Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > DF49/S474 > Z2980 > Z2976 > DF23 > Z2961 > M222 > DF106 > DF104 > DF105 > FGC23742

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFGC
SUV4X
9420519-T-C 9582910-T-C FGC31523 YY+
23995013-A-G 21848866-A-G FGC31528 +
24000312-G-A 21854165-G-A FGC31529 Y+
14111614-G-A 11990908-G-A FGC31524 Y+
15618654-C-T 13506774-C-T FGC31525 YY+
15942956-G-A 13831076-G-A FGC31526 YY+
5350631-A-G 5482590-A-G FGC31520 +
16846575-T-C 14734695-T-C FGC31527 YY+
6635711-T-G 6767670-T-G FGC31521 YY+
16001145-CT-C 13889265-CT-C +
7155787-A-G 7287746-A-G FGC31522 Y*
4236291-T-A 4368250-T-A FGC31519 *
28245422-CTTT-C 26099275-CTTT-C P1_b4 15×T**
19126436-C-CAAAAAA 17014556-C-CAAAAAA 25×A**
13139020-T-TCAATCC 10628506-T-TCAATCC **
6153711-T-G 6285670-T-G IR3_Dst **
27461936-T-TTG 25315789-T-TTG P1_Y2 27×TG**
13258629-G-A 11102953-G-A **
19309422-CATATATATATATATATATAT-C 17197542-CATATATATATATATATATAT-C 19×AT**
13567082-C-T 11411406-C-T **
22236571-T-A 20074685-T-A DYZ19 **
16401967-G-GTA 14290087-G-GTA **
18709995-G-GT 16598115-G-GT **
13565341-T-G 11409665-T-G **
18174668-G-GTA 16062788-G-GTA **
5919330-C-CT 6051289-C-CT 10×T**
26228689-C-CTTTTTTTTTT 24082542-C-CTTTTTTTTTT P1_Y1 27×T**
9200884-G-A 9363275-G-A **
9459384-T-TTGTG 9621775-T-TTGTG 18×TG**
27461323-A-G 25315176-A-G P1_Y2 **
13257264-C-T 11101588-C-T **
27127501-GCTTC-G 24981354-GCTTC-G P1_g3 10×CTTC**
13257201-T-C 11101525-T-C **
13257193-C-G 11101517-C-G **
13601424-C-T 11445748-C-T **
2888870-C-CAAAAAAA 3020829-C-CAAAAAAA 32×A**
13567070-G-C 11411394-G-C **
13143720-TATTCC-T 10633206-TATTCC-T 11×ATTCC***
58868763-G-A 56722108-C-T ***
58866931-T-A 56723940-A-T ***
58861560-G-C 56729311-C-G ***
58859740-C-A 56731131-G-T ***
58866939-C-T 56723932-G-A ***
58877007-T-C 56713864-A-G ***
58872295-T-C 56718576-A-G ***
58889742-T-G 56701129-A-C ***
58910413-T-G 56680458-A-C ***
58909992-T-C 56680879-A-G ***
58909962-G-C 56680909-C-G ***
58909253-G-T 56681618-C-A ***
58908622-T-C 56682249-A-G ***
58907234-A-C 56683637-T-G ***
58897988-C-G 56692883-G-C ***
58893196-T-A 56697675-A-T ***
58889810-C-A 56701061-G-T ***
58884141-T-C 56706730-A-G ***
58872348-T-G 56718523-A-C ***
58882833-G-C 56708038-C-G ***
58882809-G-A 56708062-C-T ***
58882773-C-G 56708098-G-C ***
58881441-G-T 56709430-C-A ***
58881407-T-C 56709464-A-G ***
58877130-G-C 56713741-C-G ***
58877012-T-C 56713859-A-G ***
58853629-G-A 56737242-C-T ***
58875765-G-T 56715106-C-A ***
58874429-G-C 56716442-C-G ***
58859677-C-T 56731194-G-A ***
58846285-G-C 56744586-C-G ***
58849337-T-C 56741534-A-G ***
26378559-A-G 24232412-A-G P1_Y1 ***
27816423-C-T 25670276-C-T P1_Y2 ***
27816419-A-C 25670272-A-C P1_Y2 ***
27575689-T-C 25429542-T-C P1_Y2 ***
27409247-G-A 25263100-G-A P1_g3 ***
27337028-C-A 25190881-C-A P1_g3 ***
27306771-T-C 25160624-T-C P1_g3 ***
27245043-C-T 25098896-C-T P1_g3 ***
26495890-T-A 24349743-T-A P1_Y1 ***
26349672-T-G 24203525-T-G P1_Y1 ***
27921877-A-T 25775730-A-T P1_Y2 ***
26311661-C-T 24165514-C-T P1_Y1 ***
26207974-C-T 24061827-C-T P1_Y1 ***
25877649-A-G 23731502-A-G P1_Y1 ***
25877025-A-G 23730878-A-G P1_Y1 ***
25323010-A-C 23176863-A-C P2_r1 ***
24731902-T-G 22585755-T-G P3_b2 ***
24611464-G-A 22465317-G-A P3_t2 ***
24562497-A-G 22416350-A-G P3_t2 ***
22499699-T-G 20337813-T-G DYZ19 ***
27816424-C-A 25670277-C-A P1_Y2 ***
28058679-C-T 25912532-C-T P1_Y2 ***
58849323-T-A 56741548-A-T ***
58828984-G-T 56761887-C-A ***
58849290-A-C 56741581-T-G ***
58849288-G-C 56741583-C-G ***
58847888-A-T 56742983-T-A ***
58847179-C-G 56743692-G-C ***
58847070-G-C 56743801-C-G ***
58915523-T-G 56675348-A-C ***
58842254-G-C 56748617-C-G ***
58840397-G-A 56750474-C-T ***
58829772-G-T 56761099-C-A ***
58828784-C-A 56762087-G-T ***
28060159-A-C 25914012-A-C P1_Y2 ***
58828105-A-T 56762766-T-A ***
58823054-T-C 56767817-A-G ***
58823041-C-G 56767830-G-C ***
58819503-T-C 56771368-A-G ***
28060183-C-T 25914036-C-T P1_Y2 ***
28060181-G-A 25914034-G-A P1_Y2 ***
28060180-T-C 25914033-T-C P1_Y2 ***
28060174-C-T 25914027-C-T P1_Y2 ***
28060160-G-C 25914013-G-C P1_Y2 ***
58910429-C-A 56680442-G-T ***
21940393-C-CA 19778507-C-CA 17×A***
58915526-G-C 56675345-C-G ***
22273612-ATTAACAG-CTTCAGAT 20111726-ATTAACAG-CTTCAGAT DYZ19 ***
26208003-AC-GG 24061856-AC-GG P1_Y1 ***
25567109-TG-CA 23420962-TG-CA P1_gr1 ***
22495764-CTTGC-GTTG 20333878-CTTGC-GTTG DYZ19 ***
22481716-ATTG-TTTC 20319830-ATTG-TTTC DYZ19 ***
22446152-AC-A 20284266-AC-A DYZ19 ***
22421679-CCAGTCC-GCAGACG 20259793-CCAGTCC-GCAGACG DYZ19 ***
22361381-AGTTTTT-CGTTTG 20199495-AGTTTTT-CGTTTG DYZ19 ***
22352870-ACA-CCT 20190984-ACA-CCT DYZ19 ***
22309406-ACTGT-GCTGC 20147520-ACTGT-GCTGC DYZ19 ***
22256848-G-GTGCT 20094962-G-GTGCT DYZ19 ***
27409231-GCCTAA-CCCTGG 25263084-GCCTAA-CCCTGG P1_g3 ***
21553403-C-CTTTTTTTT 19391517-C-CTTTTTTTT 31×T***
20655024-GTG-A 18493138-GTG-A P4_Prx ***
19943369-TACCT-CACCA 17831489-TACCT-CACCA P5_Prx ***
19943357-CAT-GAC 17831477-CAT-GAC P5_Prx ***
19716474-AGTAAG-GCAAC 17604594-AGTAAG-GCAAC P5_Prx ***
19716455-CA-TT 17604575-CA-TT P5_Prx ***
18353526-TATGGTGTGAGCTTGT-AAAAAG 16241646-TATGGTGTGAGCTTGT-AAAAAG P6_Prx ***
18353513-GCTGGGGGAGC-G 16241633-GCTGGGGGAGC-G P6_Prx ***
17054896-TAC-T 14943016-TAC-T ***
26349672-TAA-GAAG 24203525-TAA-GAAG P1_Y1 ***
27816413-GAA-G 25670266-GAA-G P1_Y2 ***
14471469-CTTTTTTT-C 12350738-CTTTTTTT-C 19×T***
58843985-AATTCCATTCCATTCGATTTAGTTCGATTCTATTCACTTCCATTTCCATTCGATTCC-A 56746821-CAATGGAATGGAATCGAATGGAAATGGAAGTGAATAGAATCGAACTAAATCGAATGG-C ***
58917636-CCCTTCCATTCCAATGAATTCNNN-C ***
58916668-CG-AT 56674202-CG-AT ***
58915512-A-AAAG 56675358-A-ACTT ***
58907501-ATTCCGTTCGATTCCC-A 56683335-TGGAAGGGAATCGAAC-T ***
58906340-ATTTT-GTTCA 56684527-AAAAT-TGAAC ***
58885636-GCATTC-G 56705205-AAATGG-A 5×CATTC***
58882411-TACATTCGATTTCTTG-T 56708444-ACAAGAAATCGAATGT-A ***
58859194-ATG-TTC 56731675-CAT-GAA ***
58847195-GTTTCG-CATTCC 56743671-CGAAAC-GGAATG ***
58842266-ATCCC-TTCCA 56748601-GGGAT-TGGAA ***
27816419-ATTTCC-CTTTTA 25670272-ATTTCC-CTTTTA P1_Y2 ***
58842238-GCAG-CCAC 56748630-CTGC-GTGG ***
58830817-CCCATGACATTC-TCTATGCGATTT 56760043-GAATGTCATGGG-AAATCGCATAGA ***
58819361-NGA-N ***
58819357-NNNNNG-N ***
58819356-NNNNNNG-N ***
58819346-N-NAT ***
28491345-A-ACACCCCCAAAAAAAG 26345198-A-ACACCCCCAAAAAAAG ***
28491339-A-AAAAAAACACCCCAAT 26345192-A-AAAAAAACACCCCAAT ***
28491337-A-AAAAAAACACCCCC 26345190-A-AAAAAAACACCCCC ***
28491336-A-ACCCCCCC 26345189-A-ACCCCCCC ***
16818883-G-GTA 14707003-G-GTA ***
14413210-C-CAACAAAA 12292507-C-CAACAAAA 23×A***
58915528-A-T 56675343-T-A ***
13924970-C-CA 11804264-C-CA 20×A***
5905918-G-AA 6037877-G-AA ***
5088451-C-CTTT 5220410-C-CTTT 27×T***
4965185-T-TAAAAAA 5097144-T-TAAAAAA 20×A***
4076256-CAAAAAAAAAA-C 4208215-CAAAAAAAAAA-C 21×A***
3522968-TAA-T 3654927-TAA-T 24×A***
3350530-TTAAG-AAAAA 3482489-TTAAG-AAAAA ***
2805529-CAAAAAAAA-C 2937488-CAAAAAAAA-C 22×A***
2752725-CAAAAA-C 2884684-CAAAAA-C 18×A***
26477922-AAC-A 24331775-AAC-A P1_Y1 14×AC***
13485344-A-AT 11329668-A-AT ***
9541874-CTG-C 9704265-CTG-C IR3_Prx ***
22723404-G-AA 20561518-G-AA 12×A***
13944051-CA-C 11823345-CA-C 22×A***
22491885-T-A 20329999-T-A DYZ19 ***
22267245-TT-AG 20105359-TT-AG DYZ19 ***
16772452-TC-T 14660572-TC-T ***
23495775-A-AAT 21333889-A-AAT 9×AT***
58915545-T-C 56675326-A-G ***
58915538-T-G 56675333-A-C ***
58915530-C-G 56675341-G-C ***
8776547-C-CCTCAGTTTTTTTTT 8908506-C-CCTCAGTTTTTTTTT 24×T***
9570189-CTT-C 9732580-CTT-C IR3_Prx ***
13811067-AGGAAT-A 11690361-AGGAAT-A 11×GGAAT***
13448633-GCATTCCATTCC-G 11292957-GCATTCCATTCC-G 13×CATTC***
13701139-CAAA-GAAT 11545463-CAAA-GAAT ***
13608647-CAAA-C 11452971-CAAA-C 27×A***
13607598-CA-C 11451922-CA-C 18×A***
13545355-AG-GA 11389679-AG-GA ***
13532875-CAAAA-C 11377199-CAAAA-C 13×A***
13484485-GAAGAG-CAAGTT 11328809-GAAGAG-CAAGTT ***
13482823-TG-CA 11327147-TG-CA ***
13470345-CACCACA-AACCCCTG 11314669-CACCACA-AACCCCTG ***
13463630-TAGCAAGC-ATGAAAGG 11307954-TAGCAAGC-ATGAAAGG ***
13444976-GACTAC-AAATAT 11289300-GACTAC-AAATAT ***
9570196-GTTC-ATTT 9732587-GTTC-ATTT IR3_Prx ***
13413781-GTAC-AT 11258105-GTAC-AT ***
13356629-GA-G 11200953-GA-G 11×A***
13267779-C-CCCCCCT 11112103-C-CCCCCCT ***
13258696-TCAGA-CCAGG 11103020-TCAGA-CCAGG ***
13140121-ACTCGCAC-A 10629607-ACTCGCAC-A ***
13110012-TT-CC 10599498-TT-CC ***
9961025-AT-GC 10123416-AT-GC ***
9682840-CATGT-AATGA 9845231-CATGT-AATGA IR3_Prx ***
9682821-TT-CA 9845212-TT-CA IR3_Prx ***
9654084-GAA-G 9816475-GAA-G IR3_Prx 14×A***
22495727-T-A 20333841-T-A DYZ19 ***
22309099-G-T 20147213-G-T DYZ19 ***
22421838-G-A 20259952-G-A DYZ19 ***
22335607-T-G 20173721-T-G DYZ19 ***
58909152-A-G 56681719-T-C ***
22421839-GTT-TTG 20259953-GTT-TTG DYZ19 ***
58851915-T-C 56738956-A-G ***
13105515-A-T 10595001-A-T ***
22354884-A-G 20192998-A-G DYZ19 ***
22292344-G-T 20130458-G-T DYZ19 ***
13253705-T-C 11098029-T-C ***
22367910-T-A 20206024-T-A DYZ19 ***
22235029-A-T 20073143-A-T DYZ19 ***
13513955-A-G 11358279-A-G ***
58876306-A-T 56714565-T-A ***
10034767-C-T 10197158-C-T ***
22344142-C-G 20182256-C-G DYZ19 ***
23317649-C-CTTTTTTT 21155763-C-CTTTTTTT 37×T***
58872240-C-T 56718631-G-A ***
58840427-G-A 56750444-C-T ***
58840425-T-C 56750446-A-G ***
22366503-C-G 20204617-C-G DYZ19 ***
22366499-A-T 20204613-A-T DYZ19 ***
58914261-G-T 56676610-C-A ***
19709167-G-T 17597287-G-T P5_Prx ***
5066184-C-CT 5198143-C-CT 22×T***
22234756-A-C 20072870-A-C DYZ19 ***
13448853-ACAG-CCAT 11293177-ACAG-CCAT ***
58872331-A-C 56718540-T-G ***
22329991-T-G 20168105-T-G DYZ19 ***
13207274-CT-C 11051598-CT-C 16×T***
13470315-G-A 11314639-G-A ***
13140115-CATTAA-C 10629601-CATTAA-C ***
10052666-CTC-ATT 10215057-CTC-ATT ***
13535657-A-G 11379981-A-G ***
13253190-C-T 11097514-C-T ***
22223274-A-T 20061388-A-T DYZ19 ***
22342918-G-T 20181032-G-T DYZ19 ***
4200055-CA-C 4332014-CA-C 23×A***
22481895-G-A 20320009-G-A DYZ19 ***
13579546-AAAAAAAAACAGAAACT-A 11423870-AAAAAAAAACAGAAACT-A ***
13485175-G-C 11329499-G-C ***
13486257-C-G 11330581-C-G ***
2729648-C-CTTTTT 2861607-C-CTTTTT 25×T***
13256206-G-A 11100530-G-A FGC29766 ***
13481812-A-G 11326136-A-G ***
13445362-CAAAAAAA-C 11289686-CAAAAAAA-C 15×A***
24836792-GA-G 22690645-GA-G P3_b2 ***
24836798-G-A 22690651-G-A P3_b2 ***
22358762-T-C 20196876-T-C DYZ19 ***
13479489-C-G 11323813-C-G ***
3214906-G-T 3346865-G-T ***
23801733-C-CAAAAAAA 21639847-C-CAAAAAAA 31×A***
22457231-CT-C 20295345-CT-C DYZ19 ***
22366755-AGAGA-GGAGT 20204869-AGAGA-GGAGT DYZ19 ***
22341725-CTTT-TCTG 20179839-CTTT-TCTG DYZ19 ***
22113187-C-CAAAAAA 19951301-C-CAAAAAA 23×A***
20574944-G-T 18413058-G-T P5_Dst 19×T***
13701474-A-G 11545798-A-G 5×AATGG***
58819967-C-A 56770904-G-T ***
22309410-T-C 20147524-T-C DYZ19 ***
22232334-G-A 20070448-G-A DYZ19 ***
22358487-G-A 20196601-G-A DYZ19 ***
22421531-T-C 20259645-T-C DYZ19 ***
58908904-G-C 56681967-C-G ***
58847176-C-G 56743695-G-C ***
22504570-C-A 20342684-C-A DYZ19 ***
22502948-G-T 20341062-G-T DYZ19 ***
13470322-G-C 11314646-G-C ***
13470314-A-C 11314638-A-C ***
19937580-G-A 17825700-G-A P5_Prx ***
22226585-G-C 20064699-G-C DYZ19 ***
22366513-T-C 20204627-T-C DYZ19 ***
13470854-TT-CC 11315178-TT-CC ***
22257036-A-G 20095150-A-G DYZ19 ***
22241419-C-A 20079533-C-A DYZ19 ***
22344742-A-C 20182856-A-C DYZ19 ***
13475632-G-A 11319956-G-A ***
22258181-G-A 20096295-G-A DYZ19 ***
22268478-A-ACC 20106592-A-ACC DYZ19 ***
4517054-G-GA 4649013-G-GA 15×A***
22335693-T-G 20173807-T-G DYZ19 ***
13411435-T-G 11255759-T-G ***
22227755-T-A 20065869-T-A DYZ19 ***
22251567-T-C 20089681-T-C DYZ19 ***
13419135-A-G 11263459-A-G ***
22365977-GGTGGCAGCA-TGTTACATAG 20204091-GGTGGCAGCA-TGTTACATAG DYZ19 ***
10016613-TG-CA 10179004-TG-CA ***
7270276-C-CTTTT 7402235-C-CTTTT 25×T***
27499513-T-A 25353366-T-A P1_Y2 ***
27499459-A-G 25353312-A-G P1_Y2 ***
22335714-A-C 20173828-A-C DYZ19 ***
22257118-C-G 20095232-C-G DYZ19 ***
22251571-G-C 20089685-G-C DYZ19 ***
13108777-A-G 10598263-A-G ***
58874431-G-T 56716440-C-A ***
22421708-T-C 20259822-T-C DYZ19 ***
13720045-G-A 11564369-G-A ***
16074806-A-T 13962926-A-T ***
13747577-C-G 11591901-C-G ***
13747575-C-A 11591899-C-A ***
13747568-T-G 11591892-T-G ***
13735105-A-T 11579429-A-T ***
13733903-A-T 11578227-A-T ***
13728425-G-A 11572749-G-A ***
13720063-A-G 11564387-A-G ***
13702975-A-G 11547299-A-G ***
18353560-G-A 16241680-G-A P6_Prx ***
13702971-C-G 11547295-C-G ***
13702960-C-G 11547284-C-G ***
13567097-G-A 11411421-G-A ***
13567075-T-G 11411399-T-G ***
13473597-G-A 11317921-G-A ***
13470362-C-T 11314686-C-T ***
13463646-T-C 11307970-T-C ***
13328810-C-T 11173134-C-T ***
13263792-G-C 11108116-G-C ***
16074807-C-T 13962927-C-T ***
19488177-G-A 17376297-G-A ***
13126350-G-A 10615836-G-A ***
22310097-G-A 20148211-G-A DYZ19 ***
22367093-A-C 20205207-A-C DYZ19 ***
22364857-C-A 20202971-C-A DYZ19 ***
22364782-C-A 20202896-C-A DYZ19 ***
22361061-G-A 20199175-G-A DYZ19 ***
22342917-A-C 20181031-A-C DYZ19 ***
22342868-G-A 20180982-G-A DYZ19 ***
22337096-G-C 20175210-G-C DYZ19 ***
22329951-T-G 20168065-T-G DYZ19 ***
22326193-A-G 20164307-A-G DYZ19 ***
13470303-A-G 11314627-A-G ***
19716455-C-T 17604575-C-T P5_Prx ***
22309083-G-C 20147197-G-C DYZ19 ***
22248147-C-G 20086261-C-G DYZ19 ***
22232455-G-A 20070569-G-A DYZ19 ***
22232454-C-A 20070568-C-A DYZ19 ***
22226691-C-A 20064805-C-A DYZ19 ***
20711199-A-C 18549313-A-C P4_Prx ***
20409169-C-G 18247283-C-G P5_Dst ***
19948129-C-G 17836249-C-G P5_Prx ***
19716456-A-T 17604576-A-T P5_Prx ***
13253855-C-T 11098179-C-T ***
13126325-C-G 10615811-C-G ***
10019059-AAGGGGGTA-GAGGTGGTG 10181450-AAGGGGGTA-GAGGTGGTG ***
13129599-C-A 10619085-C-A ***
22289475-AC-GG 20127589-AC-GG DYZ19 ***
22226693-T-C 20064807-T-C DYZ19 ***
13126339-G-C 10615825-G-C ***
58874441-A-T 56716430-T-A ***
22268259-T-A 20106373-T-A DYZ19 ***
58870586-TAATTCGAG-T 56720276-GCTCGAATT-G ***
22332559-T-A 20170673-T-A DYZ19 ***
22257020-G-A 20095134-G-A DYZ19 ***
13482611-G-C 11326935-G-C ***
13485289-G-C 11329613-G-C ***
22703626-GAAAGAAAG-AAAAAAAAA 20541740-GAAAGAAAG-AAAAAAAAA ***
13485262-T-G 11329586-T-G ***
28806347-C-G 26660200-C-G ***
13720065-G-A 11564389-G-A ***
13720057-T-G 11564381-T-G ***
13720055-G-A 11564379-G-A ***
24235387-G-GTTTTT 22089240-G-GTTTTT P3_b1 29×T***
13481513-GC-TG 11325837-GC-TG ***
58819359-NNNGA-N ***
22263779-GGTGT-AGTGG 20101893-GGTGT-AGTGG DYZ19 ***
13486249-A-C 11330573-A-C ***
22227756-T-G 20065870-T-G DYZ19 ***
13126268-A-T 10615754-A-T ***
5106939-T-G 5238898-T-G ***
13115312-G-T 10604798-G-T ***
13110033-T-G 10599519-T-G ***
9682834-G-A 9845225-G-A IR3_Prx ***
9570199-C-T 9732590-C-T IR3_Prx ***
9340432-A-C 9502823-A-C ***
6483166-C-T 6615125-C-T ***
6339097-G-C 6471056-G-C IR3_Dst ***
5843839-C-T 5975798-C-T ***
5106951-A-C 5238910-A-C ***
4820800-C-T 4952759-C-T ***
58877025-T-C 56713846-A-G ***
13481955-A-T 11326279-A-T ***
58903377-G-C 56687494-C-G ***
24562496-T-A 22416349-T-A P3_t2 ***
22268246-G-T 20106360-G-T DYZ19 ***
13485263-T-G 11329587-T-G ***
13253235-C-T 11097559-C-T ***
6503051-A-G 6635010-A-G ***
28336668-C-CAAAAAAA 26190521-C-CAAAAAAA P1_b4 31×A***
6191304-CA-C 6323263-CA-C IR3_Dst 15×A***
59027472-T-TA 56881325-T-TA 11×A***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

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