884-C-A | ** | |||||||
11035351-G-C | ** | |||||||
10810985-C-T | ** | |||||||
10811017-C-G | ** | |||||||
16001836-G-T | 13889956-G-T | ** | ||||||
10976932-C-T | ** | |||||||
11018856-C-A | ** | |||||||
10059455-C-A | 10221846-C-A | ** | ||||||
15542040-A-G | 13430160-A-G | ** | ||||||
14517670-C-A | 12405871-C-A | ** | ||||||
28714338-C-A | 26568191-C-A | ** | ||||||
14910798-ATTTTT-A | 12798865-ATTTTT-A | 21×T | ** | |||||
8730912-C-G | 8862871-C-G | ** | ||||||
13623443-C-A | 11467767-C-A | ** | ||||||
10744277-C-T | ** | |||||||
10772669-T-C | ** | |||||||
10772670-C-A | ** | |||||||
10772672-A-T | ** | |||||||
10772685-G-T | ** | |||||||
10995771-ATCGAC-A | ** | |||||||
16952598-C-A | 14840718-C-A | ** | ||||||
28792467-G-A | 26646320-G-A | ** | ||||||
19071778-C-A | 16959898-C-A | ** | ||||||
10803942-A-T | ** | |||||||
10803988-CTTTGA-C | ** | |||||||
4951603-T-G | 5083562-T-G | ** | ||||||
27423515-G-T | 25277368-G-T | P1_g3 | 24×TA | ** | ||||
19839641-AAG-A | 17727761-AAG-A | P5_Prx | ** | |||||
28776326-C-A | 26630179-C-A | ** | ||||||
10809566-T-C | ** | |||||||
16659001-C-A | 14547121-C-A | ** | ||||||
10773274-C-A | ** | |||||||
7753277-G-T | 7885236-G-T | ** | ||||||
7167075-A-C | 7299034-A-C | ** | ||||||
10758004-C-G | ** | |||||||
21139568-C-T | 18977682-C-T | ** | ||||||
13313925-A-C | 11158249-A-C | ** | ||||||
17503264-C-A | 15391384-C-A | ** | ||||||
11008825-C-A | ** | |||||||
7313620-G-A | 7445579-G-A | ** | ||||||
10889544-T-A | ** | |||||||
18925037-G-T | 16813157-G-T | ** | ||||||
10973891-T-C | ** | |||||||
10808615-CCA-T | ** | |||||||
2857220-A-T | 2989179-A-T | ** | ||||||
3106827-A-G | 3238786-A-G | ** | ||||||
3108343-G-A | 3240302-G-A | ** | ||||||
3203141-G-T | 3335100-G-T | ** | ||||||
3260023-G-T | 3391982-G-T | ** | ||||||
3399082-C-CT | 3531041-C-CT | 8×T | ** | |||||
3545915-T-G | 3677874-T-G | FTB16140 | ** | |||||
3637212-A-G | 3769171-A-G | ** | ||||||
3951452-G-T | 4083411-G-T | ** | ||||||
3979796-G-T | 4111755-G-T | ** | ||||||
4244644-A-C | 4376603-A-C | ** | ||||||
4315544-G-T | 4447503-G-T | ** | ||||||
4337902-G-A | 4469861-G-A | ** | ||||||
4471452-AG-A | 4603411-AG-A | ** | ||||||
4547901-A-T | 4679860-A-T | ** | ||||||
4547922-G-T | 4679881-G-T | ** | ||||||
4810455-G-T | 4942414-G-T | ** | ||||||
4925229-G-A | 5057188-G-A | ** | ||||||
5216691-C-A | 5348650-C-A | ** | ||||||
5256537-C-A | 5388496-C-A | ** | ||||||
5292174-A-G | 5424133-A-G | ** | ||||||
5458540-T-C | 5590499-T-C | ** | ||||||
5539178-G-T | 5671137-G-T | ** | ||||||
5598047-C-A | 5730006-C-A | ** | ||||||
5617488-G-T | 5749447-G-T | ** | ||||||
5796149-C-A | 5928108-C-A | ** | ||||||
5858487-C-T | 5990446-C-T | ** | ||||||
5869525-A-G | 6001484-A-G | ** | ||||||
6191129-T-G | 6323088-T-G | IR3_Dst | ** | |||||
6211332-C-T | 6343291-C-T | IR3_Dst | ** | |||||
6247987-C-CAA | 6379946-C-CAA | IR3_Dst | ** | |||||
6303737-C-A | 6435696-C-A | IR3_Dst | ** | |||||
6618798-C-A | 6750757-C-A | ** | ||||||
6765761-C-A | 6897720-C-A | ** | ||||||
7054166-G-T | 7186125-G-T | ** | ||||||
7108575-G-T | 7240534-G-T | ** | ||||||
7167097-A-C | 7299056-A-C | ** | ||||||
7180001-C-A | 7311960-C-A | ** | ||||||
7197477-C-A | 7329436-C-A | ** | ||||||
7218287-C-T | 7350246-C-T | ** | ||||||
7238932-A-G | 7370891-A-G | ** | ||||||
7255006-GCCAT-G | 7386965-GCCAT-G | ** | ||||||
7304609-T-G | 7436568-T-G | ** | ||||||
7313611-TG-T | 7445570-TG-T | ** | ||||||
7342348-G-T | 7474307-G-T | ** | ||||||
7428207-A-G | 7560166-A-G | ** | ||||||
7896692-C-A | 8028651-C-A | ** | ||||||
8045320-AT-A | 8177279-AT-A | ** | ||||||
8379383-C-A | 8511342-C-A | 8×T | ** | |||||
8379394-G-T | 8511353-G-T | ** | ||||||
8481057-T-A | 8613016-T-A | ** | ||||||
8673911-C-A | 8805870-C-A | ** | ||||||
8732130-G-T | 8864089-G-T | ** | ||||||
8733469-C-A | 8865428-C-A | ** | ||||||
8822594-A-G | 8954553-A-G | ** | ||||||
8850982-C-A | 8982941-C-A | ** | ||||||
9559412-G-T | 9721803-G-T | IR3_Prx | ** | |||||
9640865-C-A | 9803256-C-A | IR3_Prx | ** | |||||
9645372-C-T | 9807763-C-T | FT49970 | IR3_Prx | ** | ||||
9646959-C-A | 9809350-C-A | IR3_Prx | ** | |||||
9648839-A-G | 9811230-A-G | IR3_Prx | ** | |||||
9930605-T-G | 10092996-T-G | ** | ||||||
10684080-A-C | ** | |||||||
10689185-C-T | ** | |||||||
10752265-A-C | ** | |||||||
10763731-C-A | ** | |||||||
10773763-G-A | ** | |||||||
10775864-GGATTC-G | ** | |||||||
10776623-A-G | ** | |||||||
10779019-T-G | ** | |||||||
10782586-C-A | ** | |||||||
10783281-C-A | ** | |||||||
10789319-C-G | ** | |||||||
10792698-C-CACTAT | ** | |||||||
10792702-C-G | ** | |||||||
10792707-CAACTCCACTT-C | ** | |||||||
10799496-T-A | ** | |||||||
10801422-C-A | ** | |||||||
10803955-C-CAATCCACGT | ** | |||||||
10804012-A-G | ** | |||||||
10808886-A-C | ** | |||||||
10808887-T-A | ** | |||||||
10808899-A-C | ** | |||||||
10808935-T-C | ** | |||||||
10809576-TTC-T | ** | |||||||
10825648-A-T | ** | |||||||
10838924-C-A | ** | |||||||
10842125-T-G | ** | |||||||
10846915-T-A | ** | |||||||
10852202-C-A | ** | |||||||
10856350-C-A | ** | |||||||
10867411-C-A | ** | |||||||
10868049-C-T | FT65888 | ** | ||||||
10889579-C-G | ** | |||||||
10911244-A-C | ** | |||||||
10911255-A-G | ** | |||||||
10911266-T-A | ** | |||||||
10924387-CACTTT-C | ** | |||||||
10939921-A-C | ** | |||||||
10939933-T-A | ** | |||||||
10942443-C-T | ** | |||||||
10942445-G-A | ** | |||||||
10942448-C-CA | ** | |||||||
10942452-G-C | ** | |||||||
10942461-C-G | ** | |||||||
10949210-T-G | ** | |||||||
10959060-C-A | ** | |||||||
10963397-C-A | ** | |||||||
10969681-G-A | ** | |||||||
10980012-T-G | ** | |||||||
10982443-C-A | ** | |||||||
10991341-A-G | ** | |||||||
10995565-C-T | ** | |||||||
11008269-C-A | ** | |||||||
11008553-T-G | ** | |||||||
11008820-C-A | ** | |||||||
11013800-A-T | ** | |||||||
11020133-T-G | ** | |||||||
11026893-C-A | ** | |||||||
11026907-TCCTCTC-T | ** | |||||||
11026916-A-AC | ** | |||||||
13206344-A-T | 11050668-A-T | ** | ||||||
13217117-G-A | 11061441-G-A | ** | ||||||
13328769-G-T | 11173093-G-T | ** | ||||||
13459515-C-T | 11303839-C-T | ** | ||||||
13573408-A-G | 11417732-A-G | ** | ||||||
13575498-G-A | 11419822-G-A | ** | ||||||
13612648-A-G | 11456972-A-G | ** | ||||||
13696913-A-G | 11541237-A-G | ** | ||||||
13696942-A-T | 11541266-A-T | ** | ||||||
13722668-G-A | 11566992-G-A | ** | ||||||
11646313-G-T | ** | |||||||
11652291-C-A | ** | |||||||
11656608-C-T | FT450542 | ** | ||||||
13859587-A-C | 11738881-A-C | ** | ||||||
13862447-ATG-A | 11741741-ATG-A | ** | ||||||
13927122-G-A | 11806416-G-A | ** | ||||||
13928284-G-T | 11807578-G-T | ** | ||||||
13940081-G-A | 11819375-G-A | ** | ||||||
14118235-A-T | 11997529-A-T | ** | ||||||
14218492-G-A | 12097786-G-A | ** | ||||||
14296902-C-A | 12176196-C-A | ** | ||||||
14354436-T-G | 12233731-T-G | ** | ||||||
14357846-C-A | 12237141-C-A | ** | ||||||
14384938-T-C | 12264234-T-C | ** | ||||||
14387424-G-T | 12266720-G-T | ** | ||||||
14425105-G-T | 12304380-G-T | ** | ||||||
14456194-G-A | 12335467-G-A | ** | ||||||
14555079-A-C | 12443280-A-C | ** | ||||||
14557052-C-A | 12445253-C-A | ** | ||||||
14561784-C-A | 12449985-C-A | ** | ||||||
14695847-C-A | 12583913-C-A | ** | ||||||
14912047-C-A | 12800114-C-A | ** | ||||||
15126884-C-A | 13014971-C-A | ** | ||||||
15131675-G-A | 13019762-G-A | ** | ||||||
15685309-C-G | 13573429-C-G | ** | ||||||
15717826-G-T | 13605946-G-T | ** | ||||||
15936840-G-T | 13824960-G-T | ** | ||||||
16045024-T-C | 13933144-T-C | ** | ||||||
16417390-G-A | 14305510-G-A | ** | ||||||
16430457-G-A | 14318577-G-A | ** | ||||||
16445840-C-A | 14333960-C-A | ** | ||||||
16465280-G-A | 14353400-G-A | ** | ||||||
16724700-C-A | 14612820-C-A | ** | ||||||
17014446-C-A | 14902566-C-A | ** | ||||||
17153327-A-T | 15041447-A-T | ** | ||||||
17159588-T-G | 15047708-T-G | ** | ||||||
17224323-G-T | 15112443-G-T | ** | ||||||
17228967-T-C | 15117087-T-C | ** | ||||||
17264885-ATTATAC-A | 15153005-ATTATAC-A | ** | ||||||
17315522-A-G | 15203642-A-G | ** | ||||||
17434004-A-C | 15322124-A-C | ** | ||||||
17486243-A-C | 15374363-A-C | ** | ||||||
17486279-T-G | 15374399-T-G | ** | ||||||
17886096-T-G | 15774216-T-G | ** | ||||||
18187733-G-T | 16075853-G-T | ** | ||||||
18403330-A-C | 16291450-A-C | P6_Gap | ** | |||||
19052135-C-A | 16940255-C-A | ** | ||||||
19298681-A-C | 17186801-A-C | ** | ||||||
19555853-A-G | 17443973-A-G | ** | ||||||
19586694-T-G | 17474814-T-G | P5_Prx | ** | |||||
19624614-A-C | 17512734-A-C | P5_Prx | ** | |||||
19774093-A-AC | 17662213-A-AC | P5_Prx | ** | |||||
19926931-C-G | 17815051-C-G | P5_Prx | ** | |||||
19947705-C-T | 17835825-C-T | P5_Prx | ** | |||||
20809565-C-A | 18647679-C-A | P4_Gap | ** | |||||
20936438-G-T | 18774552-G-T | P4_Dst | ** | |||||
21073223-C-A | 18911337-C-A | ** | ||||||
21108798-C-A | 18946912-C-A | ** | ||||||
21120303-G-T | 18958417-G-T | ** | ||||||
21207580-T-C | 19045694-T-C | ** | ||||||
21235020-A-G | 19073134-A-G | ** | ||||||
21281131-C-A | 19119245-C-A | ** | ||||||
21381876-C-A | 19219990-C-A | ** | ||||||
21634650-G-T | 19472764-G-T | ** | ||||||
21803490-G-T | 19641604-G-T | ** | ||||||
22123049-C-A | 19961163-C-A | ** | ||||||
22297908-G-A | 20136022-G-A | DYZ19 | ** | |||||
22342130-C-A | 20180244-C-A | DYZ19 | ** | |||||
22592976-T-C | 20431090-T-C | ** | ||||||
22592977-A-C | 20431091-A-C | ** | ||||||
22592978-A-C | 20431092-A-C | ** | ||||||
22639398-C-A | 20477512-C-A | ** | ||||||
22808937-T-G | 20647051-T-G | ** | ||||||
22809722-C-A | 20647836-C-A | ** | ||||||
22950149-T-G | 20788263-T-G | ** | ||||||
22951300-T-A | 20789414-T-A | ** | ||||||
23105022-C-T | 20943136-C-T | ** | ||||||
23272293-C-CTTTCTTTA | 21110407-C-CTTTCTTTA | ** | ||||||
23291258-C-A | 21129372-C-A | ** | ||||||
23838755-T-G | 21676869-T-G | ** | ||||||
21753504-T-C | ** | |||||||
24302853-T-A | 22156706-T-A | P3_t1 | ** | |||||
24611460-G-GTT | 22465313-G-GTT | P3_t2 | ** | |||||
25075841-C-A | 22929694-C-A | g1 | ** | |||||
25533399-C-A | 23387252-C-A | P1_gr1 | ** | |||||
25556081-T-G | 23409934-T-G | P1_gr1 | ** | |||||
26120641-C-G | 23974494-C-G | P1_Y1 | ** | |||||
26120649-A-T | 23974502-A-T | P1_Y1 | ** | |||||
26120662-T-A | 23974515-T-A | P1_Y1 | ** | |||||
27127657-T-A | 24981510-T-A | P1_g3 | 7×CTTC | ** | ||||
27842176-G-T | 25696029-G-T | P1_Y2 | ** | |||||
27997522-A-C | 25851375-A-C | P1_Y2 | ** | |||||
28660660-C-G | 26514513-C-G | ** | ||||||
28700495-C-A | 26554348-C-A | ** | ||||||
28734337-G-T | 26588190-G-T | ** | ||||||
28818227-G-T | 26672080-G-T | ** | ||||||
56756897-T-C | ** | |||||||
56847211-G-C | ** | |||||||
58980727-C-T | 56834580-C-T | *** | ||||||
21190875-CTT-C | 19028989-CTT-C | 13×T | *** | |||||
21365422-CAAA-C | 19203536-CAAA-C | 17×A | *** | |||||
58980815-A-G | 56834668-A-G | *** | ||||||
21084335-G-A | 18922449-G-A | BY50541 | 8×TA | *** | ||||
2752725-CAAAAA-C | 2884684-CAAAAA-C | 18×A | *** | |||||
5073563-AAT-A | 5205522-AAT-A | *** | ||||||
18240079-TTC-T | 16128199-TTC-T | 9×TC | *** | |||||
28788526-A-T | 26642379-A-T | *** | ||||||
14061366-ATTTT-A | 11940660-ATTTT-A | 17×T | *** | |||||
8600023-C-A | 8731982-C-A | FGC13396 | BY16477 | *** | ||||
8013283-G-GT | 8145242-G-GT | 8×T | *** | |||||
16545414-CAAA-C | 14433534-CAAA-C | 24×A | *** | |||||
13474649-G-C | 11318973-G-C | *** | ||||||
13474653-T-G | 11318977-T-G | *** | ||||||
3836708-C-CT | 3968667-C-CT | 10×T | *** | |||||
58977429-T-A,G | 56831282-T-A,G | *** | ||||||
58990196-C-T | 56844049-C-T | *** | ||||||
58981742-G-T | 56835595-G-T | *** | ||||||
13462236-G-T | 11306560-G-T | *** | ||||||
13478159-G-C | 11322483-G-C | *** | ||||||
10878358-C-G | *** | |||||||
10800878-T-G | *** | |||||||
10800880-C-T | *** | |||||||
11034053-C-T | *** | |||||||
11034079-A-T | *** | |||||||
11034082-G-A | *** | |||||||
10800870-C-T | *** | |||||||
7615177-T-TA | 7747136-T-TA | 10×A | *** | |||||
7256093-G-GAA | 7388052-G-GAA | 18×A | *** | |||||
16679099-ATTT-A | 14567219-ATTT-A | 25×T | *** | |||||
13855535-GGA-G | 11734829-GGA-G | *** | ||||||
13462243-C-A | 11306567-C-A | *** | ||||||
10794257-T-C | *** | |||||||
10669478-C-T | *** | |||||||
10804772-T-A | *** | |||||||
10669363-C-A | *** | |||||||
10988515-CATTAC-C,CAATAA | *** | |||||||
10789363-T-G | *** | |||||||
10670837-G-A,C | *** | |||||||
21584330-G-T | 19422444-G-T | *** | ||||||
10686618-T-C | *** | |||||||
10821907-C-A | *** | |||||||
22938812-ATT-A | 20776926-ATT-A | 14×T | *** | |||||
28784446-G-T | 26638299-G-T | *** | ||||||
28784452-A-T | 26638305-A-T | *** | ||||||
56835605-C-T | *** | |||||||
56835607-T-C | *** | |||||||
21905283-CAAAA-C | 19743397-CAAAA-C | 16×A | *** | |||||
10686584-T-A | *** | |||||||
10987823-C-T | *** | |||||||
10755423-A-G,T | *** | |||||||
23476021-G-T | 21314135-G-T | 10×T | *** | |||||
13478244-C-T | 11322568-C-T | *** | ||||||
13856353-G-GAACAC | 11735647-G-GAACAC | *** | ||||||
14557618-G-T | 12445819-G-T | *** | ||||||
10900587-A-T | *** | |||||||
14610578-C-A | 12498780-C-A | *** | ||||||
16767153-CTT-C,CT | 14655273-CTT-C,CT | 17×T | *** | |||||
10023885-ATC-A | 10186276-ATC-A | *** | ||||||
11028183-G-C | *** | |||||||
9956404-C-A | 10118795-C-A | *** | ||||||
11028129-C-T | *** | |||||||
56835573-G-T | *** | |||||||
8498338-C-A | 8630297-C-A | 16×A | *** | |||||
13453230-A-T | 11297554-A-T | *** | ||||||
18688521-C-CAAA | 16576641-C-CAAA | *** | ||||||
6712596-G-T | 6844555-G-T | *** | ||||||
7022180-C-A | 7154139-C-A | *** | ||||||
10937432-ATCAAT-A,ATCCAT | *** | |||||||
10961394-T-A,TGCAGT | *** | |||||||
10989143-ATTCCA-GTTCCA,T | *** | |||||||
14357965-C-A | 12237260-C-A | *** | ||||||
16705025-G-T | 14593145-G-T | *** | ||||||
16888079-AATAAATATAAATATAAATAT-A | 14776199-AATAAATATAAATATAAATAT-A | *** | ||||||
19226616-C-A | 17114736-C-A | *** | ||||||
19449428-GAAAAAAAA-G | 17337548-GAAAAAAAA-G | 23×A | *** | |||||
21202421-C-A | 19040535-C-A | *** | ||||||
22926153-C-CTTT | 20764267-C-CTTT | 13×T | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.