Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > Z195/S355 > Z272 > S450 > Z295/S1217 > ZZ77 > Z216 > S452 > Z697 > Z214 > Z279 > CTS8087 > CTS9164 > CTS2142 > BY3189

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
85359
BigY2
85359
FGC-BigY
PXLNT
24290749-G-A 22144602-G-A BY26438 P3_t1 20×CA***A*
16108756-T-TTTTC 13996876-T-TTTTC P8_Prx A****
20680950-G-C 18519064-G-C P4_Prx ***A****
14435157-C-G 12314430-C-G Y***A*
22282425-A-C 20120539-A-C DYZ19 ***A*
26329863-C-T 24183716-C-T P1_Y1 A*
7293753-AATAG-A 7425712-AATAG-A 5×ATAG++**
18821070-G-A 16709190-G-A FGC35768 YY+++
13667811-GGACTC-G 11512135-GGACTC-G +***
21706279-T-C 19544393-T-C FGC35770 YY+++
21092502-A-G 18930616-A-G YY++**
18986732-T-C 16874852-T-C FGC35769 YY+++
13667816-C-G 11512140-C-G +***
24521773-C-T 22375626-C-T FGC35772 +++
13667809-ATGGAC-A 11512133-ATGGAC-A +
22271724-G-T 20109838-G-T BY1915 DYZ19 +****
9515277-C-A 9677668-C-A ++***
8095657-G-C 8227616-G-C Y1933 FGC2483 YY+++
22479790-A-T 20317904-A-T FGC35771 DYZ19 ++*
22895905-G-A 20734019-G-A YY++***
13667802-AAATAG-A 11512126-AAATAG-A ++***
13450591-C-CTCCAT 11294915-C-CTCCAT 4×TCCAT*
6341958-G-T 6473917-G-T A2364 *
6286895-G-T 6418854-G-T IR3_Dst ****
13489967-C-A 11334291-C-A *
3725613-A-T 3857572-A-T **
4522089-T-C 4654048-T-C **
4209102-T-C 4341061-T-C **
4282035-C-A 4413994-C-A **
4370947-C-T 4502906-C-T **
4383586-A-G 4515545-A-G **
4466958-C-A 4598917-C-A **
4509399-T-C 4641358-T-C **
4538334-A-C 4670293-A-C **
4522105-T-A 4654064-T-A **
4138888-G-T 4270847-G-T **
4568581-G-T 4700540-G-T **
4630563-G-T 4762522-G-T **
4735841-GA-G 4867800-GA-G **
4740762-A-C 4872721-A-C **
4863640-G-T 4995599-G-T **
4873728-C-A 5005687-C-A **
4160674-C-A 4292633-C-A **
4109620-G-T 4241579-G-T **
3332718-C-A 3464677-C-A **
3467724-G-A 3599683-G-A **
3825261-C-A 3957220-C-A **
3825268-T-C 3957227-T-C **
3602641-C-A 3734600-C-A **
3598941-C-A 3730900-C-A **
5204377-T-C 5336336-T-C **
3560336-A-G 3692295-A-G **
3825355-C-A 3957314-C-A **
3818090-A-T 3950049-A-T **
3828853-T-C 3960812-T-C **
3834991-T-C 3966950-T-C **
3906469-C-A 4038428-C-A **
3967662-G-T 4099621-G-T **
3987832-C-A 4119791-C-A **
4107841-T-G 4239800-T-G **
3467134-T-A 3599093-T-A **
4888277-CT-C 5020236-CT-C 8×T**
58876794-C-G 56714077-G-C **
5240804-C-T 5372763-C-T **
9220463-G-C 9382854-G-C **
7650332-T-A 7782291-T-A **
7775049-C-A 7907008-C-A **
8043302-A-T 8175261-A-T **
8154043-T-C 8286002-T-C **
8790552-G-T 8922511-G-T **
8815915-C-A 8947874-C-A **
9047471-A-G 9209862-A-G **
9416754-TG-T 9579145-TG-T **
7142265-C-T 7274224-C-T **
9416765-C-T 9579156-C-T **
9497678-TA-T 9660069-TA-T **
9990223-A-G 10152614-A-G **
10054115-A-G 10216506-A-G **
10632683-C-A **
10654605-A-T **
10661070-T-G **
7368986-C-A 7500945-C-A **
7116507-C-A 7248466-C-A **
5267535-AATT-A 5399494-AATT-A **
5844631-C-A 5976590-C-A **
5275495-AT-A 5407454-AT-A **
5426760-C-A 5558719-C-A **
5495425-C-A 5627384-C-A **
5495434-G-T 5627393-G-T 9×T**
5587320-G-T 5719279-G-T **
5754946-C-A 5886905-C-A **
5755030-C-G 5886989-C-G **
5863851-G-A 5995810-G-A **
7063835-G-T 7195794-G-T **
3284179-C-A 3416138-C-A **
6368845-G-A 6500804-G-A **
6505339-T-G 6637298-T-G **
6582845-T-A 6714804-T-A **
6763877-T-C 6895836-T-C **
6763888-A-G 6895847-A-G **
6874922-T-C 7006881-T-C **
3308800-C-A 3440759-C-A **
10689118-C-A **
3267489-C-A 3399448-C-A **
28773003-C-A 26626856-C-A **
11677782-C-A **
10826853-C-T **
10778780-C-A **
24328720-C-A 22182573-C-A P3_t1 **
17218285-G-T 15106405-G-T **
2685665-G-GT 2817624-G-GT **
10040784-C-A 10203175-C-A **
10683038-C-A **
16705680-C-A 14593800-C-A **
4444477-T-C 4576436-T-C **
13487826-C-T 11332150-C-T **
10992632-C-A **
7238938-C-CTT 7370897-C-CTT 13×T**
10760465-A-T **
18201167-C-A 16089287-C-A **
28690935-C-A 26544788-C-A **
10998896-C-A **
15497999-G-T 13386119-G-T **
30042-T-A **
58893596-C-A 56697275-G-T **
28493481-C-T 26347334-C-T *****
28575149-C-A 26429002-C-A *****
28586769-C-A 26440622-C-A ****
28600552-C-T 26454405-C-T *****
28604055-G-T 26457908-G-T *****
28716423-T-A 26570276-T-A *****
58893575-C-T 56697296-G-A **
58977707-C-A 56831560-C-A **
22229585-T-C 20067699-T-C DYZ19 **
58979083-C-A 56832936-C-A *****
59004187-G-A 56858040-G-A *****
17242464-AT-A 15130584-AT-A ****
18864240-CA-C 16752360-CA-C ****
20943477-C-CTT 18781591-C-CTT P4_Dst 12×TG*****
22580068-CTTTTTTTT-C 20418182-CTTTTTTTT-C 19×T*****
13588223-TA-T 11432547-TA-T **
10782966-C-A **
36783-T-C **
3117092-G-T 3249051-G-T **
19121920-CTTTT-C 17010040-CTTTT-C 17×T**
10866099-C-G **
56837898-C-T **
4540158-C-A 4672117-C-A **
13976789-CA-C 11856083-CA-C 8×A**
11667924-G-T **
10664010-G-T **
5563078-G-T 5695037-G-T **
8067445-C-A 8199404-C-A **
10667773-T-A **
5728147-GA-G 5860106-GA-G 9×A**
11036200-C-A **
28698802-C-A 26552655-C-A **
3272634-G-T 3404593-G-T **
10826608-G-C **
3015743-C-A 3147702-C-A **
3078275-A-G 3210234-A-G **
8983579-G-T 9145970-G-T **
17183370-C-A 15071490-C-A **
36788-G-T **
13938148-C-A 11817442-C-A **
14518570-C-A 12406771-C-A **
10673942-G-GAATTC **
10760459-A-G **
26248358-G-T 24102211-G-T P1_Y1 **
10770430-G-T **
14397659-C-A 12276955-C-A **
11038094-C-G **
3131062-C-A 3263021-C-A **
18630658-A-C 16518778-A-C **
19967075-A-C 17855195-A-C P5_Prx **
4898577-CT-C 5030536-CT-C **
13460997-G-A 11305321-G-A **
6510263-C-A 6642222-C-A **
10961466-C-TG **
7312627-A-G 7444586-A-G **
26415896-G-T 24269749-G-T P1_Y1 **
10789009-C-A **
10662001-C-T **
10689088-C-T **
10667384-C-A **
17859660-G-A 15747780-G-A **
17666577-A-T 15554697-A-T **
17666979-T-G 15555099-T-G **
17859623-A-G 15747743-A-G **
17859624-T-G 15747744-T-G **
17859640-A-AC 15747760-A-AC **
17859642-CG-C 15747762-CG-C **
17859648-T-C 15747768-T-C **
18440415-C-CAT 16328535-C-CAT P6_Dst **
16829197-T-C 14717317-T-C **
18566111-C-A 16454231-C-A **
18933547-C-A 16821667-C-A **
19135308-A-T 17023428-A-T **
19202831-C-G 17090951-C-G **
19310738-T-G 17198858-T-G **
19459814-A-G 17347934-A-G **
19622190-C-A 17510310-C-A P5_Prx **
17170340-C-CT 15058460-C-CT **
16658720-T-C 14546840-T-C **
21073428-T-C 18911542-T-C **
15396584-TA-T 13284704-TA-T **
14505915-C-G 12394120-C-G **
14649291-G-T 12537356-G-T **
14716423-G-A 12604490-G-A **
14908458-C-A 12796525-C-A **
15011616-C-A 12899704-C-A **
15141131-A-C 13029218-A-C **
15226145-C-A 13114231-C-A **
15536248-T-C 13424368-T-C **
16575068-A-G 14463188-A-G **
15699608-G-T 13587728-G-T **
15712355-C-A 13600475-C-A **
15769309-T-C 13657429-T-C **
16017799-C-A 13905919-C-A **
16059713-A-G 13947833-A-G **
16324027-C-T 14212147-C-T **
16324033-G-A 14212153-G-A **
16520948-GC-G 14409068-GC-G **
19967071-C-T 17855191-C-T P5_Prx **
21602446-T-A 19440560-T-A **
14396391-A-G 12275687-A-G **
28756199-C-A 26610052-C-A **
28593665-G-A 26447518-G-A **
28613933-C-A 26467786-C-A **
28634211-T-A 26488064-T-A **
28670416-C-A 26524269-C-A **
28725933-T-A 26579786-T-A **
28742451-A-C 26596304-A-C **
28747780-C-A 26601633-C-A **
28775395-G-T 26629248-G-T **
28493481-CA-C 26347334-CA-C **
58876819-G-A 56714052-C-T **
56714115-T-A **
56846497-C-G **
56847625-T-TA **
56847691-G-T **
24289-T-A **
36799-C-CAG **
28558611-G-C 26412464-G-C **
28480878-C-A 26334731-C-A **
22209686-A-C 20047800-A-C **
22696388-T-G 20534502-T-G **
22209829-A-C 20047943-A-C **
22228726-T-A 20066840-T-A DYZ19 **
22228875-A-G 20066989-A-G DYZ19 **
22228889-A-T 20067003-A-T DYZ19 **
22228898-T-C 20067012-T-C DYZ19 **
22228915-T-C 20067029-T-C DYZ19 **
22228937-C-A 20067051-C-A DYZ19 **
23004164-C-T 20842278-C-T **
27952192-C-A 25806045-C-A P1_Y2 **
23036609-C-A 20874723-C-A **
23036702-AT-A 20874816-AT-A **
23126413-A-T 20964527-A-T **
24406487-G-T 22260340-G-T **
25995427-CAT-C 23849280-CAT-C P1_Y1 **
26228577-C-T 24082430-C-T P1_Y1 **
27633836-G-T 25487689-G-T P1_Y2 **
27920506-G-T 25774359-G-T P1_Y2 **
14420472-C-A 12299747-C-A **
14357907-C-A 12237202-C-A **
10667711-A-G **
10817465-A-T **
10770419-T-TA **
10776908-T-A **
10777017-C-A **
10778049-G-T **
10791433-C-A **
10809646-T-C **
10817451-C-T **
10817470-A-ATTG **
10765547-C-G **
10817472-A-AAT **
10817476-C-T **
10820903-C-A **
10822725-C-A **
10822848-C-A **
10826238-T-A **
10826851-C-G **
10765559-G-A **
10765541-T-TCCACA **
10844785-G-T **
10673948-C-CATTTT **
10667731-G-A **
10667738-CA-C **
10667743-T-C **
10667760-C-G **
10667786-C-A **
10667810-A-G **
10667829-C-T **
10683574-C-T **
10763678-T-G **
28479519-A-G 26333372-A-G *****
10689089-A-ACTCCAC **
10689096-TCCATGC-T **
10689106-T-C **
10689126-T-C **
10750205-T-A **
10759935-C-A **
10763667-C-A **
10828585-C-A **
10863972-C-T **
14339300-C-A 12218595-C-A **
13302078-C-A 11146402-C-A **
11003199-C-A **
11004926-C-T **
11009738-C-A **
11025619-G-T **
11031453-G-GTCCAT **
11035182-C-T **
13253719-G-A 11098043-G-A **
11670142-G-T **
10988247-C-A **
11673502-C-A **
11673593-A-C **
13857816-G-A 11737110-G-A **
13870681-C-A 11749975-C-A **
13930015-C-A 11809309-C-A **
14108642-A-G 11987936-A-G **
14230136-C-A 12109430-C-A **
10996268-C-T **
10988174-C-A **
10867727-G-T **
10907299-A-T **
10874405-A-C **
10874407-T-A **
10874425-T-C **
10878117-T-C **
10894140-T-C **
10902725-C-A **
10902758-C-A **
10910118-C-A **
10967442-G-T **
10912628-C-A **
10940012-C-A **
10940521-A-C **
10949748-C-A **
10952513-T-TCCGTC **
10952540-C-T **
10952541-A-G **
10959026-C-A **
28493480-C-T 26347333-C-T *****
36811-C-T **
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13380303-T-C 11224627-T-C **
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15422973-A-T 13311093-A-T *****
22228890-G-T 20067004-G-T DYZ19 **
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22271736-T-C 20109850-T-C BY27242 DYZ19 ******
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14808129-A-G 12696200-A-G *****
14384731-C-A 12264027-C-A *****
19460400-C-A 17348520-C-A *****
2768277-G-T 2900236-G-T *****
13604936-C-A 11449260-C-A ***
13460560-A-T 11304884-A-T ***
13461355-A-C 11305679-A-C ***
13556170-C-T 11400494-C-T ***
13494353-C-A 11338677-C-A ***
13466328-T-A 11310652-T-A ***
10669531-T-TTCCATTCCATTCATC ***
13739587-G-T 11583911-G-T ***
13698266-C-T 11542590-C-T ***
10801691-C-CCAATA ***
13708719-T-G 11553043-T-G ***
10778907-A-G ***
13718973-A-T 11563297-A-T ***
13729585-G-A 11573909-G-A ***
13902820-C-A 11782114-C-A ***
10683685-C-A ***
8649770-C-T 8781729-C-T ***
15364020-A-C 13252140-A-C ***
9427859-G-T 9590250-G-T ***
15400222-G-A 13288342-G-A ***
13460572-T-G 11304896-T-G ***
27214064-G-T 25067917-G-T P1_g3 ***
13433212-T-G 11277536-T-G ***
58993919-G-A 56847772-G-A ***
24893388-G-T 22747241-G-T g1 ***
13311828-A-C 11156152-A-C ***
24404599-C-A 22258452-C-A ***
13433744-C-A 11278068-C-A ***
10066882-T-A 10229273-T-A ***
23013509-C-A 20851623-C-A FGC45794 ***
23006916-A-G 20845030-A-G ***
10066965-C-T 10229356-C-T ***
58893626-T-A 56697245-A-T ***
59025397-T-A 56879250-T-A ***
9199163-T-C 9361554-T-C ***
10066871-T-G 10229262-T-G ***
13461116-G-T 11305440-G-T ***
22228851-T-A 20066965-T-A DYZ19 ***
58887352-C-T 56703519-G-A ***
13466338-A-G 11310662-A-G ***
2758748-T-G 2890707-T-G ***
3545459-G-T 3677418-G-T ***
3681479-G-T 3813438-G-T ***
4124042-T-C 4256001-T-C ***
4951426-T-G 5083385-T-G ***
13433762-C-T 11278086-C-T ***
26262626-T-A 24116479-T-A P1_Y1 ***
4951452-T-A 5083411-T-A ***
22285523-C-T 20123637-C-T DYZ19 ***
24671142-CA-C 22524995-CA-C P3_b2 14×A***
19743718-CA-C 17631838-CA-C P5_Prx 13×A***
10066933-T-C 10229324-T-C ***
27684748-T-G 25538601-T-G P1_Y2 ***
56834770-C-A ***
56826954-TTCCATTCCATTAGTT-T,TTCCATTCCA ***
22229069-C-G 20067183-C-G DYZ19 ******
22229079-A-T 20067193-A-T DYZ19 ******
28801480-A-T 26655333-A-T ***
22272154-A-C 20110268-A-C A4008 DYZ19 ***
22319157-A-T 20157271-A-T DYZ19 ******
26286042-T-C 24139895-T-C P1_Y1 ***
25065157-C-T 22919010-C-T g1 ***
25111007-G-A 22964860-G-A g1 ***
25206041-C-G 23059894-C-G g1 ***
26744748-G-A 24598601-G-A P1_g2 ***
26908589-A-G 24762442-A-G P1_r3 ******
9951904-A-G 10114295-A-G ***
22307430-G-T 20145544-G-T DYZ19 ***
13380409-G-T 11224733-G-T ***
13287397-C-A 11131721-C-A ***
58996161-T-C 56850014-T-C ***
4951438-A-C 5083397-A-C ***
5626018-T-A 5757977-T-A ***
13403307-G-A 11247631-G-A ***
10066870-A-T 10229261-A-T ***
9691684-G-T 9854075-G-T IR3_Prx ***
9692087-A-C 9854478-A-C IR3_Prx ***
9731753-G-T 9894144-G-T IR3_Prx ***
9746248-T-G 9908639-T-G ***
9934760-G-T 10097151-G-T ***
9940935-G-A 10103326-G-A ***
9945078-C-G 10107469-C-G ***
16118202-C-A 14006322-C-A P8_Prx ***
10014851-A-G 10177242-A-G ***
10066890-T-G 10229281-T-G ***
9602696-A-G 9765087-A-G IR3_Prx ***
10066929-C-A 10229320-C-A ***
10066950-A-C 10229341-A-C ***
10066969-C-T 10229360-C-T ***
10067006-C-A 10229397-C-A ***
13130394-C-A 10619880-C-A ***
13143401-C-T 10632887-C-T ***
13196809-C-A 11041133-C-A ***
13221971-C-A 11066295-C-A ***
13234370-A-C 11078694-A-C ***
13380428-G-A 11224752-G-A ***
9618178-G-T 9780569-G-T IR3_Prx ***
9601611-C-T 9764002-C-T IR3_Prx ***
5870017-C-A 6001976-C-A ***
15848865-A-AT 13736985-A-AT ***
6105398-A-G 6237357-A-G ***
6139090-G-T 6271049-G-T IR3_Dst ***
6246922-C-T 6378881-C-T IR3_Dst ***
6298794-A-C 6430753-A-C IR3_Dst ***
17859519-C-A 15747639-C-A ***
6298802-G-T 6430761-G-T IR3_Dst ***
6298816-G-C 6430775-G-C IR3_Dst ***
17321167-A-G 15209287-A-G ***
16964286-T-C 14852406-T-C ***
16134507-C-A 14022627-C-A ***
15271055-A-G 13159144-A-G ***
11643722-TTGATT-T,TTGATTCAAC ***
9131152-A-G 9293543-A-G ***
9202367-C-T 9364758-C-T ***
14213653-A-G 12092947-A-G ***
14213651-G-A 12092945-G-A ***
9208907-C-T 9371298-C-T ***
9336913-T-C 9499304-T-C ***
9345443-T-G 9507834-T-G ***
9369169-A-T 9531560-A-T ***
9497302-C-A 9659693-C-A ***
9592629-T-G 9755020-T-G IR3_Prx ***
9945271-T-G 10107662-T-G ***
18447595-C-T 16335715-C-T P6_Dst ***
16170221-C-A 14058341-C-A ***
13739628-GAT-CAA 11583952-GAT-CAA ***
17006254-GTTGTTTC-TTTTTTTT 14894374-GTTGTTTC-TTTTTTTT ***
26541624-G-A 24395477-G-A P1_g2 ***
16099087-CTGTG-C 13987207-CTGTG-C P8_Prx 23×TG***
14604587-CTTC-TTTT 12492789-CTTC-TTTT ***
14071348-ACCCGACT-TCCTGAC 11950642-ACCCGACT-TCCTGAC ***
13859590-GAACAGATTCG-AAACGGACTC 11738884-GAACAGATTCG-AAACGGACTC ***
13846935-GAATGTAT-TCATGGAA 11726229-GAATGTAT-TCATGGAA ***
13846911-TATTT-AATTG 11726205-TATTT-AATTG ***
13846883-CGGAC-TGGAT 11726177-CGGAC-TGGAT ***
13803216-TC-CT 11682510-TC-CT ***
13737573-CAA-GAG 11581897-CAA-GAG ***
17663116-GAC-AAA 15551236-GAC-AAA ***
13700509-TAGCTCCAA-CGGCTTGAC 11544833-TAGCTCCAA-CGGCTTGAC ***
13700417-AC-GT 11544741-AC-GT ***
13698078-GAATTC-G 11542402-GAATTC-G ***
13698058-G-GA 11542382-G-GA ***
13643335-GATGATG-AAAGATT 11487659-GATGATG-AAAGATT ***
13460679-CA-GT 11305003-CA-GT ***
13432987-ATGG-GTTA 11277311-ATGG-GTTA ***
13402691-CT-C 11247015-CT-C ***
13325983-AATCC-TATCT 11170307-AATCC-TATCT ***
13325975-ATT-GTG 11170299-ATT-GTG ***
26541596-T-C 24395449-T-C P1_g2 ***
26505318-T-G 24359171-T-G P1_Y1 ***
13143384-GAGTGC-TAGAGA 10632870-GAGTGC-TAGAGA ***
25361456-CA-C 23215309-CA-C P2_r2 ***
28157500-TCCA-CCCC 26011353-TCCA-CCCC P1_b4 ***
28117258-GTTGATC-TTTTATT 25971111-GTTGATC-TTTTATT P1_b4 ***
27686461-GA-G 25540314-GA-G P1_Y2 14×A***
26880358-ACCA-CCCC 24734211-ACCA-CCCC P1_r3 ***
26541567-TGGT-GGGG 24395420-TGGT-GGGG P1_g2 ***
26267693-TAC-AAA 24121546-TAC-AAA P1_Y1 ***
26248920-T-TAA 24102773-T-TAA P1_Y1 15×A***
26228677-CTTTCTTTCTTTC-TTTTTTTTTTTTT 24082530-CTTTCTTTCTTTC-TTTTTTTTTTTTT P1_Y1 ***
25522496-AGGGT-GGGGG 23376349-AGGGT-GGGGG P1_gr1 ***
25504650-CTT-C 23358503-CTT-C P1_gr1 17×T***
24686387-GTTC-TTTT 22540240-GTTC-TTTT P3_b2 ***
20418843-A-AT 18256957-A-AT P5_Dst ***
24604697-A-AT 22458550-A-AT P3_t2 11×T***
24235500-TGAT-AGAA 22089353-TGAT-AGAA P3_b1 ***
24235457-TAAAG-AAAAA 22089310-TAAAG-AAAAA P3_b1 ***
26495641-T-A 24349494-T-A P1_Y1 ***
22358278-GA-TT 20196392-GA-TT DYZ19 ***
22295951-GG-TT 20134065-GG-TT DYZ19 ***
22271734-TCT-CCC 20109848-TCT-CCC DYZ19 ***
22229643-AGGAA-TGGAG 20067757-AGGAA-TGGAG DYZ19 ***
26495665-G-T 24349518-G-T P1_Y1 ***
20511008-ATTTC-TTTTT 18349122-ATTTC-TTTTT P5_Dst ***
22360234-A-C 20198348-A-C DYZ19 ***
10068695-AAGTTTC-TAGGTTA 10231086-AAGTTTC-TAGGTTA ***
58979306-TCCATTG-T 56833159-TCCATTG-T ***
27914994-G-A 25768847-G-A P1_Y2 ***
27002801-G-T 24856654-G-T P1_r4 ***
27016184-G-T 24870037-G-T P1_r4 ***
27016206-G-T 24870059-G-T P1_r4 ***
27082183-T-G 24936036-T-G P1_r4 ***
28485841-C-A 26339694-C-A ***
27095986-G-T 24949839-G-T P1_r4 ***
28293299-A-C 26147152-A-C P1_b4 ***
28024214-T-G 25878067-T-G P1_Y2 ***
28008063-T-A 25861916-T-A P1_Y2 ***
27981579-G-A 25835432-G-A P1_Y2 ***
27838101-G-T 25691954-G-T P1_Y2 ***
26880459-A-T 24734312-A-T P1_r3 ***
27791428-T-C 25645281-T-C P1_Y2 ***
27733474-G-A 25587327-G-A P1_Y2 ***
27714434-T-C 25568287-T-C P1_Y2 ***
27702118-A-C 25555971-A-C P1_Y2 ***
27618293-C-A 25472146-C-A P1_Y2 ***
27507608-A-G 25361461-A-G P1_Y2 ***
27417739-A-T 25271592-A-T P1_g3 ***
27371279-G-C 25225132-G-C P1_g3 ***
27335447-C-T 25189300-C-T P1_g3 ***
27328411-G-T 25182264-G-T P1_g3 ***
26954907-A-G 24808760-A-G P1_r3 ***
26880351-A-C 24734204-A-C P1_r3 ***
9958028-AT-A 10120419-AT-A ***
10068632-CCCCTC-AACCTT 10231023-CCCCTC-AACCTT ***
9944188-GTCC-CTCT 10106579-GTCC-CTCT ***
9714716-C-CT 9877107-C-CT IR3_Prx 13×T***
9403274-C-CAA 9565665-C-CAA ***
8555570-T-TTTTTG 8687529-T-TTTTTG ***
6403564-ATAT-GTAC 6535523-ATAT-GTAC ***
4951441-ACA-CCC 5083400-ACA-CCC ***
58893626-TA-AT 56697244-TA-AT ***
7534645-AA-C 7666604-AA-C ***
18321446-A-AT 16209566-A-AT P6_Prx 16×T***
13698053-GA-G 11542377-GA-G ***
9302430-A-AC 9464821-A-AC ***
28814964-G-T 26668817-G-T ***
26810734-G-T 24664587-G-T P1_g2 ***
58993348-G-A 56847201-G-A ***
26810744-C-T 24664597-C-T P1_g2 ***
26874693-T-G 24728546-T-G P1_r3 ***
58969434-C-T 56823287-C-T ***
26880195-C-T 24734048-C-T P1_r3 ***
26880345-A-C 24734198-A-C P1_r3 ***
58826822-T-C 56764049-A-G ***
58826816-A-G 56764055-T-C ***
28814967-T-A 26668820-T-A ***
58972096-GCA-CCT 56825949-GCA-CCT ***
58981759-TC-CT 56835612-TC-CT ***
16942196-C-A 14830316-C-A ***
22470020-G-A 20308134-G-A DYZ19 ***
21306519-T-A 19144633-T-A ***
3328029-C-A 3459988-C-A ***
22241222-G-T 20079336-G-T DYZ19 ******
22269851-G-C 20107965-G-C DYZ19 ***
22270357-G-A 20108471-G-A DYZ19 ***
22270538-C-A 20108652-C-A DYZ19 ***
22307441-C-G 20145555-C-G DYZ19 ***
22307454-G-A 20145568-G-A DYZ19 ***
22321360-G-T 20159474-G-T DYZ19 ***
22360257-T-A 20198371-T-A DYZ19 ***
23034480-C-G 20872594-C-G ***
20998234-G-A 18836348-G-A P4_Dst ***
10653294-C-A ***
23096671-C-T 20934785-C-T ***
23096672-A-G 20934786-A-G ***
24192276-T-A 22046129-T-A P3_b1 ***
24264513-C-T 22118366-C-T P3_b1 18×T***
24329954-A-C 22183807-A-C P3_t1 ***
19145470-C-A 17033590-C-A ***
24336793-C-T 22190646-C-T P3_t1 20×T***
24587545-T-G 22441398-T-G P3_t2 ***
14766802-C-T 12654871-C-T ***
21224975-T-C 19063089-T-C ***
20716930-T-A 18555044-T-A P4_Prx ***
24671206-T-C 22525059-T-C P3_b2 ***
19892970-C-T 17781090-C-T P5_Prx ***
17605132-C-A 15493252-C-A ***
18316568-T-G 16204688-T-G P6_Prx ***
18316605-C-T 16204725-C-T P6_Prx 17×T***
27255343-T-C 25109196-T-C P1_g3 ***
18447603-C-T 16335723-C-T P6_Dst ***
18531004-A-G 16419124-A-G P6_Dst ***
18531027-T-C 16419147-T-C P6_Dst ***
19593246-G-T 17481366-G-T P5_Prx ***
19695007-A-C 17583127-A-C P5_Prx ***
19721761-A-C 17609881-A-C P5_Prx ***
20062533-T-G 17950653-T-G P5_Prx ***
20702244-G-T 18540358-G-T P4_Prx ***
20127979-A-G 18016099-A-G P5_Dst ***
20213659-A-T 18051773-A-T P5_Dst ***
20213847-T-C 18051961-T-C P5_Dst ***
20280158-C-T 18118272-C-T P5_Dst ***
20392655-G-A 18230769-G-A P5_Dst ***
20419189-T-C 18257303-T-C P5_Dst ***
20420999-A-C 18259113-A-C P5_Dst ***
20438824-T-A 18276938-T-A P5_Dst ***
20654145-C-T 18492259-C-T P4_Prx ***
20654168-T-G 18492282-T-G P4_Prx ***
24671203-T-C 22525056-T-C P3_b2 ***
24686379-G-T 22540232-G-T P3_b2 ***
58988360-TG-CA 56842213-TG-CA ***
26344161-A-C 24198014-A-C P1_Y1 ***
25468054-C-T 23321907-C-T P2_r2 ***
25472722-T-C 23326575-T-C P2_r2 ***
25677281-A-T 23531134-A-T P1_b3 ***
25727456-G-A 23581309-G-A P1_b3 ***
25727466-G-T 23581319-G-T P1_b3 ***
25781598-C-A 23635451-C-A P1_b3 ***
25841891-G-T 23695744-G-T P1_b3 ***
25899735-T-G 23753588-T-G P1_Y1 ***
26089055-C-A 23942908-C-A P1_Y1 ***
26202302-C-T 24056155-C-T P1_Y1 16×T***
26344361-G-T 24198214-G-T P1_Y1 ***
10664811-A-G ***
26376530-T-A 24230383-T-A P1_Y1 ***
26452976-C-A 24306829-C-A P1_Y1 ***
14609565-T-C 12497767-T-C ***
14609562-G-A 12497764-G-A ***
21365422-CAAAAAA-C 19203536-CAAAAAA-C 17×A***
26481907-T-C 24335760-T-C P1_Y1 ***
58981637-T-TCCCTC 56835490-T-TCCCTC ***
59025396-GT-AA 56879249-GT-AA ***
58996161-TCTT-CCTC 56850014-TCTT-CCTC ***
58988425-CT-AC 56842278-CT-AC ***
17321171-A-G 15209291-A-G ***
25466928-G-T 23320781-G-T P2_r2 ***
24708906-C-A 22562759-C-A P3_b2 ***
25327766-T-C 23181619-T-C P2_r1 ***
24728313-A-C 22582166-A-C P3_b2 ***
24737585-C-A 22591438-C-A P3_b2 ***
24794491-A-G 22648344-A-G P3_b2 ***
24924297-T-A 22778150-T-A g1 ***
24924308-T-G 22778161-T-G g1 ***
25166745-T-G 23020598-T-G g1 ***
25176994-C-T 23030847-C-T g1 ***
25232259-C-G 23086112-C-G P2_r1 ***
25263451-T-G 23117304-T-G P2_r1 ***
25278843-C-T 23132696-C-T P2_r1 ***
25341172-T-G 23195025-T-G P2_r1 ***
25466448-T-G 23320301-T-G P2_r2 ***
25375299-G-T 23229152-G-T P2_r2 ***
25379680-C-T 23233533-C-T P2_r2 ***
25395355-T-C 23249208-T-C P2_r2 ***
25395363-T-C 23249216-T-C P2_r2 ***
25395872-T-A 23249725-T-A P2_r2 ***
25434016-T-G 23287869-T-G P2_r2 ***
25440062-A-T 23293915-A-T P2_r2 ***
25441189-T-A 23295042-T-A P2_r2 ***
25446036-A-T 23299889-A-T P2_r2 ***
25466392-T-A 23320245-T-A P2_r2 ***
13254488-GGGC-AGGT 11098812-GGGC-AGGT ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

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