Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > L513/S215/DF1 > S5668 > Z16340 > BY624 > BY617 > BY616

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
345270
FGC
C9EEQ
21969003-T-C 19807117-T-C FGC34306 Y+
15999837-G-A 13887957-G-A FGC34296 YY+
4100302-A-G 4232261-A-G FGC34283 +
3777166-C-G 3909125-C-G FGC34282 +
5989886-G-A 6121845-G-A FGC34289 +
10065392-C-T 10227783-C-T FGC34292 +
5016017-G-A 5147976-G-A FGC34286 +
15975622-A-G 13863742-A-G FGC32314 YY+
15759110-C-A 13647230-C-A FGC34295 Y+
17126792-C-T 15014912-C-T FGC34298 Y+
17700463-G-A 15588583-G-A FGC34301 Y+
17964470-C-T 15852590-C-T FGC34302 Y+
13238057-A-G 11082381-A-G FGC34293 +
18989142-C-T 16877262-C-T FGC34304 Y+
25525225-C-T 23379078-C-T FGC34315 P1_gr1 *
14247458-C-A 12126752-C-A FGC34294 YY*
4701951-C-A 4833910-C-A FGC34284 *
5085770-T-C 5217729-T-C FGC34287 *
5387786-C-G 5519745-C-G FGC34288 *
4975522-A-G 5107481-A-G FGC34285 *
3332369-AAATG-A 3464328-AAATG-A *
3397999-C-CT 3529958-C-CT **
26628168-C-T 24482021-C-T P1_g2 **
22491002-T-G 20329116-T-G DYZ19 *****
13397657-G-T 11241981-G-T **
13430781-G-A 11275105-G-A **
58995123-A-G 56848976-A-G **
28585456-C-A 26439309-C-A **
4591439-C-G 4723398-C-G FGC36285 **
58995130-T-C 56848983-T-C **
13108685-C-A 10598171-C-A **
13108692-A-G 10598178-A-G **
13108687-A-G 10598173-A-G **
6225989-C-T 6357948-C-T IR3_Dst 13×TTCT**
3296818-C-T 3428777-C-T FGC36284 **
14156491-C-T 12035785-C-T FGC36286 **
16129484-C-A 14017604-C-A P8_Prx ***
18440782-A-T 16328902-A-T P6_Dst ***
13125510-T-A 10614996-T-A ***
18373295-A-T 16261415-A-T P6_Prx ***
13253096-T-G 11097420-T-G ***
16739370-C-A 14627490-C-A ***
13108729-A-T 10598215-A-T ***
13342575-T-C 11186899-T-C ***
13349874-G-C 11194198-G-C ***
13372077-T-C 11216401-T-C ***
15070442-A-G 12958533-A-G ***
15070441-C-T 12958532-C-T ***
13415901-G-T 11260225-G-T ***
13464473-G-A 11308797-G-A ***
13108755-T-A 10598241-T-A ***
13108536-C-A 10598022-C-A ***
13108612-T-A 10598098-T-A ***
3974307-G-T 4106266-G-T ***
10009528-GCAGA-CCAGC 10171919-GCAGA-CCAGC ***
22267245-T-G 20105359-T-G DYZ19 ***
22449022-A-T 20287136-A-T DYZ19 ***
6895048-CG-C 7027007-CG-C ***
10084640-C-A 10247031-C-A ***
10084650-G-T 10247041-G-T ***
26563874-C-T 24417727-C-T P1_g2 ***
5885123-T-TA 6017082-T-TA 17×A***
22361386-TT-C 20199500-TT-C DYZ19 ***
22343616-T-A 20181730-T-A DYZ19 ***
2924147-G-C 3056106-G-C FGC36283 ***
3316138-G-A 3448097-G-A ***
3550408-G-A 3682367-G-A ***
3974329-A-T 4106288-A-T ***
13108605-A-T 10598091-A-T ***
5786629-G-A 5918588-G-A ***
6162064-T-A 6294023-T-A IR3_Dst ***
6226026-T-A 6357985-T-A IR3_Dst ***
9939272-A-G 10101663-A-G ***
9980912-A-G 10143303-A-G ***
13108535-T-C 10598021-T-C ***
20385786-C-T 18223900-C-T P5_Dst ***
13108541-G-C 10598027-G-C ***
13108546-T-C 10598032-T-C ***
13108551-A-G 10598037-A-G ***
13108552-A-C 10598038-A-C ***
13108557-A-G 10598043-A-G ***
13108587-T-A 10598073-T-A ***
20385670-C-A 18223784-C-A P5_Dst ***
13848921-T-C 11728215-T-C ***
20385790-G-A 18223904-G-A P5_Dst ***
5492439-C-CTTTTTTTTTTTTT 5624398-C-CTTTTTTTTTTTTT 18×T***
10034732-ACCACCA-CCCCCCC 10197123-ACCACCA-CCCCCCC ***
10010543-GCTGTCTCC-ACTGGCTGT 10172934-GCTGTCTCC-ACTGGCTGT ***
8599677-A-ATTTTTT 8731636-A-ATTTTTT 17×T***
7258755-C-CAAAAA 7390714-C-CAAAAA 25×A***
6226028-CT-C 6357987-CT-C IR3_Dst ***
5540823-CT-C 5672782-CT-C 8×T***
4446661-AA-G 4578620-AA-G ***
13108546-TTCTAAA-CTCTGC 10598032-TTCTAAA-CTCTGC ***
4076728-GTATA-G 4208687-GTATA-G 10×TA***
2747780-T-TAA 2879739-T-TAA ***
3079580-G-AA 3211539-G-AA ***
59002947-G-T 56856800-G-T ***
58909240-C-A 56681631-G-T ***
58892544-C-T 56698327-G-A ***
13108532-TATTC-AATCA 10598018-TATTC-AATCA ***
13306462-GGGC-AGGT 11150786-GGGC-AGGT ***
58877097-T-C 56713774-A-G ***
22309955-TTA-AGG 20148069-TTA-AGG DYZ19 ***
58910093-CAGTCCATTCCATTCG-C 56680751-TTGGAATGGACTCGAA-T ***
58893205-CAGTCTT-AAGTGTA 56697660-AAGACTG-TACACTT ***
58831577-CATTT-GAGTC 56759290-AAATG-GACTC ***
26971341-T-TA 24825194-T-TA P1_r4 10×A***
22504824-GAT-ATC 20342938-GAT-ATC DYZ19 ***
22421955-CTG-TTT 20260069-CTG-TTT DYZ19 ***
22293077-TTTG-GTTT 20131191-TTTG-GTTT DYZ19 ***
15252823-CTAAAT-ACAAAA 13140909-CTAAAT-ACAAAA ***
20712300-A-ACG 18550414-A-ACG P4_Prx ***
20568565-G-AA 18406679-G-AA P5_Dst ***
19305556-G-GA 17193676-G-GA ***
17919881-C-AA 15808001-C-AA ***
17543961-TTA-ATT 15432081-TTA-ATT ***
16021879-A-AT 13909999-A-AT ***
15832213-CTTC-TTTCT 13720333-CTTC-TTTCT ***
58890720-C-T 56700151-G-A ***
58857152-C-A 56733719-G-T ***
20385796-C-T 18223910-C-T P5_Dst ***
22248348-G-A 20086462-G-A DYZ19 ***
22327493-T-A 20165607-T-A DYZ19 ***
22322609-A-G 20160723-A-G DYZ19 ***
22292741-C-A 20130855-C-A DYZ19 ***
22292735-T-A 20130849-T-A DYZ19 ***
22289734-C-A 20127848-C-A DYZ19 ***
22283353-T-G 20121467-T-G DYZ19 ***
22248341-T-A 20086455-T-A DYZ19 ***
22366529-C-A 20204643-C-A DYZ19 ***
22235090-C-T 20073204-C-T DYZ19 ***
22235089-A-C 20073203-A-C DYZ19 ***
22232096-C-T 20070210-C-T DYZ19 ***
22232086-A-G 20070200-A-G DYZ19 ***
13418295-T-C 11262619-T-C ***
21203573-C-T 19041687-C-T ***
20598412-T-G 18436526-T-G P5_Dst ***
22360507-T-A 20198621-T-A DYZ19 ***
22420622-G-T 20258736-G-T DYZ19 ***
58837526-C-G 56753345-G-C ***
27009645-C-T 24863498-C-T P1_r4 ***
58824708-C-T 56766163-G-A ***
28007936-C-A 25861789-C-A P1_Y2 ***
27276098-C-A 25129951-C-A P1_g3 ***
27276096-C-T 25129949-C-T P1_g3 ***
27095966-C-A 24949819-C-A P1_r4 ***
27095962-T-G 24949815-T-G P1_r4 ***
27009639-A-T 24863492-A-T P1_r4 ***
22421560-C-G 20259674-C-G DYZ19 ***
26927984-C-A 24781837-C-A P1_r3 ***
26535363-G-A 24389216-G-A P1_g2 ***
25995108-T-C 23848961-T-C P1_Y1 ***
25851291-G-A 23705144-G-A P1_Y1 ***
22450003-T-G 20288117-T-G DYZ19 ***
22449974-A-C 20288088-A-C DYZ19 ***
22429376-C-T 20267490-C-T DYZ19 ***
22495768-C-A 20333882-C-A DYZ19 ***
27087610-G-GCCTT 24941463-G-GCCTT P1_r4 15×CCTT***
22236475-CTG-TTA 20074589-CTG-TTA DYZ19 ***
22343623-C-A 20181737-C-A DYZ19 ***
58915503-T-G 56675368-A-C ***
58915495-C-T 56675376-G-A ***
58873060-A-C 56717811-T-G ***
13358667-C-A 11202991-C-A ***
22343603-T-G 20181717-T-G DYZ19 ***
22343455-G-C 20181569-G-C DYZ19 ***
58910283-G-A 56680588-C-T ***
58915568-T-C 56675303-A-G ***
58910260-T-G 56680611-A-C ***
22343516-G-A 20181630-G-A DYZ19 ***
22343416-C-A 20181530-C-A DYZ19 ***
10104557-N-T 10266948-N-T ***
24918049-C-CA 22771902-C-CA g1 9×A***
22437696-T-G 20275810-T-G DYZ19 ***
58915515-G-C 56675356-C-G ***
58915553-TTCCTT-CTCTAG 56675313-AAGGAA-CTAGAG ***
6489371-C-CAA 6621330-C-CAA 25×A***
22344837-T-C 20182951-T-C DYZ19 ***
22252895-CCTTA-TCTTC 20091009-CCTTA-TCTTC DYZ19 ***
22234437-AC-A 20072551-AC-A DYZ19 ***
22273771-CGA-GGT 20111885-CGA-GGT DYZ19 ***
13432094-A-C 11276418-A-C ***
22273771-C-G 20111885-C-G DYZ19 ***
13432248-C-G 11276572-C-G ***
22234441-TTAAA-GTATG 20072555-TTAAA-GTATG DYZ19 ***
22273781-G-C 20111895-G-C DYZ19 ***
58847152-G-A 56743719-C-T ***
22332895-C-T 20171009-C-T DYZ19 ***
22332855-T-A 20170969-T-A DYZ19 ***
22332854-C-A 20170968-C-A DYZ19 ***
22257020-G-A 20095134-G-A DYZ19 ***
6162229-A-T 6294188-A-T IR3_Dst ***
13407243-T-A 11251567-T-A ***
22266548-G-T 20104662-G-T DYZ19 ******
58865679-C-A 56725192-G-T ***
22273746-AGA-TGT 20111860-AGA-TGT DYZ19 ***
9700780-C-CAAA 9863171-C-CAAA FGC5285 IR3_Prx 23×A***
13108658-A-T 10598144-A-T ***
22344742-A-C 20182856-A-C DYZ19 ***
58870580-G-T 56720291-C-A ***
22421928-T-C 20260042-T-C DYZ19 ***
22352888-A-T 20191002-A-T DYZ19 ***
22344810-G-T 20182924-G-T DYZ19 ***
2729648-C-CTTTT 2861607-C-CTTTT 25×T***
22354954-C-G 20193068-C-G DYZ19 ***
22236511-C-A 20074625-C-A DYZ19 ***
22231993-A-T 20070107-A-T DYZ19 ***
22268233-G-T 20106347-G-T DYZ19 ***
22344854-A-C 20182968-A-C DYZ19 ***
22344851-C-G 20182965-C-G DYZ19 ***
22311623-G-T 20149737-G-T DYZ19 ***
22450021-G-A 20288135-G-A DYZ19 ***
26060208-GACT-AAAA 23914061-GACT-AAAA P1_Y1 ***
13484731-A-C 11329055-A-C ***
22481757-G-T 20319871-G-T DYZ19 ***
22364978-C-G 20203092-C-G DYZ19 ***
22293035-T-C 20131149-T-C DYZ19 ***
10018258-A-G 10180649-A-G ***
17946915-GTTTG-TTTTT 15835035-GTTTG-TTTTT ***
3302904-T-TTTTA 3434863-T-TTTTA 11×TTTA***
58844956-G-C 56745915-C-G ***
4819268-T-C 4951227-T-C ***
58863512-T-G 56727359-A-C ***
13484727-A-G 11329051-A-G ***
22352889-C-A 20191003-C-A DYZ19 ***
13740743-A-G 11585067-A-G ***
9930372-C-T 10092763-C-T ***
58831496-CCGTTCGAT-TGATTCCAC 56759367-ATCGAACGG-GTGGAATCA ***
13723574-TTCA-CTGC 11567898-TTCA-CTGC ***
27462494-C-A 25316347-C-A P1_Y2 ***
22344708-T-G 20182822-T-G DYZ19 ***
22273721-GGTCT-TGTCC 20111835-GGTCT-TGTCC DYZ19 ***
22449939-TTTCG-GTTCA 20288053-TTTCG-GTTCA DYZ19 ***
22449982-C-G 20288096-C-G DYZ19 ***
58913189-A-T 56677682-T-A ***
22360601-G-T 20198715-G-T DYZ19 ***
13416678-C-T 11261002-C-T ***
22337792-CAGT-TAGG 20175906-CAGT-TAGG DYZ19 ***
22292261-T-G 20130375-T-G DYZ19 ***
15557033-C-A 13445153-C-A 18×A***
13453318-GCATTCCATTC-G 11297642-GCATTCCATTC-G 12×CATTC***
22309728-C-T 20147842-C-T DYZ19 ***
13470573-A-T 11314897-A-T F18175 ***
24387624-C-A 22241477-C-A ***
13358764-A-G 11203088-A-G ***
10028085-T-C 10190476-T-C ***
13652101-TCGAACAGAAC-T 11496425-TCGAACAGAAC-T ***
22421529-TCTT-ACTA 20259643-TCTT-ACTA DYZ19 ***
22337829-A-C 20175943-A-C DYZ19 ***
58823126-C-A 56767745-G-T ***
13398337-C-T 11242661-C-T ***
22421573-G-T 20259687-G-T DYZ19 ***
13108532-T-A 10598018-T-A ***
13716371-A-T 11560695-A-T ***
7451285-C-T 7583244-C-T IR1_L ***
13108685-CCA-ACG 10598171-CCA-ACG ***
22456703-C-A 20294817-C-A DYZ19 ***
22456672-T-A 20294786-T-A DYZ19 ***
6604084-C-CT 6736043-C-CT 17×T***
18537223-T-G 16425343-T-G P6_Dst ***
10034745-TCCCACCG-CCCCCCCC 10197136-TCCCACCG-CCCCCCCC ***
13109946-G-A 10599432-G-A ***
58909214-G-T 56681657-C-A ***
22343893-T-C 20182007-T-C DYZ19 ***
22337828-A-G 20175942-A-G DYZ19 ***
19744991-ATTTT-A 17633111-ATTTT-A P5_Prx 23×T***
22235092-A-G 20073206-A-G DYZ19 ***
13108716-ACTATG-TGTACA 10598202-ACTATG-TGTACA ***
13465441-ACCCA-TCCCC 11309765-ACCCA-TCCCC ***
22344834-AGTT-TGTC 20182948-AGTT-TGTC DYZ19 ***
58891312-T-A 56699559-A-T ***
58915545-T-C 56675326-A-G ***
22292259-G-T 20130373-G-T DYZ19 ***
58823346-CCATT-C 56767516-CAATG-C ***
22241295-C-A 20079409-C-A DYZ19 ***
3205858-C-CAAAAA 3337817-C-CAAAAA 15×A***
58915512-A-AAAG 56675358-A-ACTT ***
13108698-C-CA 10598184-C-CA ***
58915538-T-G 56675333-A-C ***
9932903-A-G 10095294-A-G ***
28058679-C-T 25912532-C-T P1_Y2 ***
3253829-C-CA 3385788-C-CA 18×A***
22420751-T-C 20258865-T-C DYZ19 ***
22236518-GATGG-TAAGA 20074632-GATGG-TAAGA DYZ19 ***
22234457-T-C 20072571-T-C DYZ19 ***
22234430-A-G 20072544-A-G DYZ19 ***
22234419-A-C 20072533-A-C DYZ19 ***
5308799-TAG-T 5440758-TAG-T 19×AG***
10010520-T-G 10172911-T-G S12909 ***
22332893-A-T 20171007-A-T DYZ19 ***
58870123-T-C 56720748-A-G ***
15070434-GAGGCTCCA-AAGACACTG 12958525-GAGGCTCCA-AAGACACTG ***
22421869-A-G 20259983-A-G DYZ19 ***
13142409-CCA-C 10631895-CCA-C ***
13489029-TGCGC-CGCGT 11333353-TGCGC-CGCGT ***
14429405-TTA-T 12308680-T-. 15×TA***
25845054-T-A 23698907-T-A P1_b3 ***
28058687-G-T 25912540-G-T P1_Y2 ***
10010531-A-G 10172922-A-G S12910 ***
10018233-A-G 10180624-A-G ***
27791971-T-G 25645824-T-G P1_Y2 ***
26499920-T-TTG 24353773-T-TTG P1_Y1 15×TG***
22344834-A-T 20182948-A-T DYZ19 ***
13399577-C-T 11243901-C-T ***
13306419-A-T 11150743-A-T ***
13277992-G-A 11122316-G-A ***
58915526-GAATC-CATTG 56675341-GATTC-CAATG ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

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