Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > Z195/S355 > Z272 > S450 > Z295/S1217 > S25783 > CTS4065 > 15548847GACAC-G > FGC15710 > CTS10029 > FGC15730 > FGC15731 > FGC15726 > FGC15733

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFGC
16547345-C-A 14435465-C-A FGC15736 YY++
3684190-G-A 3816149-G-A FGC15718 +
21529494-A-G 19367608-A-G FGC15744 YY++
21298986-C-A 19137100-C-A FGC15743 YY++
23104678-C-A 20942792-C-A FGC15746 Y+
23130136-C-A 20968250-C-A FGC15747 YY++
4832009-T-G 4963968-T-G FGC15721 +
4726349-G-A 4858308-G-A FGC15720 +
15939043-A-T 13827163-A-T FGC15734 YY++
13676073-G-T 11520397-G-T FGC15729 +
5207335-C-T 5339294-C-T FGC15723 +
3377315-G-C 3509274-G-C FGC15717 +
2952791-G-A 3084750-G-A FGC15715 +
7681235-GT-G 7813194-GT-G ++
17804987-T-C 15693107-T-C FGC15741 YY++
17657782-C-T 15545902-C-T FGC15740 YY++
17505018-G-A 15393138-G-A FGC15739 Y+
17357757-G-C 15245877-G-C FGC15738 YY++
22946163-G-A 20784277-G-A FGC15745 YY++
3851380-A-G 3983339-A-G FGC15719 +
8704232-G-T 8836191-G-T FGC15727 YY+
6990455-T-A 7122414-T-A FGC15724 YY++
9070056-C-T 9232447-C-T FGC15728 Y+
8049306-G-T 8181265-G-T FGC15725 YY++
5036054-A-G 5168013-A-G FGC15722 *
3225930-C-T 3357889-C-T FGC15716 *
22459741-G-T 20297855-G-T DYZ19 ****
58831111-TACACTCCA-T 56759751-ATGGAGTGT-A **
15013031-G-A 12901119-G-A Y40778 **
19479688-A-AGTGT 17367808-A-AGTGT 20×GT**
25566325-T-C 23420178-T-C P1_gr1 **
21551885-ATATG-A 19389999-ATATG-A 4×TATG**
17733553-TAATAAATA-T 15621673-TAATAAATA-T 11×AATA**
15013032-C-A 12901120-C-A Y40779 **
22205320-T-TA 20043434-T-TA 9×A**
27626723-T-A 25480576-T-A P1_Y2 ***
27626724-G-A 25480577-G-A P1_Y2 ***
27917273-A-T 25771126-A-T P1_Y2 ***
28489420-C-T 26343273-C-T ***
58825356-G-T 56765515-C-A ***
27626757-C-T 25480610-C-T P1_Y2 ***
58826839-C-T 56764032-G-A ***
58830838-C-T 56760033-G-A ***
58832594-T-A 56758277-A-T ***
27398425-A-G 25252278-A-G P1_g3 ***
27626729-T-A 25480582-T-A P1_Y2 ***
27873324-C-T 25727177-C-T P1_Y2 20×T***
27626758-G-T 25480611-G-T P1_Y2 ***
27626760-G-A 25480613-G-A P1_Y2 ***
27626770-G-T 25480623-G-T P1_Y2 ***
27626771-G-T 25480624-G-T P1_Y2 ***
27917247-A-T 25771100-A-T P1_Y2 ***
28112819-G-A 25966672-G-A P1_Y2 ***
28112811-G-T 25966664-G-T P1_Y2 ***
27917281-G-T 25771134-G-T P1_Y2 ***
27917280-G-T 25771133-G-T P1_Y2 ***
27917275-A-T 25771128-A-T P1_Y2 ***
27917274-A-T 25771127-A-T P1_Y2 ***
27917272-C-T 25771125-C-T P1_Y2 ***
20013372-T-TA 17901492-T-TA P5_Prx 8×A***
26563131-A-T 24416984-A-T P1_g2 ***
27195434-T-G 25049287-T-G P1_g3 ***
22421028-T-A 20259142-T-A DYZ19 ***
22500180-A-T 20338294-A-T DYZ19 ***
22499933-A-C 20338047-A-C DYZ19 ***
22499545-C-A 20337659-C-A DYZ19 ***
22496017-G-A 20334131-G-A DYZ19 ***
22426328-A-C 20264442-A-C DYZ19 ***
22426317-T-A 20264431-T-A DYZ19 ***
22421067-C-G 20259181-C-G DYZ19 ***
22366432-G-T 20204546-G-T DYZ19 ***
22504826-T-A 20342940-T-A DYZ19 ***
22364462-G-C 20202576-G-C DYZ19 ***
22361084-C-T 20199198-C-T DYZ19 ***
22359779-A-T 20197893-A-T DYZ19 ***
22355111-G-T 20193225-G-T DYZ19 ***
22352878-T-A 20190992-T-A DYZ19 ***
22352875-A-G 20190989-A-G DYZ19 ***
22351196-T-A 20189310-T-A DYZ19 ***
22344117-G-T 20182231-G-T DYZ19 ***
22500514-A-T 20338628-A-T DYZ19 ***
24152855-A-T 22006708-A-T P3_b1 ******
26563148-A-T 24417001-A-T P1_g2 ***
25866083-C-T 23719936-C-T P1_Y1 ***
26563145-A-T 24416998-A-T P1_g2 ***
58833789-T-A 56757082-A-T ***
26563121-A-T 24416974-A-T P1_g2 ***
26484989-C-T 24338842-C-T P1_Y1 ***
26469843-G-T 24323696-G-T P1_Y1 ***
26324913-C-A 24178766-C-A P1_Y1 ***
26276384-G-T 24130237-G-T P1_Y1 ***
26262207-G-T 24116060-G-T P1_Y1 ***
25855068-C-T 23708921-C-T P1_Y1 ***
24323497-G-T 22177350-G-T P3_t1 ***
25854882-A-G 23708735-A-G P1_Y1 ***
25854864-C-A 23708717-C-A P1_Y1 ***
25674268-T-G 23528121-T-G P1_b3 ***
25674253-A-T 23528106-A-T P1_b3 ***
25674249-C-G 23528102-C-G P1_b3 ***
25674240-C-A 23528093-C-A P1_b3 ***
24608194-T-G 22462047-T-G P3_t2 ***
24608186-G-A 22462039-G-A P3_t2 ***
58832603-C-T 56758268-G-A ***
58854233-T-C 56736638-A-G ***
58838388-C-G 56752483-G-C ***
22234332-CT-AG 20072446-CT-AG DYZ19 ***
22367119-AT-GA 20205233-AT-GA DYZ19 ***
22361071-CTAAAC-AGAGT 20199185-CTAAAC-AGAGT DYZ19 ***
22351196-TT-AG 20189310-TT-AG DYZ19 ***
22332674-ACTT-TCGG 20170788-ACTT-TCGG DYZ19 ***
22292751-AG-GA 20130865-AG-GA DYZ19 ***
22276466-ATAA-TTAC 20114580-ATAA-TTAC DYZ19 ***
22023684-G-GTTTTTTT 19861798-G-GTTTTTTT 17×T***
22496008-CG-GA 20334122-CG-GA DYZ19 ***
21853677-C-CAAAAAAAA 19691791-C-CAAAAAAAA 43×A***
21306590-C-CAAAAAAAA 19144704-C-CAAAAAAAA 27×A***
20574157-TC-CT 18412271-TC-CT P5_Dst ***
20574131-CCA-GTGG 18412245-CCA-GTGG P5_Dst ***
18593579-A-ATGTG 16481699-A-ATGTG 14×TG***
18255888-T-TAAAAA 16144008-T-TAAAAA 22×A***
16785733-AAAA-CAAC 14673853-AAAA-CAAC ***
22369675-G-GA 20207789-G-GA DYZ19 ***
22496026-CT-AC 20334140-CT-AC DYZ19 ***
15882074-C-CACAAAAA 13770194-C-CACAAAAA 25×A***
22422369-C-T 20260483-C-T DYZ19 ***
22286816-A-T 20124930-A-T DYZ19 ***
59007959-C-CAAAAAA 56861812-C-CAAAAAA 26×A***
58907251-ATCA-TTCC 56683617-TGAT-GGAA ***
58863512-TCT-GCC 56727357-AGA-GGC ***
22498796-TT-GA 20336910-TT-GA DYZ19 ***
58840405-CA-TAG 56750465-TG-CTA ***
27902194-AGTC-TGTT 25756047-AGTC-TGTT P1_Y2 ***
25676090-AG-A 23529943-AG-A P1_b3 ***
24686428-C-CTTT 22540281-C-CTTT P3_b2 23×T***
24508205-C-CTTTTTT 22362058-C-CTTTTTT 22×T***
24115209-CAA-AAT 21969062-CAA-AAT P3_b1 ***
16344416-C-CTTCTTA 14232536-C-CTTCTTA ***
15013031-GC-AA 12901119-GC-AA ***
58843679-T-A 56747192-A-T ***
58876424-C-A 56714447-G-T ***
19377288-AAGGG-A 17265408-AAGGG-A 5×AGGG***
18818389-G-GA 16706509-G-GA 17×A***
58913221-T-G 56677650-A-C ***
58913108-C-A 56677763-G-T ***
58909165-G-C 56681706-C-G ***
58884736-T-A 56706135-A-T ***
58884715-C-T 56706156-G-A ***
22343136-T-C 20181250-T-C DYZ19 ***
28457748-CA-C 26311601-CA-C 21×A***
58848412-T-G 56742459-A-C ***
58848404-C-T 56742467-G-A ***
58847052-T-A 56743819-A-T ***
58847042-G-A 56743829-C-T ***
58844248-T-C 56746623-A-G ***
58844246-A-C 56746625-T-G ***
58844245-G-T 56746626-C-A ***
58843741-T-G 56747130-A-C ***
20842560-AAG-GAA 18680674-AAG-GAA P4_Dst ***
22311598-TA-GT 20149712-TA-GT DYZ19 ***
14746176-C-CAA 12634245-C-CAA 19×A***
13110938-AAAGTT-GGAGAG 10600424-AAAGTT-GGAGAG ***
14738413-CTTTTT-C 12626481-CTTTTT-C 17×T***
13484502-GGGT-CAGC 11328826-GGGT-CAGC ***
13484477-AGCA-GGCC 11328801-AGCA-GGCC ***
13414797-A-ATCTTTTT 11259121-A-ATCTTTTT 20×T***
13267597-C-CAAAAAAA 11111921-C-CAAAAAAA 11×A***
13110958-AA-TG 10600444-AA-TG ***
3957616-T-TA 4089575-T-TA 12×A***
8901046-TACAC-T 9033005-TACAC-T 15×AC***
8575956-A-ATTTTTTT 8707915-A-ATTTTTTT 28×T***
8016938-C-CTTTTTTT 8148897-C-CTTTTTTT 25×T***
6201138-GC-G 6333097-GC-G IR3_Dst ***
5937238-CTCTC-A 6069197-CTCTC-A ***
5574077-CTTT-C 5706036-CTTT-C 19×T***
5147441-CAAAAAAAAAA-C 5279400-CAAAAAAAAAA-C 30×A***
22343137-T-G 20181251-T-G DYZ19 ***
22311593-C-G 20149707-C-G DYZ19 ***
22342624-A-T 20180738-A-T DYZ19 ***
27398510-C-CAAAAAAAAA 25252363-C-CAAAAAAAAA P1_g3 23×A***
9303941-G-T 9466332-G-T ***
22273685-C-A 20111799-C-A DYZ19 ***
22273690-A-G 20111804-A-G DYZ19 ***
22364862-A-G 20202976-A-G DYZ19 ***
22480697-A-T 20318811-A-T DYZ19 ***
58913273-T-C 56677598-A-G ***
58840403-A-T 56750468-T-A ***
58876441-C-A 56714430-G-T ***
58847081-G-A 56743790-C-T ***
58832604-A-T 56758267-T-A ***
58832602-C-T 56758269-G-A ***
58874465-AG-TAT 56716405-CT-ATA ***
58854277-C-T 56736594-G-A ***
22341680-C-T 20179794-C-T DYZ19 ***
22341648-G-T 20179762-G-T DYZ19 ***
19517642-C-A 17405762-C-A FGC72927 ***
58847060-A-C 56743811-T-G ***
58859162-G-C 56731709-C-G ***
13470244-GT-G 11314568-GT-G ***
22341847-T-G 20179961-T-G DYZ19 ***
9191109-A-T 9353500-A-T ***
6671335-T-A 6803294-T-A ***
6209784-A-T 6341743-A-T IR3_Dst ***
6201134-G-T 6333093-G-T IR3_Dst ***
5009286-T-C 5141245-T-C ***
3634504-A-T 3766463-A-T ***
22332673-C-A 20170787-C-A DYZ19 ***
13464176-C-A 11308500-C-A ***
58859164-A-T 56731707-T-A ***
22353387-A-C 20191501-A-C DYZ19 ***
22365762-T-G 20203876-T-G DYZ19 ***
24207919-C-G 22061772-C-G P3_b1 ***
17081250-T-A 14969370-T-A ***
58847090-A-G 56743781-T-C ***
22365765-ACA-CCT 20203879-ACA-CCT DYZ19 ***
58909144-C-G 56681727-G-C ***
22341694-TCAC-GCAG 20179808-TCAC-GCAG DYZ19 ***
9342739-G-T 9505130-G-T ***
6089764-G-GTTTTT 6221723-G-GTTTTT 31×T***
19656586-G-T 17544706-G-T P5_Prx ***
13114407-G-A 10603893-G-A ***
13475702-C-T 11320026-C-T ***
22341618-G-T 20179732-G-T DYZ19 ***
23801733-C-CAAAAAAA 21639847-C-CAAAAAAA 31×A***
22421783-GC-CT 20259897-GC-CT DYZ19 ***
15336019-C-CAAAAAAA 13224137-C-CAAAAAAA 30×A***
58843621-T-A 56747250-A-T ***
20531664-T-G 18369778-T-G P5_Dst ***
58843619-C-G 56747252-G-C ***
27902197-C-T 25756050-C-T P1_Y2 34×T***
22496212-A-G 20334326-A-G DYZ19 ***
16784423-G-A 14672543-G-A ***
58843625-G-A 56747246-C-T ***
22496198-T-G 20334312-T-G DYZ19 ***
27918646-GT-G 25772499-GT-G P1_Y2 11×T***
58826833-C-T 56764038-G-A 9×CCATT***
20531661-G-A 18369775-G-A P5_Dst ***
20531675-T-C 18369789-T-C P5_Dst ***
22344726-G-T 20182840-G-T DYZ19 ***
22309319-CT-GA 20147433-CT-GA DYZ19 ***
58913247-CG-C 56677622-TC-T ***
22491770-C-T 20329884-C-T DYZ19 ***
58913266-A-T 56677605-T-A ***
22341863-A-C 20179977-A-C DYZ19 ***
22273689-T-A 20111803-T-A DYZ19 ***
27617980-C-CAAAAAAA 25471833-C-CAAAAAAA P1_Y2 29×A***
22309281-GCTCCA-TCTGCG 20147395-GCTCCA-TCTGCG DYZ19 ***
20531677-C-A 18369791-C-A P5_Dst ***
27417788-A-C 25271641-A-C P1_g3 ***
13111839-G-A 10601325-G-A ***
58820555-G-C 56770316-C-G ***
58866449-A-G 56724422-T-C ***
19937284-G-GCCCC 17825404-G-GCCCC P5_Prx 13×C***
20531707-G-A 18369821-G-A P5_Dst ***
20531695-C-T 18369809-C-T P5_Dst ***
20531681-A-C 18369795-A-C P5_Dst ***
9342737-C-G 9505128-C-G ***
9342986-G-T 9505377-G-T ***
22341815-T-C 20179929-T-C DYZ19 ***
20233162-T-A 18071276-T-A P5_Dst ***
20955090-A-T 18793204-A-T P4_Dst ***
20842571-A-G 18680685-A-G P4_Dst ***
20435194-G-A 18273308-G-A P5_Dst ***
20264270-A-T 18102384-A-T P5_Dst ***
20264246-C-T 18102360-C-T P5_Dst ***
20264245-C-T 18102359-C-T P5_Dst ***
20264244-A-T 18102358-A-T P5_Dst ***
20233158-T-A 18071272-T-A P5_Dst ***
22234710-C-T 20072824-C-T DYZ19 ***
20233155-A-T 18071269-A-T P5_Dst ***
20233154-A-T 18071268-A-T P5_Dst ***
20132282-C-A 18020402-C-A P5_Dst ***
19858704-C-A 17746824-C-A P5_Prx ***
19858700-A-T 17746820-A-T P5_Prx ***
19858669-A-T 17746789-A-T P5_Prx ***
19858668-C-T 17746788-C-T P5_Prx ***
22234708-C-G 20072822-C-G DYZ19 ***
22234713-T-G 20072827-T-G DYZ19 ***
19816804-C-T 17704924-C-T P5_Prx ***
22321096-T-A 20159210-T-A DYZ19 ***
22341659-G-C 20179773-G-C DYZ19 ***
22341643-G-C 20179757-G-C DYZ19 ***
22332677-T-G 20170791-T-G DYZ19 ***
22332676-T-G 20170790-T-G DYZ19 ***
22332674-A-T 20170788-A-T DYZ19 ***
22330060-G-A 20168174-G-A DYZ19 ***
22329671-G-A 20167785-G-A DYZ19 ***
22317729-A-G 20155843-A-G DYZ19 ***
22248764-G-T 20086878-G-T DYZ19 ***
22315215-C-T 20153329-C-T DYZ19 ***
58912416-A-T 56678455-T-A ***
22311552-C-T 20149666-C-T DYZ19 ***
22289506-G-A 20127620-G-A DYZ19 ***
22251587-C-A 20089701-C-A DYZ19 ***
22251516-T-A 20089630-T-A DYZ19 ***
22250250-C-A 20088364-C-A DYZ19 ***
22248840-C-T 20086954-C-T DYZ19 ***
19833480-G-A 17721600-G-A P5_Prx ***
19816800-A-T 17704920-A-T P5_Prx ***
9345055-C-G 9507446-C-G ***
10094985-T-C 10257376-T-C ***
13114355-G-T 10603841-G-T ***
13110965-T-A 10600451-T-A ***
13109526-C-A 10599012-C-A ***
13109515-T-C 10599001-T-C ***
13109505-T-A 10598991-T-A ***
10095035-G-T 10257426-G-T ***
10095023-A-T 10257414-A-T ***
10094970-G-A 10257361-G-A ***
13114401-G-C 10603887-G-C ***
10094969-G-C 10257360-G-C ***
10084304-G-A 10246695-G-A ***
10084031-T-A 10246422-T-A ***
9585399-G-A 9747790-G-A IR3_Prx ***
9585388-A-T 9747779-A-T IR3_Prx ***
9363322-C-A 9525713-C-A ***
9345502-A-T 9507893-A-T ***
9345497-G-C 9507888-G-C ***
13114393-C-G 10603879-C-G ***
13463452-G-T 11307776-G-T ***
19775683-C-A 17663803-C-A P5_Prx ***
13726494-G-A 11570818-G-A ***
19386620-A-T 17274740-A-T ***
19176144-G-T 17064264-G-T ***
18443675-T-A 16331795-T-A P6_Dst ***
17835066-A-G 15723186-A-G ***
17323693-A-G 15211813-A-G ***
15675458-C-T 13563578-C-T ***
13726549-C-G 11570873-C-G ***
13726487-C-A 11570811-C-A ***
13467385-T-A 11311709-T-A ***
13726438-A-T 11570762-A-T ***
13724587-G-C 11568911-G-C ***
13724578-C-A 11568902-C-A ***
13724573-G-T 11568897-G-T ***
13724572-G-T 11568896-G-T ***
13724570-A-G 11568894-A-G ***
13724565-T-A 11568889-T-A ***
13475568-G-T 11319892-G-T ***
25206080-A-C 23059933-A-C g1 ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

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