Brtnik
BigY2: 393991MDKA Birth: Czech Republic
Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | BigY2 393991 |
---|---|---|---|---|---|---|---|---|
22312913-C-G | 20151027-C-G | DYZ19 | A* | |||||
22308602-T-C | 20146716-T-C | DYZ19 | A* | |||||
56834069-T-G | A* | |||||||
58912929-G-A | 56677942-C-T | ** | ||||||
4325957-A-C | 4457916-A-C | ** | ||||||
18964986-C-A | 16853106-C-A | FGC31842 | ** | |||||
14551473-C-A | 12439674-C-A | ** | ||||||
58819680-T-C | 56771191-A-G | ** | ||||||
58986184-C-A | 56840037-C-A | ** | ||||||
13317456-C-G | 11161780-C-G | ** | ||||||
17459485-CAAAAA-C | 15347605-CAAAAA-C | 25×A | ** | |||||
21992963-TAAAAAAA-T | 19831077-TAAAAAAA-T | 23×A | ** | |||||
6792627-TCA-T | 6924586-TCA-T | ** | ||||||
58848082-T-C | 56742789-A-G | ** | ||||||
10801513-A-C | ** | |||||||
28461136-C-A | 26314989-C-A | ** | ||||||
4460579-A-AT | 4592538-A-AT | 10×T | ** | |||||
19011091-C-A | 16899211-C-A | ** | ||||||
19600432-G-T | 17488552-G-T | P5_Prx | ** | |||||
28724387-G-A | 26578240-G-A | ** | ||||||
10982984-T-A | ** | |||||||
13476165-C-A | 11320489-C-A | ** | ||||||
10801404-G-C | ** | |||||||
10892553-C-T | ** | |||||||
10793951-C-T | ** | |||||||
10961388-C-T | ** | |||||||
18108618-C-A | 15996738-C-A | ** | ||||||
10790488-T-C | ** | |||||||
10792769-A-T | BY27027 | ** | ||||||
14934395-A-G | 12822460-A-G | ** | ||||||
15130875-C-A | 13018962-C-A | ** | ||||||
2649801-TCA-T | 2781760-TCA-T | ** | ||||||
10790468-C-A | ** | |||||||
10790512-C-T | ** | |||||||
10790514-A-T | ** | |||||||
10790540-T-TTGCACTATAA | ** | |||||||
10790545-G-C | ** | |||||||
10790552-G-C | ** | |||||||
10859396-G-T | ** | |||||||
17533824-GAAAAAA-G | 15421944-GAAAAAA-G | 21×A | ** | |||||
10760312-T-C | ** | |||||||
27499310-CAA-C | 25353163-CAA-C | P1_Y2 | 30×A | ** | ||||
13461248-A-C | 11305572-A-C | ** | ||||||
10961440-C-G | ** | |||||||
28544888-A-G | 26398741-A-G | ** | ||||||
24283395-C-A | 22137248-C-A | P3_t1 | ** | |||||
10955242-C-G | ** | |||||||
10955255-A-T | ** | |||||||
10955308-T-C | ** | |||||||
15168417-C-A | 13056503-C-A | ** | ||||||
10892522-C-A | ** | |||||||
10652458-A-T | ** | |||||||
15574765-C-A | 13462885-C-A | ** | ||||||
24904721-T-A | 22758574-T-A | g1 | ** | |||||
28801442-GGAGCA-G | 26655295-GGAGCA-G | ** | ||||||
18748976-C-A | 16637096-C-A | ** | ||||||
10688042-C-A | ** | |||||||
7414276-TCAAA-T | 7546235-TCAAA-T | ** | ||||||
10984527-C-T | ** | |||||||
11034891-A-T | ** | |||||||
17012871-C-A | 14900991-C-A | FT297094 | ** | |||||
10877787-A-G | ** | |||||||
10877854-A-T | ** | |||||||
10877864-A-G | ** | |||||||
10955309-T-A | ** | |||||||
10955310-C-A | ** | |||||||
10877133-C-A | ** | |||||||
56850520-G-T | ** | |||||||
3148439-G-T | 3280398-G-T | ** | ||||||
10859992-A-T | ** | |||||||
10876865-T-G | ** | |||||||
10876877-C-A | FT435118 | ** | ||||||
10876889-A-T | ** | |||||||
10876914-T-A | ** | |||||||
10876915-C-T | ** | |||||||
11005237-C-A | ** | |||||||
20872239-T-TC | 18710353-T-TC | P4_Dst | ** | |||||
19231352-G-T | 17119472-G-T | ** | ||||||
21202524-C-A | 19040638-C-A | ** | ||||||
11033313-C-A | ** | |||||||
26282861-G-T | 24136714-G-T | P1_Y1 | ** | |||||
18804474-A-G | 16692594-A-G | BY52016 | 26×AG | ** | ||||
23202864-C-A | 21040978-C-A | ** | ||||||
21493428-C-A | 19331542-C-A | ** | ||||||
8214972-A-G | 8346931-A-G | ** | ||||||
21267796-C-A | 19105910-C-A | ** | ||||||
7870498-C-A | 8002457-C-A | ** | ||||||
10859955-C-T | ** | |||||||
10859963-C-A | ** | |||||||
10859977-G-C | ** | |||||||
10859998-T-C | ** | |||||||
16467401-C-A | 14355521-C-A | ** | ||||||
16719910-G-A | 14608030-G-A | ** | ||||||
14557761-T-C | 12445962-T-C | ** | ||||||
10668630-C-G | ** | |||||||
21207030-C-A | 19045144-C-A | ** | ||||||
9798088-G-T | 9960479-G-T | ** | ||||||
7564051-C-A | 7696010-C-A | ** | ||||||
10668641-C-CATGGA | ** | |||||||
10668680-G-T | ** | |||||||
21738594-C-A | 19576708-C-A | ** | ||||||
28801425-G-T | 26655278-G-T | ** | ||||||
10877570-C-A | ** | |||||||
28801436-T-A | 26655289-T-A | ** | ||||||
28801443-G-A | 26655296-G-A | ** | ||||||
28801459-A-T | 26655312-A-T | ** | ||||||
28724380-T-G | 26578233-T-G | ** | ||||||
19424354-G-T | 17312474-G-T | ** | ||||||
10777628-G-T | ** | |||||||
9381115-G-T | 9543506-G-T | ** | ||||||
13481909-C-A | 11326233-C-A | ** | ||||||
26199589-C-A | 24053442-C-A | P1_Y1 | ** | |||||
10976938-C-T | ** | |||||||
10801426-G-C | ** | |||||||
10981095-C-A | ** | |||||||
23512212-C-A | 21350326-C-A | ** | ||||||
18985855-C-A | 16873975-C-A | ** | ||||||
10844175-T-C | ** | |||||||
7974266-C-A | 8106225-C-A | ** | ||||||
16093050-C-A | 13981170-C-A | ** | ||||||
10785242-C-T | ** | |||||||
10772707-A-T | ** | |||||||
18793549-G-T | 16681669-G-T | ** | ||||||
15585067-C-A | 13473187-C-A | ** | ||||||
7095894-C-A | 7227853-C-A | ** | ||||||
11007994-G-T | ** | |||||||
2788990-G-T | 2920949-G-T | ** | ||||||
16897547-A-G | 14785667-A-G | ** | ||||||
16897561-G-T | 14785681-G-T | ** | ||||||
10847612-C-A | ** | |||||||
21382151-C-A | 19220265-C-A | ** | ||||||
7869102-G-T | 8001061-G-T | ** | ||||||
18564316-C-CTT | 16452436-C-CTT | 19×T | ** | |||||
14241110-C-A | 12120404-C-A | ** | ||||||
10955183-CTCCAT-C | ** | |||||||
56826393-C-T | ** | |||||||
10652467-C-G | ** | |||||||
10987085-ATCATT-A | ** | |||||||
10987093-A-C | ** | |||||||
22122158-C-T | 19960272-C-T | ** | ||||||
22122159-A-G | 19960273-A-G | ** | ||||||
8151302-C-A | 8283261-C-A | FTB2784 | ** | |||||
10786334-G-T | ** | |||||||
10653904-C-A | ** | |||||||
7247933-C-A | 7379892-C-A | ** | ||||||
7195201-C-A | 7327160-C-A | ** | ||||||
23285139-C-A | 21123253-C-A | ** | ||||||
14253281-C-A | 12132575-C-A | ** | ||||||
10974293-C-A | ** | |||||||
7858398-C-A | 7990357-C-A | ** | ||||||
10956522-C-A | ** | |||||||
14934386-G-A | 12822451-G-A | ** | ||||||
16988798-C-A | 14876918-C-A | ** | ||||||
2689652-T-C | 2821611-T-C | ** | ||||||
8850070-C-A | 8982029-C-A | ** | ||||||
18614427-C-A | 16502547-C-A | ** | ||||||
22739714-C-A | 20577828-C-A | ** | ||||||
19283686-C-A | 17171806-C-A | ** | ||||||
10661167-C-T | ** | |||||||
13462347-C-A | 11306671-C-A | ** | ||||||
14934385-T-C | 12822450-T-C | ** | ||||||
14934392-C-T | 12822457-C-T | ** | ||||||
14934402-C-T | 12822467-C-T | ** | ||||||
14934403-A-G | 12822468-A-G | ** | ||||||
5601193-C-A | 5733152-C-A | ** | ||||||
18604958-C-A | 16493078-C-A | ** | ||||||
7415540-C-A | 7547499-C-A | ** | ||||||
14934393-A-G | 12822458-A-G | ** | ||||||
7681818-T-C | 7813777-T-C | ** | ||||||
11026966-T-G | ** | |||||||
10818414-T-G | ** | |||||||
6732672-G-T | 6864631-G-T | ** | ||||||
5426479-C-A | 5558438-C-A | ** | ||||||
2651279-G-T | 2783238-G-T | ** | ||||||
17118393-TTC-T | 15006513-TTC-T | ** | ||||||
11035576-T-C | ** | |||||||
10926565-C-A | ** | |||||||
10995793-C-A | ** | |||||||
4779985-G-T | 4911944-G-T | ** | ||||||
10687133-C-A | ** | |||||||
16514358-T-A | 14402478-T-A | ** | ||||||
9558158-G-T | 9720549-G-T | IR3_Prx | ** | |||||
10985124-C-A | ** | |||||||
2746677-T-A | 2878636-T-A | ** | ||||||
2748448-C-A | 2880407-C-A | ** | ||||||
2806194-A-T | 2938153-A-T | ** | ||||||
2832635-C-A | 2964594-C-A | ** | ||||||
3112229-G-T | 3244188-G-T | ** | ||||||
3501138-C-A | 3633097-C-A | ** | ||||||
3935815-CA-C | 4067774-CA-C | ** | ||||||
4357099-C-A | 4489058-C-A | ** | ||||||
4366224-A-G | 4498183-A-G | ** | ||||||
4371210-C-A | 4503169-C-A | ** | ||||||
4371789-A-G | 4503748-A-G | ** | ||||||
4575663-G-T | 4707622-G-T | ** | ||||||
5164579-G-T | 5296538-G-T | ** | ||||||
5200127-G-A | 5332086-G-A | ** | ||||||
5654539-C-A | 5786498-C-A | FT375322 | ** | |||||
6040105-C-A | 6172064-C-A | ** | ||||||
6486448-C-T | 6618407-C-T | FT273302 | ** | |||||
6792458-T-C | 6924417-T-C | ** | ||||||
6792459-C-CT | 6924418-C-CT | ** | ||||||
6801049-C-A | 6933008-C-A | ** | ||||||
6833348-G-T | 6965307-G-T | ** | ||||||
6875180-C-A | 7007139-C-A | ** | ||||||
6943919-G-T | 7075878-G-T | ** | ||||||
6949311-C-A | 7081270-C-A | ** | ||||||
6952456-T-G | 7084415-T-G | ** | ||||||
6992350-CT-C | 7124309-CT-C | ** | ||||||
6992353-A-AG | 7124312-A-AG | ** | ||||||
7017648-C-A | 7149607-C-A | ** | ||||||
7086669-C-A | 7218628-C-A | ** | ||||||
7137086-C-A | 7269045-C-A | ** | ||||||
7141110-C-A | 7273069-C-A | ** | ||||||
7215930-C-A | 7347889-C-A | ** | ||||||
7246097-C-A | 7378056-C-A | ** | ||||||
7308759-C-A | 7440718-C-A | ** | ||||||
7367347-G-T | 7499306-G-T | ** | ||||||
7507137-C-A | 7639096-C-A | ** | ||||||
7645064-G-T | 7777023-G-T | ** | ||||||
7681819-G-T | 7813778-G-T | ** | ||||||
7933802-A-G | 8065761-A-G | ** | ||||||
8022821-C-A | 8154780-C-A | ** | ||||||
8854117-G-A | 8986076-G-A | ** | ||||||
8911943-A-G | 9043902-A-G | ** | ||||||
9092644-T-G | 9255035-T-G | ** | ||||||
9381109-A-C | 9543500-A-C | ** | ||||||
9381110-G-A | 9543501-G-A | ** | ||||||
9381118-TA-T | 9543509-TA-T | ** | ||||||
9381125-AC-A | 9543516-AC-A | ** | ||||||
9400792-C-A | 9563183-C-A | ** | ||||||
9435066-C-A | 9597457-C-A | ** | ||||||
9524037-ATATATATATATATATATATATATAT-A | 9686428-ATATATATATATATATATATATATAT-A | ** | ||||||
9943348-C-A | 10105739-C-A | ** | ||||||
9943924-G-T | 10106315-G-T | ** | ||||||
9959305-C-A | 10121696-C-A | ** | ||||||
9977829-C-A | 10140220-C-A | ** | ||||||
10017856-T-G | 10180247-T-G | ** | ||||||
10651674-T-G | ** | |||||||
10666854-C-A | ** | |||||||
10746144-G-T | ** | |||||||
10749392-C-A | ** | |||||||
10759317-C-A | ** | |||||||
10783611-C-A | ** | |||||||
10801398-A-G | ** | |||||||
10801423-A-T | ** | |||||||
10824144-T-A | ** | |||||||
10826726-C-A | ** | |||||||
10834450-C-A | ** | |||||||
10840909-C-A | ** | |||||||
10871057-C-A | ** | |||||||
10876615-C-A | ** | |||||||
10879551-C-A | ** | |||||||
10900167-C-A | ** | |||||||
10910035-C-A | ** | |||||||
10932281-T-C | ** | |||||||
10940943-T-G | ** | |||||||
10944620-A-T | ** | |||||||
11001539-C-A | ** | |||||||
11018454-C-A | ** | |||||||
11027235-C-A | ** | |||||||
11035573-C-A | ** | |||||||
11035578-T-G | ** | |||||||
11035593-C-G | ** | |||||||
13296160-A-T | 11140484-A-T | ** | ||||||
13462334-C-G | 11306658-C-G | ** | ||||||
13476347-C-A | 11320671-C-A | ** | ||||||
13855261-G-T | 11734555-G-T | ** | ||||||
13866919-GGAAA-G | 11746213-GGAAA-G | ** | ||||||
13871500-C-A | 11750794-C-A | ** | ||||||
14027693-G-C | 11906987-G-C | ** | ||||||
14090354-A-C | 11969648-A-C | ** | ||||||
14175875-CA-C | 12055169-CA-C | ** | ||||||
14208793-C-A | 12088087-C-A | ** | ||||||
14219358-T-C | 12098652-T-C | ** | ||||||
14277148-C-A | 12156442-C-A | ** | ||||||
14328802-AA-T | 12208096-AA-T | ** | ||||||
14346541-C-A | 12225836-C-A | ** | ||||||
14369768-G-T | 12249064-G-T | ** | ||||||
14449420-T-C | 12328693-T-C | ** | ||||||
14519724-C-A | 12407925-C-A | ** | ||||||
14550271-C-A | 12438472-C-A | ** | ||||||
14581286-G-T | 12469486-G-T | ** | ||||||
14745439-G-T | 12633508-G-T | ** | ||||||
14745441-G-T | 12633510-G-T | ** | ||||||
14789280-TGGC-T | 12677351-TGGC-T | ** | ||||||
14819217-A-AT | 12707284-A-AT | ** | ||||||
14825213-C-A | 12713280-C-A | ** | ||||||
14863143-G-T | 12751209-G-T | ** | ||||||
14873050-C-A | 12761120-C-A | ** | ||||||
14900668-TTTTG-T | 12788735-TTTTG-T | ** | ||||||
14934362-C-T | 12822427-C-T | ** | ||||||
14934364-A-G | 12822429-A-G | FT281779 | ** | |||||
14934379-A-G | 12822444-A-G | ** | ||||||
15074529-T-C | 12962619-T-C | ** | ||||||
15097810-T-C | 12985898-T-C | ** | ||||||
15382853-G-T | 13270973-G-T | ** | ||||||
15503250-A-G | 13391370-A-G | ** | ||||||
15726320-C-A | 13614440-C-A | ** | ||||||
15745448-G-T | 13633568-G-T | ** | ||||||
15776129-G-T | 13664249-G-T | ** | ||||||
15909199-C-A | 13797319-C-A | FT451973 | ** | |||||
15957126-C-A | 13845246-C-A | ** | ||||||
15971750-TTG-T | 13859870-TTG-T | ** | ||||||
15975041-T-C | 13863161-T-C | ** | ||||||
16008102-C-A | 13896222-C-A | ** | ||||||
16038270-G-T | 13926390-G-T | ** | ||||||
16038278-C-G | 13926398-C-G | ** | ||||||
16308517-T-G | 14196637-T-G | ** | ||||||
16384542-G-T | 14272662-G-T | ** | ||||||
16531012-A-T | 14419132-A-T | ** | ||||||
16713138-C-A | 14601258-C-A | ** | ||||||
16757313-A-T | 14645433-A-T | ** | ||||||
16871304-C-A | 14759424-C-A | ** | ||||||
16871309-T-A | 14759429-T-A | ** | ||||||
16871315-G-A | 14759435-G-A | ** | ||||||
16871318-C-T | 14759438-C-T | ** | ||||||
16897558-G-T | 14785678-G-T | ** | ||||||
16897563-G-A | 14785683-G-A | ** | ||||||
16913200-C-A | 14801320-C-A | ** | ||||||
17078607-C-A | 14966727-C-A | ** | ||||||
17129242-A-C | 15017362-A-C | ** | ||||||
17181435-C-A | 15069555-C-A | ** | ||||||
17218155-A-G | 15106275-A-G | ** | ||||||
17302205-C-A | 15190325-C-A | ** | ||||||
17373029-C-A | 15261149-C-A | ** | ||||||
17591396-G-T | 15479516-G-T | ** | ||||||
17653834-C-A | 15541954-C-A | ** | ||||||
17956084-C-A | 15844204-C-A | ** | ||||||
18144307-C-A | 16032427-C-A | ** | ||||||
18593324-C-A | 16481444-C-A | ** | ||||||
18635698-C-A | 16523818-C-A | ** | ||||||
18940833-G-A | 16828953-G-A | ** | ||||||
18949939-AAAAG-A | 16838059-AAAAG-A | ** | ||||||
19036919-C-A | 16925039-C-A | ** | ||||||
19092551-T-C | 16980671-T-C | ** | ||||||
19092568-A-C | 16980688-A-C | ** | ||||||
19092569-AG-A | 16980689-AG-A | ** | ||||||
19268500-C-A | 17156620-C-A | ** | ||||||
19409850-C-A | 17297970-C-A | ** | ||||||
19413284-T-A | 17301404-T-A | ** | ||||||
19445413-C-A | 17333533-C-A | ** | ||||||
19502181-C-A | 17390301-C-A | ** | ||||||
19511784-C-A | 17399904-C-A | ** | ||||||
20334912-G-T | 18173026-G-T | P5_Dst | ** | |||||
20807045-C-A | 18645159-C-A | P4_Gap | ** | |||||
20842601-T-A | 18680715-T-A | P4_Dst | ** | |||||
20989082-G-T | 18827196-G-T | P4_Dst | ** | |||||
21029331-C-A | 18867445-C-A | P4_Dst | ** | |||||
21491131-G-T | 19329245-G-T | ** | ||||||
21709314-C-A | 19547428-C-A | ** | ||||||
21985057-C-A | 19823171-C-A | ** | ||||||
22122146-G-A | 19960260-G-A | ** | ||||||
22122164-G-A | 19960278-G-A | ** | ||||||
22122167-G-A | 19960281-G-A | ** | ||||||
22158968-C-A | 19997082-C-A | ** | ||||||
22776590-C-A | 20614704-C-A | ** | ||||||
22804713-C-A | 20642827-C-A | ** | ||||||
22867693-C-A | 20705807-C-A | ** | ||||||
22963690-G-T | 20801804-G-T | ** | ||||||
23126473-G-T | 20964587-G-T | ** | ||||||
23137643-C-A | 20975757-C-A | ** | ||||||
23146072-T-C | 20984186-T-C | ** | ||||||
23189865-G-GAA | 21027979-G-GAA | 13×A | ** | |||||
23286034-C-A | 21124148-C-A | ** | ||||||
23435174-GT-G | 21273288-GT-G | ** | ||||||
23734424-C-A | 21572538-C-A | ** | ||||||
23837020-C-A | 21675134-C-A | ** | ||||||
24003110-G-A | 21856963-G-A | ** | ||||||
24406214-A-G | 22260067-A-G | ** | ||||||
24406854-C-A | 22260707-C-A | ** | ||||||
24450640-T-C | 22304493-T-C | ** | ||||||
26122120-C-A | 23975973-C-A | P1_Y1 | ** | |||||
26352510-G-T | 24206363-G-T | P1_Y1 | ** | |||||
27840485-G-T | 25694338-G-T | P1_Y2 | ** | |||||
28006619-T-C | 25860472-T-C | P1_Y2 | ** | |||||
28468909-T-C | 26322762-T-C | ** | ||||||
28544877-A-T | 26398730-A-T | ** | ||||||
28544880-T-C | 26398733-T-C | ** | ||||||
28544881-G-A | 26398734-G-A | ** | ||||||
28580990-C-A | 26434843-C-A | ** | ||||||
28591670-T-A | 26445523-T-A | ** | ||||||
28771604-G-T | 26625457-G-T | ** | ||||||
56841335-C-A | ** | |||||||
56848380-C-A | ** | |||||||
58976083-A-T | 56829936-A-T | *** | ||||||
21929602-A-G | 19767716-A-G | A20295 | *** | |||||
14604590-CTTTTTT-C | 12492792-CTTTTTT-C | 21×T | *** | |||||
18933368-C-A | 16821488-C-A | *** | ||||||
8628154-CTTT-C | 8760113-CTTT-C | 16×T | *** | |||||
58827346-A-T | 56763525-T-A | *** | ||||||
15056850-C-A | 12944942-C-A | *** | ||||||
10746984-A-G | *** | |||||||
10686713-C-T | *** | |||||||
10935618-A-T | *** | |||||||
13811175-A-T | 11690469-A-T | *** | ||||||
23831278-TG-T | 21669392-TG-T | *** | ||||||
28786001-GAGTGA-G | 26639854-GAGTGA-G | *** | ||||||
15306987-AT-A | 13195089-AT-A | 10×T | *** | |||||
10804779-C-CCTTTT | *** | |||||||
10804794-C-A | *** | |||||||
10980649-C-G | *** | |||||||
13811111-A-AACAAC | 11690405-A-AACAAC | *** | ||||||
14175981-C-A | 12055275-C-A | FT116516 | *** | |||||
28798928-C-A | 26652781-C-A | *** | ||||||
10661353-A-ATTCCATCCCT,T | *** | |||||||
22113187-CAAAAA-C | 19951301-CAAAAA-C | 23×A | *** | |||||
13811116-A-G | 11690410-A-G | *** | ||||||
11643804-G-T | *** | |||||||
13487692-C-G | 11332016-C-G | *** | ||||||
13962015-C-A | 11841309-C-A | *** | ||||||
13844025-G-T | 11723319-G-T | *** | ||||||
14847004-CAAAA-C,CAAA | 12735070-CAAAA-C,CAAA | 20×A | *** | |||||
10906794-G-T | *** | |||||||
14316877-C-A | 12196171-C-A | *** | ||||||
19518293-C-A | 17406413-C-A | *** | ||||||
13480390-T-C | 11324714-T-C | A17124 | *** | |||||
56850492-A-G | *** | |||||||
2790437-C-A | 2922396-C-A | *** | ||||||
9231749-T-C | 9394140-T-C | *** | ||||||
21510076-C-A | 19348190-C-A | *** | ||||||
19415667-C-A | 17303787-C-A | *** | ||||||
10892594-A-G | *** | |||||||
14458558-CAAAAAAAA-C | 12337831-CAAAAAAAA-C | 21×A | *** | |||||
10792568-G-T | *** | |||||||
16445100-C-A | 14333220-C-A | *** | ||||||
10792588-C-T | *** | |||||||
10792595-C-A | *** | |||||||
14180854-C-A | 12060148-C-A | *** | ||||||
13811181-A-T | 11690475-A-T | *** | ||||||
13885857-CTT-C,CT | 11765151-CTT-C,CT | 19×T | *** | |||||
10971974-C-A | *** | |||||||
56724769-G-A,C | *** | |||||||
19108590-C-A | 16996710-C-A | *** | ||||||
23132993-C-A | 20971107-C-A | *** | ||||||
56842335-G-T | *** | |||||||
8344193-G-T | 8476152-G-T | *** | ||||||
20611359-G-T | 18449473-G-T | P5_Dst | *** | |||||
15740711-C-A | 13628831-C-A | *** | ||||||
21604320-C-A | 19442434-C-A | *** | ||||||
7515280-C-A | 7647239-C-A | *** | ||||||
2766076-C-A | 2898035-C-A | *** | ||||||
14946171-C-A | 12834245-C-A | *** | ||||||
56836176-C-A | *** | |||||||
15589496-G-GA | 13477616-G-GA | 9×A | *** | |||||
15138352-C-A | 13026439-C-A | *** | ||||||
9079414-G-T | 9241805-G-T | *** | ||||||
6427444-TA-T | 6559403-TA-T | 8×A | *** | |||||
23311000-C-A | 21149114-C-A | *** | ||||||
28492336-C-A | 26346189-C-A | *** | ||||||
2849967-C-A | 2981926-C-A | FT240952 | *** | |||||
5214265-C-A | 5346224-C-A | 5×TTTA | *** | |||||
6631982-C-A | 6763941-C-A | *** | ||||||
6888709-C-A | 7020668-C-A | *** | ||||||
7101210-C-A | 7233169-C-A | *** | ||||||
7254027-C-A | 7385986-C-A | *** | ||||||
7774082-G-T | 7906041-G-T | *** | ||||||
7823954-C-A | 7955913-C-A | *** | ||||||
7922577-G-T | 8054536-G-T | *** | ||||||
7941694-C-A | 8073653-C-A | *** | ||||||
8019847-A-ATT | 8151806-A-ATT | 12×T | *** | |||||
8156809-C-A | 8288768-C-A | BY193515 | *** | |||||
8171241-T-C | 8303200-T-C | *** | ||||||
8310903-T-C | 8442862-T-C | *** | ||||||
8387849-G-T | 8519808-G-T | *** | ||||||
8719175-C-A | 8851134-C-A | *** | ||||||
8721094-C-A | 8853053-C-A | *** | ||||||
9417753-C-A | 9580144-C-A | *** | ||||||
9458936-C-A | 9621327-C-A | *** | ||||||
9735879-C-A | 9898270-C-A | IR3_Prx | *** | |||||
9736813-G-T | 9899204-G-T | IR3_Prx | *** | |||||
9814043-C-T | 9976434-C-T | *** | ||||||
9856107-AAAAT-A | 10018498-AAAAT-A | 5×AAAT | *** | |||||
9896031-C-T | 10058422-C-T | *** | ||||||
9937934-T-C | 10100325-T-C | *** | ||||||
10012033-C-A | 10174424-C-A | *** | ||||||
10020352-C-A | 10182743-C-A | *** | ||||||
10781304-C-A | *** | |||||||
10826854-C-A | *** | |||||||
10909743-A-G,T | *** | |||||||
10939418-C-A | *** | |||||||
10939687-C-A | *** | |||||||
10989116-G-A,C | *** | |||||||
13224234-C-A | 11068558-C-A | *** | ||||||
13487818-G-C,T | 11332142-G-C,T | *** | ||||||
14319598-T-C | 12198892-T-C | *** | ||||||
14357096-C-A | 12236391-C-A | *** | ||||||
14508892-C-A | 12397097-C-A | *** | ||||||
14696497-C-A | 12584563-C-A | *** | ||||||
14831108-C-A | 12719175-C-A | *** | ||||||
14941074-A-G | 12829148-A-G | *** | ||||||
15074478-C-A | 12962568-C-A | *** | ||||||
15261254-T-C | 13149338-T-C | *** | ||||||
15279168-A-C | 13167267-A-C | *** | ||||||
15382921-G-T | 13271041-G-T | *** | ||||||
15446397-G-T | 13334517-G-T | *** | ||||||
15660897-C-A | 13549017-C-A | *** | ||||||
15746971-C-A | 13635091-C-A | *** | ||||||
15913394-C-A | 13801514-C-A | *** | ||||||
15930840-C-A | 13818960-C-A | *** | ||||||
16213660-C-A | 14101780-C-A | *** | ||||||
16275763-G-T | 14163883-G-T | *** | ||||||
16545476-G-A | 14433596-G-A | *** | ||||||
16678812-C-A | 14566932-C-A | *** | ||||||
16909744-C-A | 14797864-C-A | *** | ||||||
17078546-C-A | 14966666-C-A | *** | ||||||
17331029-C-A | 15219149-C-A | *** | ||||||
17515959-G-A | 15404079-G-A | *** | ||||||
17557944-C-A | 15446064-C-A | *** | ||||||
17677015-C-A | 15565135-C-A | *** | ||||||
17736386-C-A | 15624506-C-A | *** | ||||||
17768020-C-T | 15656140-C-T | *** | ||||||
17953478-C-A | 15841598-C-A | *** | ||||||
18094336-G-T | 15982456-G-T | *** | ||||||
18098785-C-A | 15986905-C-A | *** | ||||||
18206183-C-A | 16094303-C-A | *** | ||||||
18233290-G-A | 16121410-G-A | *** | ||||||
18244414-C-A | 16132534-C-A | *** | ||||||
19054288-C-A | 16942408-C-A | *** | ||||||
19220270-C-A | 17108390-C-A | *** | ||||||
21047782-C-A | 18885896-C-A | *** | ||||||
21515081-C-A | 19353195-C-A | *** | ||||||
21593210-C-A | 19431324-C-A | *** | ||||||
21722218-A-G | 19560332-A-G | *** | ||||||
22010480-GA-G | 19848594-GA-G | *** | ||||||
22514853-C-A | 20352967-C-A | *** | ||||||
22616108-C-A | 20454222-C-A | *** | ||||||
22870947-C-A | 20709061-C-A | *** | ||||||
22876266-C-A | 20714380-C-A | *** | ||||||
22896322-G-GAA | 20734436-G-GAA | *** | ||||||
23415838-C-A | 21253952-C-A | *** | ||||||
23487143-TA-T | 21325257-TA-T | 9×A | *** | |||||
23623076-C-A | 21461190-C-A | *** | ||||||
24514104-C-A | 22367957-C-A | *** | ||||||
24891174-C-A | 22745027-C-A | g1 | *** | |||||
28805149-G-C | 26659002-G-C | *** | ||||||
56850478-A-ACT | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.