Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > Z195/S355 > Z272 > S450 > Z295/S1217 > S25783 > CTS4065 > 15548847GACAC-G > FGC15710 > CTS10029 > FGC29721 > FGC29724

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
5107850-G-A 5239809-G-A FGC34772 +
19300826-T-C 17188946-T-C FGC34777 Y+
16060129-G-A 13948249-G-A FGC34776 Y+
17634317-T-C 15522437-T-C YY+**
14097684-C-T 11976978-C-T FGC34774 YY++
9016286-A-G 9178677-A-G FGC34773 Y++
2824644-G-A 2956603-G-A FGC34771 YY++
13529749-T-G 11374073-T-G FGC24549 *
5594809-A-AT 5726768-A-AT *
19501553-A-T 17389673-A-T FGC34778 YY*
5462508-CCA-C 5594467-CCA-C **
22467199-C-A 20305313-C-A DYZ19 *****
4953820-T-TTG 5085779-T-TTG 16×TG**
19029057-A-C 16917177-A-C ***
18434419-T-A 16322539-T-A P6_Dst ***
22332985-G-A 20171099-G-A DYZ19 ***
22337015-G-T 20175129-G-T DYZ19 ***
22337546-C-T 20175660-C-T DYZ19 ***
22337698-T-A 20175812-T-A DYZ19 ***
22342907-G-C 20181021-G-C DYZ19 ***
22344224-T-A 20182338-T-A DYZ19 ***
22344781-A-T 20182895-A-T DYZ19 ***
22354994-T-A 20193108-T-A DYZ19 ***
22358362-A-T 20196476-A-T DYZ19 ***
22276055-T-A 20114169-T-A DYZ19 ***
22365469-G-C 20203583-G-C DYZ19 ***
22456595-T-A 20294709-T-A DYZ19 ***
22499105-T-C 20337219-T-C DYZ19 ***
22499144-C-G 20337258-C-G DYZ19 ***
22852291-G-A 20690405-G-A ***
24193896-C-T 22047749-C-T P3_b1 ***
24513426-G-A 22367279-G-A ***
24905084-G-T 22758937-G-T g1 ***
25305561-C-T 23159414-C-T P2_r1 ***
17090839-A-T 14978959-A-T 29×T***
22316282-T-A 20154396-T-A DYZ19 ***
18437825-G-A 16325945-G-A P6_Dst ***
18906393-A-T 16794513-A-T ***
22232098-T-C 20070212-T-C DYZ19 ***
18906392-T-A 16794512-T-A ***
19646039-G-A 17534159-G-A P5_Prx ***
19977331-C-T 17865451-C-T P5_Prx ***
20243909-C-T 18082023-C-T P5_Dst ***
20376048-T-C 18214162-T-C P5_Dst ***
20411626-C-T 18249740-C-T P5_Dst ***
20736301-C-A 18574415-C-A P4_Prx ***
20948660-A-T 18786774-A-T P4_Dst ***
22227923-C-A 20066037-C-A DYZ19 ***
22234968-G-T 20073082-G-T DYZ19 ***
18437831-C-T 16325951-C-T P6_Dst ***
22234981-T-C 20073095-T-C DYZ19 ***
22234982-T-G 20073096-T-G DYZ19 ***
22241315-T-C 20079429-T-C DYZ19 ***
18906391-G-A 16794511-G-A 6×TAA***
22265766-C-A 20103880-C-A DYZ19 ***
26533692-C-A 24387545-C-A P1_g2 ***
22268282-C-A 20106396-C-A DYZ19 ***
22273663-A-G 20111777-A-G DYZ19 ***
18618993-T-G 16507113-T-G ***
18437860-G-A 16325980-G-A P6_Dst ***
26444447-C-T 24298300-C-T P1_Y1 ***
22268353-T-C 20106467-T-C DYZ19 ***
27145622-A-T 24999475-A-T P1_g3 ***
9301404-G-GAT 9463795-G-GAT ***
9398653-G-GA 9561044-G-GA ***
9951785-AG-TC 10114176-AG-TC ***
9954526-TTTA-GTTAC 10116917-TTTA-GTTAC ***
13110943-TTTTT-GTTTC 10600429-TTTTT-GTTTC ***
13464459-GCACT-ACACC 11308783-GCACT-ACACC ***
13466743-CCG-ACT 11311067-CCG-ACT ***
13468738-AACTAA-GGCAAT 11313062-AACTAA-GGCAAT ***
13482882-CT-AA 11327206-CT-AA ***
6434921-T-TAAAAA 6566880-T-TAAAAA 20×A***
22251446-GTGGA-CAGGT 20089560-GTGGA-CAGGT DYZ19 ***
22273573-G-GT 20111687-G-GT DYZ19 ***
22344755-CC-AT 20182869-CC-AT DYZ19 ***
22421838-GGTT-ATTG 20259952-GGTT-ATTG DYZ19 ***
24836739-GGAAG-AGAAA 22690592-GGAAG-AGAAA P3_b2 ***
25288465-TCAAAAA-T 23142318-TCAAAAA-T P2_r1 ***
25651212-GTTA-ATT 23505065-GTTA-ATT P1_b3 ***
9147317-C-CCACACA 9309708-C-CCACACA ***
4697475-T-TA 4829434-T-TA 14×A***
27371247-G-A 25225100-G-A P1_g3 ***
58865729-C-A 56725142-G-T ***
27462497-A-C 25316350-A-C P1_Y2 ***
14565670-G-A 12453870-G-A ***
27462520-A-C 25316373-A-C P1_Y2 ***
27482660-A-G 25336513-A-G P1_Y2 ***
27743630-C-T 25597483-C-T P1_Y2 ***
28802821-T-C 26656674-T-C ***
28819338-T-A 26673191-T-A ***
58832655-T-A 56758216-A-T ***
58833038-G-A 56757833-C-T ***
58838205-C-T 56752666-G-A ***
58839309-A-G 56751562-T-C ***
58867665-T-C 56723206-A-G ***
3838601-CT-C 3970560-CT-C 31×T***
58880098-C-T 56710773-G-A ***
58903521-C-G 56687350-G-C ***
58908634-C-T 56682237-G-A ***
58913043-G-C 56677828-C-G ***
58913307-T-C 56677564-A-G ***
58913310-C-T 56677561-G-A ***
58913333-A-G 56677538-T-C ***
59013631-T-A 56867484-T-A ***
13199183-C-AAA 11043507-C-AAA ***
10015084-TGGT-CGGG 10177475-TGGT-CGGG ***
28545694-T-TAAA 26399547-T-TAAA ***
15248010-C-A 13136096-C-A ***
13700704-G-A 11545028-G-A ***
14341494-G-T 12220789-G-T ***
22234984-T-A 20073098-T-A DYZ19 ***
58821155-C-T 56769716-G-A ***
22481757-G-T 20319871-G-T DYZ19 ***
58831492-C-A 56759379-G-T ***
20769005-G-A 18607119-G-A P4_Prx ***
22313156-C-G 20151270-C-G DYZ19 ***
22455439-G-C 20293553-G-C DYZ19 ***
22475471-C-T 20313585-C-T DYZ19 ***
24273231-A-C 22127084-A-C P3_b1 ***
24899930-C-A 22753783-C-A g1 ***
22332659-A-G 20170773-A-G DYZ19 ***
58875224-C-A 56715647-G-T ***
13110038-C-A 10599524-C-A ***
58914500-C-T 56676371-G-A ***
21148589-C-CAAAAA 18986703-C-CAAAAA 30×A***
22319286-T-TGA 20157400-T-TGA DYZ19 ***
58828784-C-A 56762087-G-T ***
13444976-GACTAC-AAATAT 11289300-GACTAC-AAATAT ***
16818883-G-GTA 14707003-G-GTA ***
22495764-CTTGC-GTTG 20333878-CTTGC-GTTG DYZ19 ***
22481210-G-C 20319324-G-C DYZ19 ***
58879555-A-G 56711316-T-C ***
22241295-C-A 20079409-C-A DYZ19 ***
22456650-T-A 20294764-T-A DYZ19 ***
10015025-A-G 10177416-A-G ***
13529004-T-G 11373328-T-G ***
27462490-C-A 25316343-C-A P1_Y2 ***
22365691-C-A 20203805-C-A DYZ19 ***
22499499-C-T 20337613-C-T DYZ19 ***
58875220-T-G 56715651-A-C ***
26228689-C-CTTTT 24082542-C-CTTTT P1_Y1 27×T***
58843750-A-T 56747121-T-A ***
22287028-C-T 20125142-C-T BY16404 DYZ19 ***
22502032-T-C 20340146-T-C DYZ19 ***
58870396-A-T 56720475-T-A ***
22241322-G-A 20079436-G-A DYZ19 ***
19656650-C-T 17544770-C-T P5_Prx ***
22360249-G-A 20198363-G-A DYZ19 ***
10019063-GGGTA-TGGTG 10181454-GGGTA-TGGTG ***
13110931-C-T 10600417-C-T ***
22251462-C-A 20089576-C-A DYZ19 ***
22456727-C-T 20294841-C-T DYZ19 ***
9932701-GT-AC 10095092-GT-AC ***
22273911-TTCT-CTCA 20112025-TTCT-CTCA DYZ19 ***
9954500-G-C 10116891-G-C ***
58868288-A-C 56722583-T-G ***
22367457-T-C 20205571-T-C FGC35522 DYZ19 ***
58820472-C-T 56770399-G-A ***
58909239-T-C 56681632-A-G ***
4998922-C-CA 5130881-C-CA 12×A***
13465562-A-T 11309886-A-T ***
13537569-A-T 11381893-A-T ***
13923535-A-T 11802829-A-T ***
13372033-C-T 11216357-C-T ***
13109769-G-A 10599255-G-A ***
13109791-C-A 10599277-C-A ***
13109805-C-T 10599291-C-T ***
13109814-G-A 10599300-G-A ***
13110149-C-A 10599635-C-A ***
13112778-A-G 10602264-A-G ***
13206784-C-A 11051108-C-A 14×A***
13263785-A-G 11108109-A-G ***
13288088-G-A 11132412-G-A ***
13353190-C-T 11197514-C-T ***
13411304-G-C 11255628-G-C ***
10034792-T-C 10197183-T-C ***
13464450-G-A 11308774-G-A ***
13475919-A-C 11320243-A-C ***
13484397-T-G 11328721-T-G ***
13485201-A-G 11329525-A-G ***
13497540-A-C 11341864-A-C ***
13606877-C-A 11451201-C-A 25×A***
13700699-G-A 11545023-G-A ***
22252638-C-T 20090752-C-T DYZ19 ***
13700707-A-T 11545031-A-T ***
13700711-A-T 11545035-A-T ***
13730247-A-G 11574571-A-G ***
10040023-A-G 10202414-A-G ***
9930713-C-G 10093104-C-G ***
13537581-C-T 11381905-C-T ***
13603629-A-T 11447953-A-T 15×T***
24836734-G-A 22690587-G-A P3_b2 15×GGAA***
58867683-T-A 56723188-A-T ***
22252626-A-T 20090740-A-T DYZ19 ***
22251476-A-G 20089590-A-G DYZ19 ***
14491320-GT-CA ***
22252577-GGTC-AGTG 20090691-GGTC-AGTG DYZ19 ***
22252598-TAC-AAA 20090712-TAC-AAA DYZ19 ***
22252612-TCC-CAA 20090726-TCC-CAA DYZ19 ***
22236527-AT-A 20074641-AT-A DYZ19 ***
58831537-CTTTCC-GATTCA 56759329-GGAAAG-TGAATC ***
10039508-A-T 10201899-A-T ***
13603644-T-G 11447968-T-G ***
9779792-C-A 9942183-C-A ***
24836743-G-A 22690596-G-A P3_b2 ***
24836750-A-G 22690603-A-G P3_b2 ***
22344706-A-T 20182820-A-T DYZ19 ***
22274113-A-C 20112227-A-C DYZ19 ***
13470393-G-A 11314717-G-A ***
3315341-G-A 3447300-G-A ***
3394337-C-T 3526296-C-T 21×T***
3459459-G-A 3591418-G-A ***
3548688-G-T 3680647-G-T ***
3548689-A-G 3680648-A-G ***
6127385-T-A 6259344-T-A ***
13453738-TATGAA-T,TATTTC 11298062-TATGAA-T,TATTTC ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

ERROR: There was an error querying the server about the notes for this person.

Big Tree Main Page